Wall clock time and date at job start Tue Mar 31 2020 23:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47178 * 2 1 4 4 C 1.34723 * 116.99900 * 180.02562 * 3 2 1 5 5 O 1.21488 * 120.00251 * 359.97438 * 4 3 2 6 6 C 1.47609 * 120.00253 * 180.02562 * 4 3 2 7 7 C 1.40102 * 121.18450 * 5.39848 * 6 4 3 8 8 C 1.38597 * 117.88304 * 179.97438 * 7 6 4 9 9 Cl 1.73601 * 119.92123 * 180.02562 * 8 7 6 10 10 N 1.31969 * 120.16416 * 0.02562 * 8 7 6 11 11 N 1.28270 * 122.65596 * 359.97438 * 10 8 7 12 12 C 1.32648 * 122.20897 * 359.72006 * 11 10 8 13 13 N 1.38329 * 120.26896 * 180.28033 * 12 11 10 14 14 C 1.46842 * 111.00531 * 37.18499 * 13 12 11 15 15 C 1.53031 * 109.52923 * 174.16329 * 14 13 12 16 16 C 1.53124 * 109.27857 * 59.17880 * 15 14 13 17 17 C 1.53117 * 109.15890 * 302.34778 * 16 15 14 18 18 H 1.08991 * 109.50815 * 297.71183 * 17 16 15 19 19 C 1.50707 * 109.50381 * 177.62920 * 17 16 15 20 20 H 1.07994 * 120.00345 * 240.00519 * 19 17 16 21 21 C 1.37878 * 119.99299 * 60.00391 * 19 17 16 22 22 N 1.31517 * 120.00482 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99774 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47243 * 59.99528 * 23 21 19 25 25 H 1.48494 * 109.47209 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47018 * 299.99852 * 23 21 19 27 27 C 1.46856 * 110.99823 * 272.97496 * 13 12 11 28 28 H 1.09004 * 109.47566 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47237 * 300.00603 * 1 2 3 30 30 H 1.09003 * 109.46917 * 59.99926 * 1 2 3 31 31 H 1.09003 * 109.46917 * 120.00073 * 2 1 3 32 32 H 1.08997 * 109.46601 * 240.00073 * 2 1 3 33 33 H 1.07996 * 121.05806 * 0.02562 * 7 6 4 34 34 H 1.09003 * 109.45948 * 294.18423 * 14 13 12 35 35 H 1.09003 * 109.45891 * 54.14428 * 14 13 12 36 36 H 1.08993 * 109.50742 * 179.12043 * 15 14 13 37 37 H 1.08999 * 109.50392 * 299.24325 * 15 14 13 38 38 H 1.09001 * 109.51999 * 62.24949 * 16 15 14 39 39 H 1.08994 * 109.52518 * 182.44626 * 16 15 14 40 40 H 0.96996 * 119.99986 * 179.97438 * 22 21 19 41 41 H 1.08999 * 109.46178 * 305.86177 * 27 13 12 42 42 H 1.09007 * 109.45678 * 65.82338 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3496 1.5454 -0.0005 5 8 4.0897 0.5820 -0.0005 6 6 3.9139 2.9094 0.0000 7 6 3.0887 4.0358 0.1138 8 6 3.6911 5.2840 0.1073 9 17 2.7188 6.7155 0.2460 10 7 5.0020 5.3870 -0.0040 11 7 5.7702 4.3651 -0.1090 12 6 5.3006 3.1246 -0.1078 13 7 6.1663 2.0512 -0.2177 14 6 7.4141 2.3045 0.5138 15 6 8.2839 1.0456 0.4928 16 6 8.5894 0.6664 -0.9590 17 6 7.2725 0.4553 -1.7110 18 1 6.7245 -0.3720 -1.2603 19 6 7.5631 0.1387 -3.1555 20 1 7.1838 0.7814 -3.9361 21 6 8.3132 -0.9716 -3.4803 22 7 8.7755 -1.7541 -2.5297 23 14 8.6741 -1.3638 -5.2707 24 1 9.4193 -0.2353 -5.8842 25 1 9.4936 -2.5995 -5.3512 26 1 7.3967 -1.5681 -5.9999 27 6 6.4320 1.7314 -1.6261 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 2.0173 3.9347 0.2046 34 1 7.9523 3.1257 0.0405 35 1 7.1829 2.5689 1.5457 36 1 9.2167 1.2388 1.0224 37 1 7.7519 0.2274 0.9782 38 1 9.1554 1.4681 -1.4334 39 1 9.1724 -0.2543 -0.9801 40 1 9.3029 -2.5354 -2.7583 41 1 5.4874 1.5797 -2.1485 42 1 6.9748 2.5554 -2.0894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:55 Heat of formation + Delta-G solvation = -34.449280 kcal Electronic energy + Delta-G solvation = -27819.850666 eV Core-core repulsion = 23826.323118 eV Total energy + Delta-G solvation = -3993.527548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.83255 -41.19492 -40.00039 -38.05252 -37.67842 -36.00691 -34.93493 -34.01360 -32.52257 -31.89742 -31.48695 -27.48535 -26.93961 -26.41487 -24.38681 -23.72858 -23.27401 -22.55965 -20.66508 -19.74580 -18.95221 -18.89537 -17.99169 -17.70783 -17.65501 -16.85120 -16.64055 -16.47819 -15.70526 -15.63112 -15.28792 -15.02898 -14.65904 -14.53398 -14.43001 -14.17460 -13.62136 -13.50924 -13.31757 -13.00294 -12.92490 -12.84650 -12.74362 -12.66747 -12.58589 -12.48793 -11.96646 -11.91721 -11.84398 -11.71335 -11.53629 -11.50195 -11.29607 -11.09084 -10.84257 -10.71485 -10.39710 -9.55947 -8.09479 -6.24131 -1.16158 -0.67998 0.32998 1.21355 1.30591 1.41283 1.42572 1.50207 2.02501 2.22316 2.44261 2.75155 3.08844 3.17815 3.28193 3.48390 3.73496 3.94036 4.04500 4.08263 4.11672 4.17087 4.25356 4.39776 4.43567 4.50302 4.55968 4.77290 4.81415 4.84356 4.97340 4.97620 5.04833 5.12877 5.27792 5.38098 5.43419 5.60440 5.66725 5.96434 6.02872 6.11351 6.34884 6.60103 6.85399 7.11567 7.43319 8.95333 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.003823 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.900061 B = 7322.624961 C = 8668.515935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 O -0.348 6.348 4 C 0.507 3.493 5 O -0.474 6.474 6 C -0.107 4.107 7 C -0.011 4.011 8 C 0.089 3.911 9 Cl 0.027 6.973 10 N -0.210 5.210 11 N -0.271 5.271 12 C 0.295 3.705 13 N -0.471 5.471 14 C 0.069 3.931 15 C -0.107 4.107 16 C -0.105 4.105 17 C 0.062 3.938 18 H 0.002 0.998 19 C -0.540 4.540 20 H 0.050 0.950 21 C 0.020 3.980 22 N -0.911 5.911 23 Si 0.954 3.046 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.273 1.273 27 C 0.102 3.898 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.214 0.786 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.066 0.934 40 H 0.262 0.738 41 H 0.050 0.950 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.765 10.831 8.363 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.018 4.018 3 O -0.265 6.265 4 C 0.347 3.653 5 O -0.358 6.358 6 C -0.121 4.121 7 C -0.040 4.040 8 C -0.084 4.084 9 Cl 0.055 6.945 10 N -0.056 5.056 11 N -0.119 5.119 12 C 0.059 3.941 13 N -0.193 5.193 14 C -0.058 4.058 15 C -0.145 4.145 16 C -0.143 4.143 17 C 0.043 3.957 18 H 0.021 0.979 19 C -0.578 4.578 20 H 0.068 0.932 21 C -0.180 4.180 22 N -0.550 5.550 23 Si 0.779 3.221 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.198 1.198 27 C -0.022 4.022 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.231 0.769 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.417 10.983 8.521 21.512 hybrid contribution -0.292 -0.837 -1.193 1.486 sum -16.710 10.146 7.328 20.877 Atomic orbital electron populations 1.21822 0.89448 1.04489 1.04155 1.23363 0.97427 0.78419 1.02607 1.86469 1.21568 1.34275 1.84238 1.20395 0.81694 0.88455 0.74750 1.91062 1.60643 1.41797 1.42317 1.20165 0.92564 0.93150 1.06270 1.22915 1.04271 0.87798 0.89048 1.23497 0.91744 0.90803 1.02340 1.98441 1.65354 1.35094 1.95641 1.72518 1.03355 1.23643 1.06112 1.73698 1.28886 0.95700 1.13584 1.21814 0.91856 0.90222 0.90209 1.59638 1.15355 1.29501 1.14808 1.22112 0.88099 0.97962 0.97588 1.21581 0.98707 0.96304 0.97864 1.21498 0.99200 1.00314 0.93295 1.18511 0.91918 0.90649 0.94605 0.97946 1.21373 1.33607 1.10216 0.92645 0.93211 1.25663 0.95376 0.95756 1.01195 1.70017 1.36100 1.15398 1.33482 0.85679 0.78269 0.77626 0.80479 1.19641 1.20684 1.19780 1.22015 0.98793 0.98706 0.82710 0.88386 0.90403 0.90974 0.91118 0.92039 0.76895 0.93136 0.90059 0.90007 0.92933 0.95247 0.91592 0.92898 0.93161 0.95192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 10.29 71.98 0.74 -0.93 16 2 C 0.06 1.10 6.19 71.98 0.45 1.55 16 3 O -0.35 -8.04 9.63 -56.33 -0.54 -8.58 16 4 C 0.51 15.37 7.90 70.30 0.56 15.93 16 5 O -0.47 -18.56 14.73 19.88 0.29 -18.26 16 6 C -0.11 -3.05 5.93 -19.74 -0.12 -3.17 16 7 C -0.01 -0.22 9.57 22.81 0.22 0.00 16 8 C 0.09 1.98 7.35 84.76 0.62 2.60 16 9 Cl 0.03 0.44 29.13 -2.72 -0.08 0.36 16 10 N -0.21 -6.16 11.46 -50.00 -0.57 -6.73 16 11 N -0.27 -9.14 10.44 -54.64 -0.57 -9.71 16 12 C 0.30 10.14 5.64 133.61 0.75 10.90 16 13 N -0.47 -18.63 2.84 -700.77 -1.99 -20.63 16 14 C 0.07 2.53 4.94 86.32 0.43 2.96 16 15 C -0.11 -4.24 6.09 30.65 0.19 -4.06 16 16 C -0.10 -5.11 5.02 30.67 0.15 -4.96 16 17 C 0.06 3.26 2.26 -11.49 -0.03 3.23 16 18 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 19 C -0.54 -30.49 8.57 25.60 0.22 -30.27 16 20 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 21 C 0.02 1.10 5.30 84.65 0.45 1.55 16 22 N -0.91 -53.12 11.35 21.45 0.24 -52.88 16 23 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 27 C 0.10 4.63 4.30 86.32 0.37 5.01 16 28 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.21 2.47 7.77 -2.91 -0.02 2.45 16 34 H 0.05 1.87 7.81 -2.39 -0.02 1.85 16 35 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 36 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 3.60 6.15 -2.39 -0.01 3.58 16 40 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 41 H 0.05 2.31 8.10 -2.39 -0.02 2.29 16 42 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -67.63 365.23 4.85 -62.79 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.04 Total: 7.28 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.00 Total: 0.33 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -2.89 Total: -89.95 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.25 Total: -26.85 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -0.08 Total: 0.36 kcal Total: -67.63 4.85 -62.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.339 kcal (2) G-P(sol) polarization free energy of solvation -67.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds