Wall clock time and date at job start Tue Mar 31 2020 23:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.47359 * 2 1 4 4 C 1.34766 * 117.00194 * 180.02562 * 3 2 1 5 5 O 1.21523 * 120.00357 * 0.02562 * 4 3 2 6 6 C 1.47251 * 119.99998 * 179.97438 * 4 3 2 7 7 C 1.39860 * 120.98387 * 355.04015 * 6 4 3 8 8 N 1.32153 * 119.00384 * 180.02562 * 7 6 4 9 9 C 1.32131 * 121.18717 * 0.02562 * 8 7 6 10 10 Cl 1.73605 * 118.89251 * 179.71589 * 9 8 7 11 11 N 1.31815 * 122.21575 * 359.97438 * 9 8 7 12 12 C 1.32948 * 120.83183 * 0.02562 * 11 9 8 13 13 N 1.37836 * 120.63572 * 180.02562 * 12 11 9 14 14 C 1.46853 * 110.99881 * 35.56481 * 13 12 11 15 15 C 1.53039 * 109.52699 * 174.15991 * 14 13 12 16 16 C 1.53121 * 109.27876 * 59.17526 * 15 14 13 17 17 C 1.53117 * 109.16210 * 302.35002 * 16 15 14 18 18 H 1.08997 * 109.50671 * 297.71353 * 17 16 15 19 19 C 1.50698 * 109.50336 * 177.63247 * 17 16 15 20 20 H 1.08004 * 119.99931 * 245.57967 * 19 17 16 21 21 C 1.37882 * 119.99892 * 65.57925 * 19 17 16 22 22 N 1.31507 * 119.99902 * 355.18479 * 21 19 17 23 23 Si 1.86803 * 119.99722 * 175.18026 * 21 19 17 24 24 H 1.48504 * 109.46598 * 95.00197 * 23 21 19 25 25 H 1.48500 * 109.47076 * 214.99731 * 23 21 19 26 26 H 1.48499 * 109.47258 * 335.00343 * 23 21 19 27 27 C 1.46851 * 111.00687 * 271.35321 * 13 12 11 28 28 H 1.08999 * 109.47331 * 59.99297 * 1 2 3 29 29 H 1.08998 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46418 * 299.99511 * 1 2 3 31 31 H 1.09010 * 109.46816 * 240.00354 * 2 1 3 32 32 H 1.08999 * 109.47331 * 120.00703 * 2 1 3 33 33 H 1.07991 * 120.49930 * 359.97438 * 7 6 4 34 34 H 1.08997 * 109.45902 * 294.17337 * 14 13 12 35 35 H 1.09001 * 109.46237 * 54.14199 * 14 13 12 36 36 H 1.08997 * 109.50149 * 179.12108 * 15 14 13 37 37 H 1.09005 * 109.50125 * 299.23846 * 15 14 13 38 38 H 1.09004 * 109.51684 * 62.25176 * 16 15 14 39 39 H 1.08996 * 109.52451 * 182.44068 * 16 15 14 40 40 H 0.97005 * 119.99903 * 180.02562 * 22 21 19 41 41 H 1.08992 * 109.45892 * 305.85900 * 27 13 12 42 42 H 1.09001 * 109.45924 * 65.81904 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5455 -0.0005 5 8 4.0904 0.5818 -0.0015 6 6 3.9129 2.9062 -0.0011 7 6 3.0842 4.0281 -0.1048 8 7 3.6311 5.2311 -0.1020 9 6 4.9394 5.3877 -0.0038 10 17 5.5948 6.9953 -0.0135 11 7 5.7641 4.3643 0.0963 12 6 5.3045 3.1168 0.1018 13 7 6.1705 2.0497 0.2071 14 6 7.3007 2.3740 1.0868 15 6 8.1606 1.1254 1.2962 16 6 8.6708 0.6297 -0.0597 17 6 7.4753 0.3452 -0.9731 18 1 6.8654 -0.4467 -0.5383 19 6 7.9700 -0.0878 -2.3291 20 1 7.7858 0.5319 -3.1943 21 6 8.6578 -1.2750 -2.4652 22 7 8.9648 -1.9829 -1.4003 23 14 9.1533 -1.8780 -4.1624 24 1 10.5448 -1.4487 -4.4534 25 1 9.0738 -3.3603 -4.2038 26 1 8.2354 -1.3044 -5.1791 27 6 6.6353 1.6163 -1.1168 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0136 3.9129 -0.1869 34 1 7.9040 3.1578 0.6289 35 1 6.9241 2.7212 2.0490 36 1 9.0080 1.3704 1.9365 37 1 7.5615 0.3457 1.7668 38 1 9.3018 1.3943 -0.5130 39 1 9.2480 -0.2842 0.0803 40 1 9.4490 -2.8180 -1.4960 41 1 5.7755 1.4133 -1.7550 42 1 7.2418 2.4037 -1.5644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:39 Heat of formation + Delta-G solvation = -45.653635 kcal Electronic energy + Delta-G solvation = -27881.565476 eV Core-core repulsion = 23887.552070 eV Total energy + Delta-G solvation = -3994.013406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.78931 -41.05497 -40.02798 -38.13122 -37.56542 -36.23861 -34.67869 -34.00816 -32.70741 -31.85470 -31.82450 -27.14431 -26.72598 -26.42282 -24.34895 -23.65122 -23.26994 -22.43300 -20.65584 -19.55261 -19.34899 -18.68676 -18.15151 -17.64203 -17.61256 -16.85093 -16.73148 -16.31768 -15.71301 -15.39215 -15.33151 -14.97613 -14.78856 -14.54793 -14.46169 -14.15293 -13.56979 -13.49233 -13.16160 -13.09892 -12.90156 -12.80436 -12.75033 -12.69596 -12.64778 -12.44905 -12.21268 -11.94052 -11.78065 -11.55105 -11.47065 -11.43926 -11.20984 -10.84327 -10.79719 -10.70973 -10.39182 -9.72898 -8.11246 -6.24230 -1.07810 -0.39362 0.08297 1.35160 1.39999 1.41123 1.47657 1.51633 2.14230 2.31513 2.43820 2.77675 3.17492 3.18119 3.43415 3.53607 3.84823 4.06538 4.07985 4.12308 4.16875 4.23595 4.41908 4.43849 4.53369 4.68711 4.76338 4.79942 4.87930 4.94208 5.00658 5.03451 5.15890 5.19836 5.37323 5.41397 5.47598 5.59514 5.67663 5.94998 6.02720 6.07872 6.33912 6.42348 6.73811 6.86063 7.43030 8.95020 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.004397 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.351949 B = 6366.123046 C = 8433.551887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.057 3.943 3 O -0.349 6.349 4 C 0.513 3.487 5 O -0.488 6.488 6 C -0.233 4.233 7 C 0.251 3.749 8 N -0.525 5.525 9 C 0.398 3.602 10 Cl 0.046 6.954 11 N -0.558 5.558 12 C 0.417 3.583 13 N -0.475 5.475 14 C 0.070 3.930 15 C -0.108 4.108 16 C -0.102 4.102 17 C 0.063 3.937 18 H 0.004 0.996 19 C -0.538 4.538 20 H 0.049 0.951 21 C 0.019 3.981 22 N -0.912 5.912 23 Si 0.953 3.047 24 H -0.274 1.274 25 H -0.281 1.281 26 H -0.270 1.270 27 C 0.108 3.892 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.235 0.765 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.031 0.969 39 H 0.059 0.941 40 H 0.262 0.738 41 H 0.052 0.948 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.725 12.235 5.266 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.017 4.017 3 O -0.267 6.267 4 C 0.354 3.646 5 O -0.374 6.374 6 C -0.241 4.241 7 C 0.085 3.915 8 N -0.243 5.243 9 C 0.104 3.896 10 Cl 0.074 6.926 11 N -0.280 5.280 12 C 0.179 3.821 13 N -0.195 5.195 14 C -0.056 4.056 15 C -0.145 4.145 16 C -0.141 4.141 17 C 0.044 3.956 18 H 0.022 0.978 19 C -0.576 4.576 20 H 0.068 0.932 21 C -0.180 4.180 22 N -0.551 5.551 23 Si 0.779 3.221 24 H -0.200 1.200 25 H -0.207 1.207 26 H -0.195 1.195 27 C -0.016 4.016 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.251 0.749 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -15.189 12.362 5.526 20.348 hybrid contribution 0.902 -0.919 -1.090 1.687 sum -14.287 11.443 4.436 18.835 Atomic orbital electron populations 1.21810 0.89532 1.04363 1.04143 1.23296 0.97323 0.78716 1.02352 1.86462 1.21831 1.33909 1.84499 1.20291 0.81459 0.88560 0.74243 1.91063 1.60610 1.42249 1.43461 1.20722 0.93548 0.94591 1.15239 1.24217 1.02329 0.83117 0.81822 1.68139 1.11069 1.26871 1.18227 1.23440 0.86454 0.89540 0.90160 1.98453 1.84609 1.14037 1.95467 1.68272 1.40914 0.99139 1.19714 1.20350 0.91239 0.86804 0.83663 1.59521 1.18726 1.26742 1.14465 1.22096 0.90344 0.97632 0.95559 1.21594 0.98554 0.96224 0.98173 1.21492 0.98863 0.99655 0.94056 1.18513 0.91919 0.90610 0.94598 0.97776 1.21378 1.36214 1.05954 0.94077 0.93237 1.25666 0.95605 0.96653 1.00091 1.70045 1.40145 1.14961 1.29903 0.85620 0.78578 0.77536 0.80378 1.20009 1.20700 1.19456 1.21959 0.97283 0.97874 0.84467 0.90772 0.88567 0.90604 0.92053 0.91658 0.74868 0.92862 0.90118 0.89916 0.93042 0.95039 0.92194 0.92930 0.92966 0.95193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 10.29 71.98 0.74 -0.99 16 2 C 0.06 1.17 6.20 71.98 0.45 1.62 16 3 O -0.35 -8.20 9.58 -56.77 -0.54 -8.75 16 4 C 0.51 15.84 7.89 70.19 0.55 16.39 16 5 O -0.49 -19.59 14.12 19.76 0.28 -19.31 16 6 C -0.23 -6.68 5.92 -19.81 -0.12 -6.80 16 7 C 0.25 5.31 10.89 85.04 0.93 6.24 16 8 N -0.52 -12.52 10.38 -189.77 -1.97 -14.49 16 9 C 0.40 10.76 8.17 180.78 1.48 12.23 16 10 Cl 0.05 1.04 29.26 -2.72 -0.08 0.96 16 11 N -0.56 -17.68 9.31 -187.56 -1.75 -19.43 16 12 C 0.42 14.15 5.60 133.78 0.75 14.90 16 13 N -0.47 -18.61 3.00 -700.60 -2.10 -20.71 16 14 C 0.07 2.52 4.92 86.33 0.42 2.95 16 15 C -0.11 -4.22 6.09 30.65 0.19 -4.03 16 16 C -0.10 -4.94 5.08 30.67 0.16 -4.79 16 17 C 0.06 3.28 2.20 -11.49 -0.03 3.25 16 18 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 19 C -0.54 -30.37 8.49 25.60 0.22 -30.15 16 20 H 0.05 2.75 7.75 -2.91 -0.02 2.73 16 21 C 0.02 1.09 5.36 84.66 0.45 1.54 16 22 N -0.91 -53.35 11.58 21.45 0.25 -53.11 16 23 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 27 C 0.11 4.89 4.03 86.32 0.35 5.24 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.24 2.83 7.71 -2.92 -0.02 2.81 16 34 H 0.05 1.92 7.82 -2.39 -0.02 1.90 16 35 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 36 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.06 3.25 6.41 -2.39 -0.02 3.23 16 40 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 41 H 0.05 2.43 7.70 -2.39 -0.02 2.41 16 42 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -67.37 364.46 3.69 -63.69 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 1.04 Total: 7.41 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 6.54 Total: 17.60 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -5.57 Total: -107.74 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.26 Total: -28.06 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 17 Polarization: 1.04 SS G_CDS: -0.08 Total: 0.96 kcal Total: -67.37 3.69 -63.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.032 kcal (2) G-P(sol) polarization free energy of solvation -67.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds