Wall clock time and date at job start Tue Mar 31 2020 23:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45192 * 109.47459 * 2 1 4 4 C 1.34229 * 117.00385 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00019 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.46762 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47557 * 54.51077 * 7 6 4 9 9 C 1.50698 * 109.46891 * 174.51318 * 7 6 4 10 10 H 1.08000 * 120.00293 * 243.93919 * 9 7 6 11 11 C 1.37882 * 120.00117 * 63.94503 * 9 7 6 12 12 N 1.31507 * 119.99769 * 6.73694 * 11 9 7 13 13 Si 1.86805 * 119.99900 * 186.73761 * 11 9 7 14 14 H 1.48494 * 109.47115 * 94.97393 * 13 11 9 15 15 H 1.48498 * 109.46959 * 214.97907 * 13 11 9 16 16 H 1.48506 * 109.47010 * 334.97322 * 13 11 9 17 17 O 1.42902 * 109.46912 * 294.50844 * 7 6 4 18 18 C 1.35901 * 116.99995 * 156.51451 * 17 7 6 19 19 C 1.38649 * 120.02909 * 5.66182 * 18 17 7 20 20 C 1.38616 * 119.89348 * 179.97438 * 19 18 17 21 21 O 1.35896 * 120.02648 * 180.02562 * 20 19 18 22 22 C 1.42902 * 116.99776 * 179.97438 * 21 20 19 23 23 C 1.38787 * 119.94326 * 0.02562 * 20 19 18 24 24 C 1.38162 * 120.05579 * 359.97438 * 23 20 19 25 25 C 1.38190 * 120.10571 * 359.97438 * 24 23 20 26 26 N 1.48009 * 119.97109 * 179.97438 * 25 24 23 27 27 O 1.21799 * 119.99758 * 0.02562 * 26 25 24 28 28 O 1.21799 * 120.00118 * 180.02562 * 26 25 24 29 29 H 1.09005 * 109.47383 * 59.99983 * 1 2 3 30 30 H 1.08997 * 109.47419 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47113 * 300.00090 * 1 2 3 32 32 H 1.09005 * 109.46993 * 240.00224 * 2 1 3 33 33 H 1.08993 * 109.46879 * 120.00507 * 2 1 3 34 34 H 1.08996 * 109.47029 * 60.00146 * 6 4 3 35 35 H 1.08996 * 109.46826 * 299.99727 * 6 4 3 36 36 H 0.96998 * 119.99715 * 180.02562 * 12 11 9 37 37 H 1.08003 * 120.05199 * 0.25775 * 19 18 17 38 38 H 1.08990 * 109.47221 * 299.99971 * 22 21 20 39 39 H 1.09006 * 109.46972 * 60.00474 * 22 21 20 40 40 H 1.09004 * 109.47007 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.97265 * 180.02562 * 23 20 19 42 42 H 1.08001 * 119.94500 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9374 0.0012 7 6 5.4486 2.8572 0.0010 8 1 5.7802 2.2428 -0.8360 9 6 6.0243 4.2433 -0.1342 10 1 6.6061 4.5038 -1.0060 11 6 5.8084 5.1791 0.8552 12 7 5.2155 4.8271 1.9750 13 14 6.3581 6.9468 0.6049 14 1 5.2212 7.7502 0.0883 15 1 6.8150 7.5112 1.9002 16 1 7.4753 6.9840 -0.3728 17 8 5.8950 2.2735 1.2267 18 6 7.1184 1.6818 1.2186 19 6 7.9221 1.7651 0.0919 20 6 9.1697 1.1609 0.0870 21 8 9.9598 1.2413 -1.0158 22 6 11.2329 0.5956 -0.9500 23 6 9.6111 0.4739 1.2091 24 6 8.8084 0.3923 2.3307 25 6 7.5648 0.9947 2.3384 26 7 6.7071 0.9049 3.5413 27 8 7.0978 0.3006 4.5240 28 8 5.6106 1.4352 3.5485 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8932 -0.5139 0.8899 34 1 3.5845 3.4692 0.8912 35 1 3.5852 3.4697 -0.8888 36 1 5.0633 5.4854 2.6709 37 1 7.5785 2.3037 -0.7789 38 1 11.8180 1.0278 -0.1384 39 1 11.0911 -0.4698 -0.7684 40 1 11.7606 0.7359 -1.8935 41 1 10.5832 0.0033 1.2060 42 1 9.1539 -0.1425 3.2031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226443395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:47 Heat of formation + Delta-G solvation = -139.798888 kcal Electronic energy + Delta-G solvation = -30830.413224 eV Core-core repulsion = 26359.315458 eV Total energy + Delta-G solvation = -4471.097766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.24483 -40.08722 -39.79088 -38.45992 -36.52908 -35.87145 -35.44062 -33.29433 -31.63124 -30.96197 -30.66910 -29.43857 -27.45316 -26.44508 -25.12106 -23.53781 -22.83896 -21.50608 -21.39174 -19.92837 -18.81618 -18.10817 -17.76944 -17.31279 -16.74467 -16.57631 -16.22422 -16.00677 -15.79215 -15.66504 -15.40646 -14.79372 -14.33394 -14.05016 -13.86660 -13.75737 -13.15057 -12.96248 -12.73919 -12.45514 -12.31811 -12.04359 -11.97618 -11.75472 -11.49559 -11.29289 -11.10919 -11.07910 -11.00643 -10.83313 -10.60046 -10.53163 -10.18609 -10.15671 -10.14669 -9.84162 -9.60210 -9.38756 -8.83777 -8.42451 -7.78537 -6.30116 -4.55028 0.75488 1.65552 2.17047 2.38958 2.95282 3.13112 3.19618 3.23732 3.25237 3.28439 3.88663 4.01819 4.18614 4.77109 4.98241 4.99509 5.05863 5.08648 5.09509 5.15105 5.35349 5.35957 5.38647 5.46278 5.47267 5.83401 5.87303 5.91136 5.96840 6.06915 6.14347 6.19294 6.22731 6.40608 6.50190 6.76946 6.91149 7.12544 7.26228 7.38225 7.55487 7.69042 8.18589 8.44477 8.60624 8.67330 9.22487 10.69694 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007667 B = 0.005224 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3651.146134 B = 5358.318065 C = 6639.960833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.364 6.364 4 C 0.460 3.540 5 O -0.517 6.517 6 C -0.096 4.096 7 C 0.213 3.787 8 H 0.040 0.960 9 C -0.575 4.575 10 H 0.073 0.927 11 C 0.086 3.914 12 N -0.834 5.834 13 Si 0.894 3.106 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.271 1.271 17 O -0.233 6.233 18 C 0.284 3.716 19 C -0.242 4.242 20 C 0.204 3.796 21 O -0.308 6.308 22 C 0.025 3.975 23 C -0.270 4.270 24 C 0.012 3.988 25 C -0.138 4.138 26 N 0.049 4.951 27 O -0.233 6.233 28 O -0.117 6.117 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.162 0.838 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.139 0.861 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.813 -7.410 -5.510 9.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.282 6.282 4 C 0.304 3.696 5 O -0.404 6.404 6 C -0.133 4.133 7 C 0.160 3.840 8 H 0.058 0.942 9 C -0.611 4.611 10 H 0.091 0.909 11 C -0.125 4.125 12 N -0.467 5.467 13 Si 0.720 3.280 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.195 1.195 17 O -0.139 6.139 18 C 0.228 3.772 19 C -0.262 4.262 20 C 0.157 3.843 21 O -0.220 6.220 22 C -0.070 4.070 23 C -0.290 4.290 24 C -0.007 4.007 25 C -0.224 4.224 26 N 0.562 4.438 27 O -0.430 6.430 28 O -0.345 6.345 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.151 0.849 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.180 0.820 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.157 0.843 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.196 -7.564 -5.845 10.079 hybrid contribution 0.423 0.697 0.278 0.862 sum 3.619 -6.867 -5.567 9.552 Atomic orbital electron populations 1.21777 0.93225 1.02369 1.03356 1.22870 0.94904 0.81597 1.02101 1.86554 1.25888 1.31166 1.84613 1.24719 0.79665 0.94071 0.71115 1.90589 1.60314 1.43638 1.45900 1.21723 0.95971 0.88633 1.07003 1.20124 0.89354 0.93260 0.81273 0.94210 1.21331 1.37308 0.94948 1.07536 0.90871 1.25110 0.93756 0.99201 0.94433 1.70036 1.37666 1.34434 1.04532 0.86546 0.79274 0.84130 0.78033 1.20049 1.20909 1.19547 1.86615 1.25394 1.62712 1.39175 1.18292 0.86798 0.83086 0.89019 1.20555 0.93923 1.10338 1.01384 1.18996 0.89693 0.90533 0.85099 1.86121 1.28652 1.71828 1.35383 1.23115 0.82914 0.97233 1.03757 1.20827 1.02929 1.11070 0.94131 1.20410 0.89411 0.92667 0.98223 1.20372 0.96240 1.17791 0.88001 1.43192 1.01199 0.98022 1.01357 1.94400 1.78579 1.44583 1.25463 1.94654 1.06261 1.44743 1.88795 0.91748 0.90818 0.91480 0.91923 0.91570 0.84886 0.87351 0.91908 0.82040 0.92349 0.92419 0.88156 0.84349 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.26 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.36 -6.63 10.22 -39.26 -0.40 -7.03 16 4 C 0.46 9.54 7.84 36.01 0.28 9.83 16 5 O -0.52 -11.83 15.18 -23.93 -0.36 -12.19 16 6 C -0.10 -2.03 5.27 -27.88 -0.15 -2.18 16 7 C 0.21 4.93 1.35 -27.88 -0.04 4.89 16 8 H 0.04 0.89 6.22 -51.93 -0.32 0.57 16 9 C -0.57 -13.86 7.81 -34.44 -0.27 -14.13 16 10 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 11 C 0.09 2.12 5.22 -17.82 -0.09 2.02 16 12 N -0.83 -21.78 11.20 55.43 0.62 -21.16 16 13 Si 0.89 19.39 29.54 -169.99 -5.02 14.37 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 O -0.23 -5.78 6.07 -47.98 -0.29 -6.07 16 18 C 0.28 6.47 6.56 -39.24 -0.26 6.21 16 19 C -0.24 -4.90 8.61 -39.29 -0.34 -5.24 16 20 C 0.20 3.45 6.68 -39.24 -0.26 3.19 16 21 O -0.31 -4.54 10.49 -19.41 -0.20 -4.74 16 22 C 0.02 0.23 9.81 101.05 0.99 1.22 16 23 C -0.27 -4.05 9.04 -39.41 -0.36 -4.41 16 24 C 0.01 0.21 9.54 -39.63 -0.38 -0.17 16 25 C -0.14 -2.99 6.87 -79.78 -0.55 -3.54 16 26 N 0.05 1.16 4.45 34.04 0.15 1.31 16 27 O -0.23 -5.26 18.44 -29.46 -0.54 -5.81 16 28 O -0.12 -3.05 17.23 -36.50 -0.63 -3.67 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 33 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 34 H 0.13 3.09 6.80 -51.93 -0.35 2.74 16 35 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.16 3.31 5.65 -52.48 -0.30 3.02 16 38 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 39 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.14 1.53 6.29 -52.49 -0.33 1.20 16 42 H 0.15 2.18 7.60 -52.49 -0.40 1.79 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -30.78 366.24 -6.96 -37.75 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.00 Total: 4.17 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.80 Total: -2.44 kcal Atomic # 7 Polarization: -20.62 SS G_CDS: 0.77 Total: -19.85 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -2.43 Total: -39.51 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.78 -6.96 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226443395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.053 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds