Wall clock time and date at job start Tue Mar 31 2020 23:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45205 * 109.46661 * 2 1 4 4 C 1.34224 * 116.99678 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00261 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99930 * 180.02562 * 4 3 2 7 7 C 1.53009 * 109.47459 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.46876 * 54.99540 * 7 6 4 9 9 C 1.50696 * 109.47104 * 175.00086 * 7 6 4 10 10 H 1.08008 * 119.99726 * 239.99468 * 9 7 6 11 11 C 1.37874 * 120.00559 * 59.99684 * 9 7 6 12 12 N 1.31516 * 119.99846 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00272 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46679 * 60.00644 * 13 11 9 15 15 H 1.48500 * 109.47262 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47314 * 300.00469 * 13 11 9 17 17 O 1.42901 * 109.46380 * 295.00013 * 7 6 4 18 18 C 1.35902 * 116.99626 * 155.92031 * 17 7 6 19 19 C 1.38796 * 120.02712 * 5.35305 * 18 17 7 20 20 C 1.38153 * 120.05609 * 179.97438 * 19 18 17 21 21 C 1.38203 * 120.10669 * 0.04794 * 20 19 18 22 22 N 1.47999 * 119.97090 * 179.97438 * 21 20 19 23 23 O 1.21803 * 120.00016 * 0.02562 * 22 21 20 24 24 O 1.21804 * 120.00108 * 180.02562 * 22 21 20 25 25 C 1.38753 * 120.05425 * 359.97438 * 21 20 19 26 26 O 1.35894 * 120.02380 * 179.97438 * 25 21 20 27 27 C 1.42904 * 116.99934 * 179.97438 * 26 25 21 28 28 C 1.38610 * 120.02567 * 185.41847 * 18 17 7 29 29 H 1.09004 * 109.46558 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47242 * 299.99689 * 1 2 3 31 31 H 1.08999 * 109.47083 * 60.00501 * 1 2 3 32 32 H 1.08993 * 109.47242 * 240.00311 * 2 1 3 33 33 H 1.08999 * 109.47083 * 119.99499 * 2 1 3 34 34 H 1.09000 * 109.47532 * 59.99864 * 6 4 3 35 35 H 1.09000 * 109.46938 * 299.99515 * 6 4 3 36 36 H 0.96994 * 120.00318 * 180.02562 * 12 11 9 37 37 H 1.07998 * 119.97104 * 0.02562 * 19 18 17 38 38 H 1.07999 * 119.94902 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.47070 * 300.00184 * 27 26 25 40 40 H 1.08997 * 109.46949 * 59.99759 * 27 26 25 41 41 H 1.08999 * 109.47188 * 180.02562 * 27 26 25 42 42 H 1.08003 * 120.05891 * 0.25466 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9205 2.9375 0.0000 7 6 5.4485 2.8576 -0.0001 8 1 5.7805 2.2503 -0.8422 9 6 6.0241 4.2448 -0.1234 10 1 6.6589 4.4936 -0.9611 11 6 5.7404 5.1965 0.8331 12 7 4.9679 4.8934 1.8534 13 14 6.4545 6.9158 0.6806 14 1 5.9915 7.5333 -0.5881 15 1 6.0016 7.7435 1.8274 16 1 7.9374 6.8378 0.6808 17 8 5.8944 2.2636 1.2207 18 6 7.1125 1.6612 1.2048 19 6 7.9107 1.7382 0.0720 20 6 9.1493 1.1265 0.0554 21 6 9.5964 0.4358 1.1659 22 7 10.9235 -0.2188 1.1446 23 8 11.6215 -0.1483 0.1489 24 8 11.3179 -0.8280 2.1228 25 6 8.8019 0.3556 2.3006 26 8 9.2419 -0.3241 3.3920 27 6 8.3719 -0.3651 4.5250 28 6 7.5582 0.9683 2.3195 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.5850 3.4692 0.8904 35 1 3.5842 3.4701 -0.8895 36 1 4.7680 5.5630 2.5261 37 1 7.5636 2.2774 -0.7970 38 1 9.7692 1.1878 -0.8269 39 1 8.1777 0.6502 4.8709 40 1 7.4315 -0.8392 4.2440 41 1 8.8430 -0.9370 5.3244 42 1 6.9364 0.9029 3.2002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225436592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:50 Heat of formation + Delta-G solvation = -157.404419 kcal Electronic energy + Delta-G solvation = -30071.657474 eV Core-core repulsion = 25599.796275 eV Total energy + Delta-G solvation = -4471.861199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.12332 -41.66510 -41.27630 -40.04756 -38.04016 -37.47633 -37.31999 -35.26399 -33.02055 -32.47139 -31.62071 -31.47832 -28.59338 -28.17088 -26.86351 -24.95339 -23.99605 -23.46630 -22.82158 -21.54382 -20.52404 -19.77099 -19.66564 -18.82321 -18.52609 -18.04128 -17.94940 -17.57508 -17.31751 -17.02696 -16.88520 -16.49638 -15.75041 -15.62046 -15.45302 -15.19843 -14.39606 -14.32906 -14.16318 -13.99657 -13.68553 -13.44450 -13.27904 -13.04712 -12.87330 -12.79657 -12.65082 -12.58360 -12.53474 -12.46743 -12.37476 -12.14691 -12.05723 -12.01590 -11.53447 -11.50059 -11.38754 -11.18779 -10.73773 -9.86920 -9.44485 -8.25430 -6.51582 -0.93239 0.04520 0.51455 0.55830 1.29450 1.42562 1.47382 1.51762 1.81639 1.89082 2.33252 2.38708 2.43142 3.12089 3.38870 3.74635 3.88707 3.91016 3.95996 4.00568 4.12125 4.15153 4.28984 4.34412 4.37294 4.41183 4.48477 4.51439 4.66146 4.74268 4.85938 4.92316 4.94871 5.03841 5.13687 5.23640 5.35638 5.41956 5.51718 5.65643 5.84867 5.95408 6.42430 6.74437 6.75032 6.85851 7.29788 8.75103 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008408 B = 0.004249 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.545464 B = 6588.296821 C = 8586.978648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.366 6.366 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.098 4.098 7 C 0.216 3.784 8 H 0.043 0.957 9 C -0.574 4.574 10 H 0.074 0.926 11 C 0.052 3.948 12 N -0.878 5.878 13 Si 0.948 3.052 14 H -0.262 1.262 15 H -0.285 1.285 16 H -0.280 1.280 17 O -0.288 6.288 18 C 0.251 3.749 19 C -0.235 4.235 20 C 0.019 3.981 21 C -0.158 4.158 22 N 0.055 4.945 23 O -0.205 6.205 24 O -0.183 6.183 25 C 0.232 3.768 26 O -0.297 6.297 27 C 0.010 3.990 28 C -0.275 4.275 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.270 0.730 37 H 0.159 0.841 38 H 0.174 0.826 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.136 0.864 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.532 -6.134 0.283 8.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.283 6.283 4 C 0.309 3.691 5 O -0.430 6.430 6 C -0.135 4.135 7 C 0.162 3.838 8 H 0.061 0.939 9 C -0.610 4.610 10 H 0.093 0.907 11 C -0.154 4.154 12 N -0.513 5.513 13 Si 0.774 3.226 14 H -0.187 1.187 15 H -0.210 1.210 16 H -0.205 1.205 17 O -0.197 6.197 18 C 0.198 3.802 19 C -0.254 4.254 20 C 0.001 3.999 21 C -0.244 4.244 22 N 0.563 4.437 23 O -0.411 6.411 24 O -0.395 6.395 25 C 0.182 3.818 26 O -0.208 6.208 27 C -0.083 4.083 28 C -0.295 4.295 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.080 0.920 37 H 0.177 0.823 38 H 0.192 0.808 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.154 0.846 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.042 -6.159 0.645 8.652 hybrid contribution 0.552 0.779 0.080 0.958 sum -5.490 -5.380 0.725 7.721 Atomic orbital electron populations 1.21811 0.90117 1.04375 1.03698 1.23266 0.97337 0.79676 1.02119 1.86548 1.24352 1.33485 1.83940 1.24568 0.80385 0.93507 0.70673 1.90585 1.61007 1.44216 1.47219 1.21685 0.95198 0.89058 1.07576 1.20065 0.90139 0.92317 0.81234 0.93908 1.21588 1.33342 0.95296 1.10785 0.90747 1.25599 0.93844 1.01768 0.94167 1.69925 1.34631 1.35591 1.11166 0.85759 0.78692 0.79953 0.78223 1.18688 1.21030 1.20530 1.86283 1.28642 1.64113 1.40712 1.19362 0.85327 0.83325 0.92140 1.21416 0.95290 1.07801 1.00942 1.20771 0.94736 0.88635 0.95805 1.20376 0.87263 1.17394 0.99403 1.43363 1.02344 0.98408 0.99549 1.94441 1.55101 1.67235 1.24319 1.94505 1.77000 1.41877 1.26089 1.18212 0.89921 0.87874 0.85793 1.86358 1.45493 1.67022 1.21938 1.23601 0.95063 1.03914 0.85761 1.20439 0.97349 1.09684 1.02017 0.87966 0.91516 0.91056 0.91427 0.92123 0.85785 0.85829 0.92026 0.82322 0.80841 0.91365 0.91190 0.84644 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.29 71.98 0.74 -1.70 16 2 C 0.05 1.25 6.19 71.98 0.45 1.70 16 3 O -0.37 -11.91 10.22 -51.36 -0.52 -12.44 16 4 C 0.46 17.49 7.84 71.24 0.56 18.05 16 5 O -0.54 -22.59 15.17 27.04 0.41 -22.18 16 6 C -0.10 -3.85 5.22 29.85 0.16 -3.69 16 7 C 0.22 9.21 1.35 29.85 0.04 9.25 16 8 H 0.04 1.78 6.18 -2.39 -0.01 1.76 16 9 C -0.57 -25.84 7.92 25.60 0.20 -25.64 16 10 H 0.07 3.26 7.81 -2.91 -0.02 3.23 16 11 C 0.05 2.41 5.24 84.65 0.44 2.86 16 12 N -0.88 -42.17 10.93 21.45 0.23 -41.94 16 13 Si 0.95 37.56 29.54 68.60 2.03 39.58 16 14 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 15 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 17 O -0.29 -12.92 8.43 -78.64 -0.66 -13.58 16 18 C 0.25 10.18 6.58 22.49 0.15 10.33 16 19 C -0.23 -8.70 8.69 22.38 0.19 -8.51 16 20 C 0.02 0.67 9.55 22.24 0.21 0.88 16 21 C -0.16 -5.82 6.87 36.49 0.25 -5.57 16 22 N 0.06 2.13 4.45 -46.20 -0.21 1.92 16 23 O -0.20 -7.79 18.44 18.88 0.35 -7.44 16 24 O -0.18 -7.23 17.23 25.61 0.44 -6.79 16 25 C 0.23 8.25 6.67 22.49 0.15 8.40 16 26 O -0.30 -9.52 8.50 -71.17 -0.60 -10.13 16 27 C 0.01 0.22 9.81 113.37 1.11 1.33 16 28 C -0.27 -9.99 8.97 22.46 0.20 -9.79 16 29 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 33 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 34 H 0.12 5.41 6.22 -2.39 -0.01 5.40 16 35 H 0.12 4.33 8.14 -2.39 -0.02 4.32 16 36 H 0.27 12.53 8.31 -92.71 -0.77 11.76 16 37 H 0.16 5.74 5.66 -2.91 -0.02 5.72 16 38 H 0.17 4.99 7.60 -2.91 -0.02 4.97 16 39 H 0.07 1.42 7.67 -2.39 -0.02 1.40 16 40 H 0.07 1.41 7.65 -2.39 -0.02 1.39 16 41 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.16 5.28 6.30 -2.91 -0.02 5.26 16 Total: -1.00 -59.01 365.80 7.39 -51.63 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 1.07 Total: 23.46 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 4.86 Total: -2.10 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.03 Total: -40.02 kcal Atomic # 8 Polarization: -71.96 SS G_CDS: -0.59 Total: -72.55 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.58 kcal Total: -59.01 7.39 -51.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225436592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.778 kcal (2) G-P(sol) polarization free energy of solvation -59.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds