Wall clock time and date at job start Tue Mar 31 2020 23:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.47153 * 2 1 4 4 C 1.34226 * 117.00341 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99805 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00299 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46947 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.46694 * 54.44456 * 7 6 4 9 9 C 1.50704 * 109.46812 * 174.43345 * 7 6 4 10 10 H 1.08001 * 119.99995 * 245.38032 * 9 7 6 11 11 C 1.37877 * 119.99661 * 65.37984 * 9 7 6 12 12 N 1.31509 * 120.00430 * 355.12126 * 11 9 7 13 13 Si 1.86801 * 119.99915 * 175.12744 * 11 9 7 14 14 H 1.48500 * 109.47380 * 94.99392 * 13 11 9 15 15 H 1.48496 * 109.47306 * 214.99700 * 13 11 9 16 16 H 1.48498 * 109.46970 * 334.99776 * 13 11 9 17 17 O 1.42892 * 109.47381 * 294.43324 * 7 6 4 18 18 C 1.36000 * 116.99532 * 155.28608 * 17 7 6 19 19 C 1.38556 * 120.07685 * 5.50130 * 18 17 7 20 20 C 1.38237 * 120.00215 * 179.97438 * 19 18 17 21 21 C 1.38260 * 120.14794 * 359.97438 * 20 19 18 22 22 N 1.48003 * 119.92820 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00271 * 0.02562 * 22 21 20 24 24 O 1.21797 * 119.99986 * 179.97438 * 22 21 20 25 25 C 1.38239 * 120.14243 * 0.02562 * 21 20 19 26 26 C 1.38572 * 120.00121 * 359.72547 * 25 21 20 27 27 O 1.35989 * 120.07266 * 180.27643 * 26 25 21 28 28 C 1.42903 * 117.00361 * 0.25067 * 27 26 25 29 29 H 1.09008 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47595 * 300.00142 * 1 2 3 31 31 H 1.09002 * 109.47156 * 60.00363 * 1 2 3 32 32 H 1.08998 * 109.46956 * 239.99457 * 2 1 3 33 33 H 1.08998 * 109.46675 * 119.99561 * 2 1 3 34 34 H 1.08997 * 109.47354 * 300.00001 * 6 4 3 35 35 H 1.08998 * 109.46796 * 60.00184 * 6 4 3 36 36 H 0.96997 * 120.00454 * 179.97438 * 12 11 9 37 37 H 1.08006 * 120.00254 * 0.02765 * 19 18 17 38 38 H 1.08002 * 119.93036 * 180.02562 * 20 19 18 39 39 H 1.07996 * 119.99885 * 180.02562 * 25 21 20 40 40 H 1.08992 * 109.47294 * 180.02562 * 28 27 26 41 41 H 1.08998 * 109.46926 * 300.00651 * 28 27 26 42 42 H 1.09003 * 109.46951 * 60.00211 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0014 8 1 5.7808 2.2409 -0.8339 9 6 6.0244 4.2431 -0.1370 10 1 6.5872 4.5084 -1.0197 11 6 5.8325 5.1723 0.8635 12 7 5.0678 4.8817 1.8931 13 14 6.6588 6.8442 0.7562 14 1 5.7189 7.8232 0.1534 15 1 7.0386 7.2970 2.1185 16 1 7.8758 6.7416 -0.0886 17 8 5.8940 2.2768 1.2288 18 6 7.1072 1.6622 1.2165 19 6 7.9019 1.7170 0.0829 20 6 9.1350 1.0922 0.0723 21 6 9.5785 0.4122 1.1915 22 7 10.8998 -0.2545 1.1750 23 8 11.5953 -0.2034 0.1765 24 8 11.2919 -0.8535 2.1603 25 6 8.7905 0.3537 2.3258 26 6 7.5557 0.9822 2.3448 27 8 6.7818 0.9304 3.4618 28 6 7.3064 0.2149 4.5820 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5852 3.4691 -0.8904 35 1 3.5843 3.4700 0.8895 36 1 4.9332 5.5353 2.5971 37 1 7.5585 2.2486 -0.7923 38 1 9.7537 1.1360 -0.8118 39 1 9.1394 -0.1777 3.1988 40 1 6.5910 0.2508 5.4035 41 1 7.4833 -0.8230 4.2997 42 1 8.2451 0.6707 4.8970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227185303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:58 Heat of formation + Delta-G solvation = -141.105138 kcal Electronic energy + Delta-G solvation = -30250.607100 eV Core-core repulsion = 25779.452691 eV Total energy + Delta-G solvation = -4471.154409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76487 -40.24657 -39.83272 -38.09100 -36.73724 -36.16007 -36.00010 -33.48367 -31.72354 -30.95897 -30.42827 -29.79636 -27.43404 -26.53281 -25.49516 -23.50954 -22.79517 -21.94870 -21.43205 -20.02016 -19.20934 -18.33588 -18.02460 -17.28303 -17.14373 -16.54169 -16.40864 -16.19463 -15.84639 -15.68013 -15.52426 -14.95719 -14.47039 -14.04225 -13.97084 -13.78404 -13.06805 -12.92990 -12.81775 -12.52094 -12.37074 -12.05310 -11.75416 -11.68970 -11.52646 -11.37883 -11.34794 -11.18119 -11.14596 -11.06164 -10.97525 -10.81299 -10.75826 -10.63181 -10.25964 -9.91191 -9.72255 -9.55118 -8.92788 -8.66479 -7.52286 -6.44658 -4.66690 0.36240 1.41555 1.87914 1.92911 2.84938 3.05936 3.15984 3.17978 3.21136 3.44596 3.80108 3.93219 4.09901 4.83083 4.87391 4.99128 5.00101 5.05845 5.11974 5.27436 5.28127 5.30637 5.35065 5.37117 5.59212 5.69031 5.79052 5.81442 5.87177 5.98143 6.04262 6.11653 6.18676 6.31931 6.46800 6.67197 6.82083 6.87019 7.06421 7.38017 7.47782 7.59479 8.07888 8.13807 8.34543 8.51588 9.12171 10.56957 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008250 B = 0.004527 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.940842 B = 6183.006304 C = 8037.806022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.457 3.543 5 O -0.517 6.517 6 C -0.099 4.099 7 C 0.216 3.784 8 H 0.040 0.960 9 C -0.572 4.572 10 H 0.074 0.926 11 C 0.088 3.912 12 N -0.849 5.849 13 Si 0.896 3.104 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.269 1.269 17 O -0.254 6.254 18 C 0.223 3.777 19 C -0.183 4.183 20 C -0.037 4.037 21 C -0.084 4.084 22 N 0.049 4.951 23 O -0.183 6.183 24 O -0.191 6.191 25 C -0.122 4.122 26 C 0.079 3.921 27 O -0.289 6.289 28 C 0.023 3.977 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.271 0.729 37 H 0.164 0.836 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -6.196 -0.087 7.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.301 3.699 5 O -0.405 6.405 6 C -0.137 4.137 7 C 0.162 3.838 8 H 0.058 0.942 9 C -0.608 4.608 10 H 0.092 0.908 11 C -0.121 4.121 12 N -0.483 5.483 13 Si 0.722 3.278 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.193 1.193 17 O -0.163 6.163 18 C 0.170 3.830 19 C -0.203 4.203 20 C -0.057 4.057 21 C -0.169 4.169 22 N 0.560 4.440 23 O -0.396 6.396 24 O -0.402 6.402 25 C -0.142 4.142 26 C 0.033 3.967 27 O -0.202 6.202 28 C -0.072 4.072 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.181 0.819 38 H 0.165 0.835 39 H 0.169 0.831 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.829 -6.018 0.306 7.722 hybrid contribution 1.036 0.458 0.092 1.137 sum -3.793 -5.560 0.398 6.742 Atomic orbital electron populations 1.21783 0.93200 1.02412 1.03370 1.22875 0.94930 0.81585 1.02099 1.86566 1.25940 1.31170 1.84598 1.24843 0.79657 0.94195 0.71170 1.90596 1.60275 1.43651 1.45928 1.21829 0.96039 0.88401 1.07386 1.20050 0.89301 0.93212 0.81197 0.94232 1.21383 1.37654 0.95361 1.06429 0.90778 1.25053 0.93585 0.98869 0.94617 1.69870 1.33943 1.35342 1.09114 0.86503 0.80154 0.83091 0.78026 1.20095 1.20743 1.19326 1.86429 1.27419 1.63195 1.39209 1.18739 0.87464 0.86600 0.90163 1.21224 0.94171 1.04927 0.99986 1.20703 0.95766 0.92768 0.96456 1.20352 0.86403 1.10833 0.99283 1.43515 1.02497 0.98365 0.99574 1.94476 1.54777 1.66330 1.23967 1.94460 1.76892 1.42959 1.25841 1.20515 0.93120 1.02091 0.98519 1.18004 0.90621 1.00224 0.87889 1.86319 1.42552 1.71275 1.20033 1.23088 1.00555 0.95716 0.87845 0.90773 0.91561 0.91669 0.91818 0.91677 0.87393 0.84415 0.91914 0.81867 0.83498 0.83101 0.88119 0.92884 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.29 37.16 0.38 -1.12 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.36 -6.24 10.22 -39.25 -0.40 -6.64 16 4 C 0.46 8.91 7.84 36.01 0.28 9.20 16 5 O -0.52 -11.11 15.18 -23.91 -0.36 -11.48 16 6 C -0.10 -1.99 5.28 -27.88 -0.15 -2.14 16 7 C 0.22 4.70 1.34 -27.88 -0.04 4.66 16 8 H 0.04 0.82 6.13 -51.93 -0.32 0.51 16 9 C -0.57 -13.12 7.95 -34.44 -0.27 -13.40 16 10 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16 11 C 0.09 2.09 5.26 -17.82 -0.09 2.00 16 12 N -0.85 -20.98 11.04 55.43 0.61 -20.36 16 13 Si 0.90 18.79 29.54 -169.99 -5.02 13.77 16 14 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 17 O -0.25 -5.90 8.06 -44.64 -0.36 -6.26 16 18 C 0.22 4.70 6.61 -39.12 -0.26 4.44 16 19 C -0.18 -3.43 8.70 -39.46 -0.34 -3.77 16 20 C -0.04 -0.64 9.55 -39.57 -0.38 -1.02 16 21 C -0.08 -1.50 6.85 -79.95 -0.55 -2.05 16 22 N 0.05 0.90 4.45 33.96 0.15 1.05 16 23 O -0.18 -3.38 18.44 -29.46 -0.54 -3.92 16 24 O -0.19 -3.51 18.44 -29.46 -0.54 -4.06 16 25 C -0.12 -2.12 8.54 -39.46 -0.34 -2.46 16 26 C 0.08 1.54 6.70 -39.12 -0.26 1.27 16 27 O -0.29 -5.46 10.28 -34.21 -0.35 -5.81 16 28 C 0.02 0.30 9.81 101.05 0.99 1.30 16 29 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 33 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 35 H 0.14 3.05 6.47 -51.93 -0.34 2.72 16 36 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 37 H 0.16 2.94 5.68 -52.48 -0.30 2.64 16 38 H 0.15 2.18 7.60 -52.49 -0.40 1.78 16 39 H 0.15 2.27 5.85 -52.49 -0.31 1.97 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 42 H 0.05 0.64 7.67 -51.93 -0.40 0.24 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -28.30 368.04 -7.02 -35.32 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.96 Total: 4.91 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -0.79 Total: -2.05 kcal Atomic # 7 Polarization: -20.08 SS G_CDS: 0.76 Total: -19.31 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -2.56 Total: -38.17 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.30 -7.02 -35.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227185303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.785 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds