Wall clock time and date at job start Tue Mar 31 2020 23:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45192 * 109.47459 * 2 1 4 4 C 1.34229 * 117.00385 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00019 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.46762 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47557 * 54.51077 * 7 6 4 9 9 C 1.50698 * 109.46891 * 174.51318 * 7 6 4 10 10 H 1.08000 * 120.00293 * 243.93919 * 9 7 6 11 11 C 1.37882 * 120.00117 * 63.94503 * 9 7 6 12 12 N 1.31507 * 119.99769 * 6.73694 * 11 9 7 13 13 Si 1.86805 * 119.99900 * 186.73761 * 11 9 7 14 14 H 1.48494 * 109.47115 * 94.97393 * 13 11 9 15 15 H 1.48498 * 109.46959 * 214.97907 * 13 11 9 16 16 H 1.48506 * 109.47010 * 334.97322 * 13 11 9 17 17 O 1.42902 * 109.46912 * 294.50844 * 7 6 4 18 18 C 1.35901 * 116.99995 * 156.51451 * 17 7 6 19 19 C 1.38649 * 120.02909 * 5.66182 * 18 17 7 20 20 C 1.38616 * 119.89348 * 179.97438 * 19 18 17 21 21 O 1.35896 * 120.02648 * 180.02562 * 20 19 18 22 22 C 1.42902 * 116.99776 * 179.97438 * 21 20 19 23 23 C 1.38787 * 119.94326 * 0.02562 * 20 19 18 24 24 C 1.38162 * 120.05579 * 359.97438 * 23 20 19 25 25 C 1.38190 * 120.10571 * 359.97438 * 24 23 20 26 26 N 1.48009 * 119.97109 * 179.97438 * 25 24 23 27 27 O 1.21799 * 119.99758 * 0.02562 * 26 25 24 28 28 O 1.21799 * 120.00118 * 180.02562 * 26 25 24 29 29 H 1.09005 * 109.47383 * 59.99983 * 1 2 3 30 30 H 1.08997 * 109.47419 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47113 * 300.00090 * 1 2 3 32 32 H 1.09005 * 109.46993 * 240.00224 * 2 1 3 33 33 H 1.08993 * 109.46879 * 120.00507 * 2 1 3 34 34 H 1.08996 * 109.47029 * 60.00146 * 6 4 3 35 35 H 1.08996 * 109.46826 * 299.99727 * 6 4 3 36 36 H 0.96998 * 119.99715 * 180.02562 * 12 11 9 37 37 H 1.08003 * 120.05199 * 0.25775 * 19 18 17 38 38 H 1.08990 * 109.47221 * 299.99971 * 22 21 20 39 39 H 1.09006 * 109.46972 * 60.00474 * 22 21 20 40 40 H 1.09004 * 109.47007 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.97265 * 180.02562 * 23 20 19 42 42 H 1.08001 * 119.94500 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9374 0.0012 7 6 5.4486 2.8572 0.0010 8 1 5.7802 2.2428 -0.8360 9 6 6.0243 4.2433 -0.1342 10 1 6.6061 4.5038 -1.0060 11 6 5.8084 5.1791 0.8552 12 7 5.2155 4.8271 1.9750 13 14 6.3581 6.9468 0.6049 14 1 5.2212 7.7502 0.0883 15 1 6.8150 7.5112 1.9002 16 1 7.4753 6.9840 -0.3728 17 8 5.8950 2.2735 1.2267 18 6 7.1184 1.6818 1.2186 19 6 7.9221 1.7651 0.0919 20 6 9.1697 1.1609 0.0870 21 8 9.9598 1.2413 -1.0158 22 6 11.2329 0.5956 -0.9500 23 6 9.6111 0.4739 1.2091 24 6 8.8084 0.3923 2.3307 25 6 7.5648 0.9947 2.3384 26 7 6.7071 0.9049 3.5413 27 8 7.0978 0.3006 4.5240 28 8 5.6106 1.4352 3.5485 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8932 -0.5139 0.8899 34 1 3.5845 3.4692 0.8912 35 1 3.5852 3.4697 -0.8888 36 1 5.0633 5.4854 2.6709 37 1 7.5785 2.3037 -0.7789 38 1 11.8180 1.0278 -0.1384 39 1 11.0911 -0.4698 -0.7684 40 1 11.7606 0.7359 -1.8935 41 1 10.5832 0.0033 1.2060 42 1 9.1539 -0.1425 3.2031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226443395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:46 Heat of formation + Delta-G solvation = -156.632870 kcal Electronic energy + Delta-G solvation = -30831.143200 eV Core-core repulsion = 26359.315458 eV Total energy + Delta-G solvation = -4471.827742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.97181 -41.62384 -41.27355 -39.94430 -37.98866 -37.46259 -37.20862 -35.09966 -33.00134 -32.41118 -32.16011 -30.95173 -28.44056 -28.22758 -26.67015 -25.13204 -24.13683 -23.03313 -22.87584 -21.57009 -20.40212 -19.66656 -19.43626 -18.94032 -18.35976 -18.31165 -17.74412 -17.45748 -17.24179 -16.99687 -16.78021 -16.49818 -15.74822 -15.50788 -15.39224 -15.20505 -14.41827 -14.31293 -14.17217 -13.71939 -13.64321 -13.40222 -13.27004 -13.14815 -12.97194 -12.82312 -12.65961 -12.49713 -12.44063 -12.41459 -12.12986 -12.08499 -11.99794 -11.96698 -11.56493 -11.51592 -11.35330 -11.09681 -10.72393 -9.81146 -9.35537 -8.17637 -6.47878 -0.87606 0.21495 0.53778 0.74201 1.27969 1.40568 1.44377 1.52969 1.80100 2.06945 2.35461 2.42074 2.45161 3.14258 3.47152 3.74756 3.86435 3.94105 3.98992 4.03683 4.11383 4.30789 4.32569 4.36246 4.42771 4.43045 4.48808 4.62928 4.73821 4.79737 4.86654 4.87992 4.91987 5.03344 5.11882 5.21464 5.32151 5.49861 5.54975 5.63997 5.85301 6.17642 6.42244 6.75914 6.84180 6.86128 7.32299 8.81186 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007667 B = 0.005224 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3651.146134 B = 5358.318065 C = 6639.960833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.365 6.365 4 C 0.465 3.535 5 O -0.542 6.542 6 C -0.092 4.092 7 C 0.212 3.788 8 H 0.037 0.963 9 C -0.578 4.578 10 H 0.073 0.927 11 C 0.046 3.954 12 N -0.866 5.866 13 Si 0.952 3.048 14 H -0.265 1.265 15 H -0.292 1.292 16 H -0.267 1.267 17 O -0.258 6.258 18 C 0.251 3.749 19 C -0.266 4.266 20 C 0.222 3.778 21 O -0.319 6.319 22 C 0.008 3.992 23 C -0.242 4.242 24 C 0.019 3.981 25 C -0.166 4.166 26 N 0.053 4.947 27 O -0.194 6.194 28 O -0.207 6.207 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.111 0.889 35 H 0.130 0.870 36 H 0.266 0.734 37 H 0.148 0.852 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.194 0.806 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -8.743 -6.617 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.310 3.690 5 O -0.432 6.432 6 C -0.130 4.130 7 C 0.159 3.841 8 H 0.055 0.945 9 C -0.614 4.614 10 H 0.092 0.908 11 C -0.161 4.161 12 N -0.500 5.500 13 Si 0.777 3.223 14 H -0.190 1.190 15 H -0.218 1.218 16 H -0.191 1.191 17 O -0.165 6.165 18 C 0.196 3.804 19 C -0.286 4.286 20 C 0.174 3.826 21 O -0.231 6.231 22 C -0.086 4.086 23 C -0.261 4.261 24 C 0.000 4.000 25 C -0.254 4.254 26 N 0.559 4.441 27 O -0.404 6.404 28 O -0.412 6.412 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.148 0.852 36 H 0.075 0.925 37 H 0.166 0.834 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.144 0.856 41 H 0.211 0.789 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.639 -8.807 -7.036 12.604 hybrid contribution -0.067 0.870 0.534 1.023 sum 5.572 -7.937 -6.502 11.675 Atomic orbital electron populations 1.21805 0.89783 1.04460 1.03763 1.23270 0.97562 0.79683 1.01917 1.86533 1.24196 1.33520 1.83960 1.24509 0.80432 0.93468 0.70548 1.90564 1.61133 1.44279 1.47215 1.21613 0.95379 0.89160 1.06848 1.20114 0.90139 0.92722 0.81160 0.94525 1.21514 1.37004 0.95590 1.07295 0.90846 1.25750 0.93890 1.02412 0.94094 1.70197 1.39356 1.35130 1.05271 0.85648 0.79141 0.80185 0.77359 1.18985 1.21824 1.19090 1.86577 1.26829 1.63774 1.39342 1.18715 0.86842 0.84284 0.90523 1.20482 0.95718 1.12070 1.00372 1.19037 0.88621 0.88699 0.86292 1.86139 1.30542 1.72042 1.34334 1.23634 0.80516 0.98244 1.06166 1.21356 1.04142 1.08770 0.91873 1.20891 0.87483 0.91548 1.00077 1.20786 0.97627 1.20014 0.86934 1.43523 1.01158 0.97377 1.02004 1.94314 1.77821 1.42458 1.25850 1.94678 1.08222 1.48489 1.89848 0.90748 0.87826 0.91640 0.91211 0.92758 0.87138 0.85201 0.92458 0.83436 0.90511 0.90290 0.85646 0.78931 0.80327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 10.29 71.98 0.74 -2.17 16 2 C 0.05 1.47 6.19 71.98 0.45 1.92 16 3 O -0.36 -13.73 10.22 -51.41 -0.53 -14.25 16 4 C 0.47 20.35 7.84 71.24 0.56 20.91 16 5 O -0.54 -26.17 15.18 26.93 0.41 -25.76 16 6 C -0.09 -4.16 5.27 29.85 0.16 -4.01 16 7 C 0.21 10.38 1.35 29.85 0.04 10.42 16 8 H 0.04 1.75 6.22 -2.39 -0.01 1.74 16 9 C -0.58 -28.94 7.81 25.60 0.20 -28.74 16 10 H 0.07 3.56 7.82 -2.91 -0.02 3.54 16 11 C 0.05 2.33 5.22 84.66 0.44 2.77 16 12 N -0.87 -47.73 11.20 21.45 0.24 -47.49 16 13 Si 0.95 40.68 29.54 68.60 2.03 42.70 16 14 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 15 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 O -0.26 -13.62 6.07 -65.14 -0.40 -14.02 16 18 C 0.25 11.88 6.56 22.49 0.15 12.02 16 19 C -0.27 -10.93 8.61 22.46 0.19 -10.74 16 20 C 0.22 6.99 6.68 22.49 0.15 7.14 16 21 O -0.32 -8.34 10.49 -92.38 -0.97 -9.31 16 22 C 0.01 0.11 9.81 113.37 1.11 1.22 16 23 C -0.24 -6.22 9.04 22.38 0.20 -6.01 16 24 C 0.02 0.60 9.54 22.24 0.21 0.81 16 25 C -0.17 -7.29 6.87 36.49 0.25 -7.04 16 26 N 0.05 2.60 4.45 -46.20 -0.21 2.40 16 27 O -0.19 -8.66 18.44 18.89 0.35 -8.31 16 28 O -0.21 -11.57 17.23 25.62 0.44 -11.13 16 29 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.98 8.13 -2.38 -0.02 1.96 16 33 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 34 H 0.11 5.53 6.80 -2.39 -0.02 5.52 16 35 H 0.13 5.06 8.14 -2.39 -0.02 5.04 16 36 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 37 H 0.15 6.33 5.65 -2.91 -0.02 6.31 16 38 H 0.08 0.82 7.66 -2.39 -0.02 0.80 16 39 H 0.08 0.79 7.66 -2.38 -0.02 0.77 16 40 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.19 2.86 6.29 -2.91 -0.02 2.84 16 42 H 0.18 4.50 7.60 -2.91 -0.02 4.47 16 Total: -1.00 -73.00 366.24 7.29 -65.71 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 1.07 Total: 20.95 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 4.85 Total: -1.49 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.03 Total: -45.09 kcal Atomic # 8 Polarization: -82.09 SS G_CDS: -0.69 Total: -82.78 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.70 kcal Total: -73.00 7.29 -65.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226443395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.927 kcal (2) G-P(sol) polarization free energy of solvation -72.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds