Wall clock time and date at job start Tue Mar 31 2020 23:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47178 * 2 1 4 4 C 1.34723 * 116.99900 * 180.02562 * 3 2 1 5 5 O 1.21488 * 120.00251 * 359.97438 * 4 3 2 6 6 C 1.47609 * 120.00253 * 180.02562 * 4 3 2 7 7 C 1.40102 * 121.18450 * 5.39848 * 6 4 3 8 8 C 1.38597 * 117.88304 * 179.97438 * 7 6 4 9 9 Cl 1.73601 * 119.92123 * 180.02562 * 8 7 6 10 10 N 1.31969 * 120.16416 * 0.02562 * 8 7 6 11 11 N 1.28270 * 122.65596 * 359.97438 * 10 8 7 12 12 C 1.32648 * 122.20897 * 359.72006 * 11 10 8 13 13 N 1.38329 * 120.26896 * 180.28033 * 12 11 10 14 14 C 1.46842 * 111.00531 * 37.18499 * 13 12 11 15 15 C 1.53031 * 109.52923 * 174.16329 * 14 13 12 16 16 C 1.53124 * 109.27857 * 59.17880 * 15 14 13 17 17 C 1.53117 * 109.15890 * 302.34778 * 16 15 14 18 18 H 1.08991 * 109.50815 * 297.71183 * 17 16 15 19 19 C 1.50707 * 109.50381 * 177.62920 * 17 16 15 20 20 H 1.07994 * 120.00345 * 240.00519 * 19 17 16 21 21 C 1.37878 * 119.99299 * 60.00391 * 19 17 16 22 22 N 1.31517 * 120.00482 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99774 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47243 * 59.99528 * 23 21 19 25 25 H 1.48494 * 109.47209 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47018 * 299.99852 * 23 21 19 27 27 C 1.46856 * 110.99823 * 272.97496 * 13 12 11 28 28 H 1.09004 * 109.47566 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47237 * 300.00603 * 1 2 3 30 30 H 1.09003 * 109.46917 * 59.99926 * 1 2 3 31 31 H 1.09003 * 109.46917 * 120.00073 * 2 1 3 32 32 H 1.08997 * 109.46601 * 240.00073 * 2 1 3 33 33 H 1.07996 * 121.05806 * 0.02562 * 7 6 4 34 34 H 1.09003 * 109.45948 * 294.18423 * 14 13 12 35 35 H 1.09003 * 109.45891 * 54.14428 * 14 13 12 36 36 H 1.08993 * 109.50742 * 179.12043 * 15 14 13 37 37 H 1.08999 * 109.50392 * 299.24325 * 15 14 13 38 38 H 1.09001 * 109.51999 * 62.24949 * 16 15 14 39 39 H 1.08994 * 109.52518 * 182.44626 * 16 15 14 40 40 H 0.96996 * 119.99986 * 179.97438 * 22 21 19 41 41 H 1.08999 * 109.46178 * 305.86177 * 27 13 12 42 42 H 1.09007 * 109.45678 * 65.82338 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3496 1.5454 -0.0005 5 8 4.0897 0.5820 -0.0005 6 6 3.9139 2.9094 0.0000 7 6 3.0887 4.0358 0.1138 8 6 3.6911 5.2840 0.1073 9 17 2.7188 6.7155 0.2460 10 7 5.0020 5.3870 -0.0040 11 7 5.7702 4.3651 -0.1090 12 6 5.3006 3.1246 -0.1078 13 7 6.1663 2.0512 -0.2177 14 6 7.4141 2.3045 0.5138 15 6 8.2839 1.0456 0.4928 16 6 8.5894 0.6664 -0.9590 17 6 7.2725 0.4553 -1.7110 18 1 6.7245 -0.3720 -1.2603 19 6 7.5631 0.1387 -3.1555 20 1 7.1838 0.7814 -3.9361 21 6 8.3132 -0.9716 -3.4803 22 7 8.7755 -1.7541 -2.5297 23 14 8.6741 -1.3638 -5.2707 24 1 9.4193 -0.2353 -5.8842 25 1 9.4936 -2.5995 -5.3512 26 1 7.3967 -1.5681 -5.9999 27 6 6.4320 1.7314 -1.6261 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 2.0173 3.9347 0.2046 34 1 7.9523 3.1257 0.0405 35 1 7.1829 2.5689 1.5457 36 1 9.2167 1.2388 1.0224 37 1 7.7519 0.2274 0.9782 38 1 9.1554 1.4681 -1.4334 39 1 9.1724 -0.2543 -0.9801 40 1 9.3029 -2.5354 -2.7583 41 1 5.4874 1.5797 -2.1485 42 1 6.9748 2.5554 -2.0894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:56 Heat of formation + Delta-G solvation = -18.405941 kcal Electronic energy + Delta-G solvation = -27819.154975 eV Core-core repulsion = 23826.323118 eV Total energy + Delta-G solvation = -3992.831857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.62374 -40.05078 -38.48872 -37.06771 -36.52627 -34.30201 -33.75711 -32.27669 -31.74051 -30.28488 -29.87945 -26.29534 -25.08161 -24.97220 -23.39384 -22.35118 -21.64961 -21.37258 -19.01517 -18.51549 -17.72684 -17.32849 -16.77582 -16.63711 -15.91171 -15.58141 -15.56824 -14.68218 -14.38647 -14.14361 -14.11023 -13.63566 -13.45901 -12.97786 -12.92248 -12.66111 -12.55086 -12.21124 -12.07516 -11.88312 -11.84650 -11.76443 -11.58504 -10.95763 -10.83477 -10.77295 -10.67804 -10.59936 -10.52094 -10.23919 -10.18819 -9.93781 -9.74103 -9.46174 -9.19538 -8.78775 -8.34218 -8.08236 -5.99972 -4.06653 -0.02716 0.45878 1.33110 2.35215 2.41549 3.21880 3.31224 3.35989 3.38146 3.51778 3.89392 4.20061 4.36739 4.42735 4.58874 4.80070 4.82909 4.87883 5.09625 5.16186 5.30247 5.45294 5.55555 5.59837 5.61099 5.74505 5.76893 5.95710 6.10731 6.20613 6.32746 6.38031 6.59741 6.65226 6.81300 7.01509 7.25553 7.34264 7.54132 7.72589 7.74883 8.04203 8.12495 8.29512 8.40703 8.95903 9.57443 11.06020 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.003823 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.900061 B = 7322.624961 C = 8668.515935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.362 6.362 4 C 0.500 3.500 5 O -0.428 6.428 6 C -0.098 4.098 7 C -0.041 4.041 8 C 0.080 3.920 9 Cl -0.006 7.006 10 N -0.191 5.191 11 N -0.253 5.253 12 C 0.314 3.686 13 N -0.463 5.463 14 C 0.063 3.937 15 C -0.116 4.116 16 C -0.113 4.113 17 C 0.060 3.940 18 H 0.043 0.957 19 C -0.517 4.517 20 H 0.053 0.947 21 C 0.066 3.934 22 N -0.886 5.886 23 Si 0.891 3.109 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.278 1.278 27 C 0.082 3.918 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.173 0.827 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.095 0.905 40 H 0.261 0.739 41 H 0.059 0.941 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.521 9.107 8.069 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.281 6.281 4 C 0.339 3.661 5 O -0.309 6.309 6 C -0.112 4.112 7 C -0.070 4.070 8 C -0.092 4.092 9 Cl 0.022 6.978 10 N -0.038 5.038 11 N -0.101 5.101 12 C 0.078 3.922 13 N -0.184 5.184 14 C -0.064 4.064 15 C -0.154 4.154 16 C -0.151 4.151 17 C 0.041 3.959 18 H 0.061 0.939 19 C -0.556 4.556 20 H 0.071 0.929 21 C -0.136 4.136 22 N -0.524 5.524 23 Si 0.719 3.281 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.203 1.203 27 C -0.041 4.041 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.190 0.810 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.145 9.218 8.215 18.776 hybrid contribution -0.798 -0.417 -1.144 1.456 sum -14.944 8.801 7.071 18.729 Atomic orbital electron populations 1.21809 0.92607 1.03063 1.03352 1.23072 0.95090 0.79490 1.03309 1.86466 1.23479 1.33072 1.85043 1.20257 0.81067 0.88731 0.76035 1.91066 1.59469 1.40409 1.39986 1.20151 0.93121 0.92341 1.05628 1.22545 1.02846 0.89490 0.92157 1.23230 0.92283 0.89216 1.04459 1.98417 1.66600 1.36825 1.96007 1.72580 1.01911 1.24218 1.05073 1.73777 1.27858 0.95623 1.12876 1.21896 0.91299 0.90594 0.88372 1.59793 1.14725 1.27502 1.16422 1.22166 0.88524 0.99109 0.96565 1.21696 0.97212 0.95930 1.00586 1.21703 1.00622 1.02002 0.90769 1.18677 0.91128 0.90426 0.95689 0.93869 1.21022 1.33318 1.09785 0.91468 0.92905 1.24894 0.95626 0.95939 0.97104 1.69874 1.35767 1.15150 1.31619 0.86674 0.78316 0.77685 0.85405 1.20297 1.21243 1.20338 1.22492 1.00177 1.00765 0.80669 0.90104 0.91593 0.91477 0.90904 0.90612 0.80962 0.92971 0.92110 0.92681 0.91756 0.94722 0.88659 0.92909 0.92206 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.67 6.19 37.16 0.23 0.90 16 3 O -0.36 -4.46 9.63 -40.55 -0.39 -4.85 16 4 C 0.50 7.67 7.90 34.55 0.27 7.95 16 5 O -0.43 -8.10 14.73 -19.26 -0.28 -8.38 16 6 C -0.10 -1.44 5.93 -104.43 -0.62 -2.06 16 7 C -0.04 -0.47 9.57 -38.75 -0.37 -0.84 16 8 C 0.08 1.00 7.35 -17.36 -0.13 0.87 16 9 Cl -0.01 -0.06 29.13 -51.86 -1.51 -1.57 16 10 N -0.19 -2.95 11.46 32.84 0.38 -2.58 16 11 N -0.25 -4.34 10.44 31.38 0.33 -4.01 16 12 C 0.31 5.43 5.64 -154.85 -0.87 4.55 16 13 N -0.46 -8.93 2.84 -172.85 -0.49 -9.42 16 14 C 0.06 1.15 4.94 -3.84 -0.02 1.13 16 15 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 16 C -0.11 -2.64 5.02 -26.61 -0.13 -2.77 16 17 C 0.06 1.49 2.26 -91.69 -0.21 1.28 16 18 H 0.04 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.52 -14.06 8.57 -34.44 -0.29 -14.35 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 21 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 22 N -0.89 -24.94 11.35 55.43 0.63 -24.32 16 23 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.08 1.78 4.30 -3.83 -0.02 1.77 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.17 1.41 7.77 -52.49 -0.41 1.01 16 34 H 0.05 0.96 7.81 -51.93 -0.41 0.56 16 35 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.10 2.48 6.15 -51.93 -0.32 2.16 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 42 H 0.04 0.83 8.14 -51.92 -0.42 0.40 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -29.73 365.23 -8.64 -38.36 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.74 Total: -1.85 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.03 Total: -2.98 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.84 Total: -40.33 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.67 Total: -13.23 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.51 Total: -1.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.73 -8.64 -38.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.958 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds