Wall clock time and date at job start Tue Mar 31 2020 23:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45208 * 109.46572 * 2 1 4 4 C 1.34712 * 116.99614 * 180.02562 * 3 2 1 5 5 O 1.21453 * 120.00209 * 359.97438 * 4 3 2 6 6 C 1.47877 * 119.99926 * 180.02562 * 4 3 2 7 7 N 1.33357 * 120.61598 * 354.56136 * 6 4 3 8 8 C 1.31344 * 120.85440 * 179.97438 * 7 6 4 9 9 N 1.32060 * 122.19172 * 0.02562 * 8 7 6 10 10 C 1.32016 * 121.14410 * 359.97438 * 9 8 7 11 11 Cl 1.73603 * 120.49908 * 179.97438 * 10 9 8 12 12 C 1.40044 * 119.00448 * 0.25140 * 10 9 8 13 13 N 1.38861 * 120.98089 * 179.75188 * 12 10 9 14 14 C 1.46852 * 110.99417 * 298.88358 * 13 12 10 15 15 C 1.53044 * 109.52035 * 185.84230 * 14 13 12 16 16 C 1.53117 * 109.27628 * 300.81869 * 15 14 13 17 17 C 1.53121 * 109.16005 * 57.65646 * 16 15 14 18 18 H 1.09008 * 109.50416 * 62.28705 * 17 16 15 19 19 C 1.50707 * 109.53495 * 182.38255 * 17 16 15 20 20 H 1.08003 * 119.99372 * 119.82604 * 19 17 16 21 21 C 1.37874 * 120.00142 * 299.82264 * 19 17 16 22 22 N 1.31520 * 119.99692 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 119.99957 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47193 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47044 * 120.00259 * 23 21 19 26 26 H 1.48501 * 109.46801 * 239.99822 * 23 21 19 27 27 C 1.46841 * 111.00321 * 63.09143 * 13 12 10 28 28 H 1.09003 * 109.47614 * 299.99462 * 1 2 3 29 29 H 1.08995 * 109.47172 * 60.00023 * 1 2 3 30 30 H 1.09005 * 109.46718 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47337 * 240.00700 * 2 1 3 32 32 H 1.08999 * 109.47462 * 119.99559 * 2 1 3 33 33 H 1.07995 * 118.90399 * 179.97438 * 8 7 6 34 34 H 1.09004 * 109.46343 * 305.85251 * 14 13 12 35 35 H 1.08996 * 109.46158 * 65.82884 * 14 13 12 36 36 H 1.08999 * 109.50473 * 180.88153 * 15 14 13 37 37 H 1.08999 * 109.53655 * 60.78402 * 15 14 13 38 38 H 1.08995 * 109.52565 * 297.75213 * 16 15 14 39 39 H 1.09004 * 109.52155 * 177.55941 * 16 15 14 40 40 H 0.97004 * 119.99749 * 180.02562 * 22 21 19 41 41 H 1.08998 * 109.46610 * 294.17950 * 27 13 12 42 42 H 1.08997 * 109.46018 * 54.14794 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3494 1.5456 -0.0005 5 8 4.0893 0.5825 -0.0005 6 6 3.9145 2.9121 0.0000 7 7 3.1183 3.9765 -0.1078 8 6 3.6152 5.1923 -0.1073 9 7 4.9113 5.4226 -0.0021 10 6 5.7743 4.4298 0.1090 11 17 7.4748 4.7517 0.2456 12 6 5.2981 3.1128 0.1090 13 7 6.1699 2.0375 0.2184 14 6 7.1161 2.0110 -0.9042 15 6 7.9624 0.7380 -0.8298 16 6 8.7194 0.7114 0.5009 17 6 7.7137 0.7888 1.6528 18 1 7.0605 -0.0835 1.6250 19 6 8.4528 0.8221 2.9658 20 1 8.3360 1.6658 3.6299 21 6 9.2780 -0.2244 3.3191 22 7 9.4197 -1.2520 2.5105 23 14 10.1936 -0.1834 4.9468 24 1 9.8653 1.0726 5.6679 25 1 9.7881 -1.3492 5.7723 26 1 11.6558 -0.2407 4.6937 27 6 6.8746 2.0602 1.5064 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.9414 6.0316 -0.1967 34 1 6.5648 2.0261 -1.8444 35 1 7.7672 2.8836 -0.8511 36 1 8.6753 0.7262 -1.6543 37 1 7.3138 -0.1353 -0.8971 38 1 9.3974 1.5633 0.5514 39 1 9.2899 -0.2144 0.5769 40 1 10.0000 -1.9884 2.7593 41 1 7.5268 2.9326 1.5483 42 1 6.1479 2.1111 2.3172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740907.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:46 Heat of formation + Delta-G solvation = -20.750141 kcal Electronic energy + Delta-G solvation = -28172.736993 eV Core-core repulsion = 24179.803484 eV Total energy + Delta-G solvation = -3992.933509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.63869 -39.96097 -38.59372 -36.98092 -36.45287 -34.27056 -34.03682 -32.25433 -31.72067 -30.07783 -29.69667 -26.15659 -25.02507 -24.90407 -23.29889 -22.26789 -21.53766 -21.52173 -19.23235 -18.64549 -17.94838 -16.98370 -16.70510 -16.58324 -15.77887 -15.62383 -15.39597 -14.58298 -14.55251 -14.30189 -13.99275 -13.77620 -13.49982 -12.97203 -12.87209 -12.82389 -12.67756 -12.25602 -11.95830 -11.92365 -11.69862 -11.59818 -11.19976 -10.99044 -10.83030 -10.72661 -10.64844 -10.62099 -10.49037 -10.14047 -9.94274 -9.83979 -9.52287 -9.39634 -9.14912 -8.72977 -8.33141 -7.87262 -5.99018 -4.05274 0.12613 0.45470 1.36421 2.41651 2.45196 3.29133 3.37423 3.40759 3.45320 3.68265 3.78622 3.96198 4.26279 4.44304 4.83185 4.86299 4.91366 5.03935 5.21237 5.31416 5.49611 5.56034 5.66440 5.67810 5.75850 5.84712 5.93000 6.08954 6.24144 6.30443 6.38523 6.38847 6.62519 6.68216 6.86281 7.08272 7.29112 7.39041 7.52325 7.59881 7.74801 7.86241 8.05767 8.14354 8.43246 8.98246 9.59046 11.07075 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.004503 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.691109 B = 6216.602729 C = 7792.113838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.343 6.343 4 C 0.512 3.488 5 O -0.428 6.428 6 C 0.165 3.835 7 N -0.465 5.465 8 C 0.295 3.705 9 N -0.493 5.493 10 C 0.184 3.816 11 Cl 0.015 6.985 12 C 0.092 3.908 13 N -0.481 5.481 14 C 0.055 3.945 15 C -0.113 4.113 16 C -0.110 4.110 17 C 0.061 3.939 18 H 0.039 0.961 19 C -0.515 4.515 20 H 0.054 0.946 21 C 0.065 3.935 22 N -0.886 5.886 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.060 3.940 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.213 0.787 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.094 0.906 40 H 0.259 0.741 41 H 0.044 0.956 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.265 8.475 -8.210 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.260 6.260 4 C 0.350 3.650 5 O -0.308 6.308 6 C 0.019 3.981 7 N -0.182 5.182 8 C 0.007 3.993 9 N -0.210 5.210 10 C 0.005 3.995 11 Cl 0.044 6.956 12 C -0.010 4.010 13 N -0.202 5.202 14 C -0.070 4.070 15 C -0.151 4.151 16 C -0.148 4.148 17 C 0.042 3.958 18 H 0.058 0.942 19 C -0.553 4.553 20 H 0.072 0.928 21 C -0.136 4.136 22 N -0.524 5.524 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.063 4.063 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.229 0.771 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.697 8.221 -8.303 18.003 hybrid contribution 1.645 0.136 1.013 1.937 sum -12.052 8.357 -7.290 16.377 Atomic orbital electron populations 1.21784 0.92610 1.02819 1.03489 1.23084 0.95273 0.79939 1.03004 1.86624 1.22916 1.32183 1.84250 1.20111 0.81272 0.87768 0.75853 1.91046 1.59805 1.39725 1.40193 1.20602 0.88139 0.91841 0.97495 1.68440 1.39470 0.99222 1.11031 1.24910 0.88106 0.93729 0.92552 1.67623 1.04370 1.36740 1.12266 1.23752 0.89673 0.89974 0.96132 1.98459 1.06801 1.95581 1.94757 1.20458 0.94376 0.89978 0.96195 1.59518 1.20276 1.34799 1.05655 1.22380 0.93281 1.00243 0.91110 1.21644 0.97715 0.96037 0.99668 1.21660 0.98553 1.02718 0.91858 1.18637 0.92261 0.91169 0.93725 0.94249 1.21123 1.26589 1.04684 1.02941 0.92779 1.24902 0.96620 0.95343 0.96780 1.69905 1.38351 1.08195 1.35992 0.86584 0.79601 0.77974 0.84122 1.19853 1.21032 1.21059 1.22711 0.95985 1.02249 0.85399 0.91469 0.91544 0.90255 0.91054 0.90821 0.77080 0.92400 0.93497 0.92979 0.91526 0.94968 0.88819 0.93071 0.93792 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.68 6.20 37.16 0.23 0.91 16 3 O -0.34 -4.86 10.08 -40.52 -0.41 -5.27 16 4 C 0.51 8.43 7.95 34.68 0.28 8.71 16 5 O -0.43 -8.16 14.96 -19.23 -0.29 -8.45 16 6 C 0.17 2.64 6.80 -82.51 -0.56 2.07 16 7 N -0.46 -6.39 10.25 -11.09 -0.11 -6.50 16 8 C 0.29 3.42 12.26 -92.31 -1.13 2.29 16 9 N -0.49 -6.77 10.40 -11.49 -0.12 -6.89 16 10 C 0.18 2.85 7.01 -16.80 -0.12 2.74 16 11 Cl 0.02 0.23 23.25 -51.86 -1.21 -0.97 16 12 C 0.09 1.55 4.68 -83.25 -0.39 1.16 16 13 N -0.48 -9.10 2.71 -170.63 -0.46 -9.56 16 14 C 0.06 0.97 5.05 -3.83 -0.02 0.96 16 15 C -0.11 -2.18 6.09 -26.65 -0.16 -2.34 16 16 C -0.11 -2.53 5.03 -26.61 -0.13 -2.67 16 17 C 0.06 1.51 2.26 -91.69 -0.21 1.30 16 18 H 0.04 1.10 8.14 -51.92 -0.42 0.68 16 19 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16 20 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 22 N -0.89 -24.96 11.37 55.43 0.63 -24.33 16 23 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 C 0.06 1.28 4.30 -3.84 -0.02 1.27 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.21 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.05 0.80 5.08 -51.93 -0.26 0.53 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.04 0.90 5.29 -51.93 -0.27 0.63 16 42 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -30.00 355.79 -9.34 -39.34 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.47 Total: -1.87 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.24 Total: 3.07 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.07 Total: -47.29 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.70 Total: -13.72 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.21 Total: -0.97 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.00 -9.34 -39.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740907.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.588 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds