Wall clock time and date at job start Tue Mar 31 2020 23:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.47153 * 2 1 4 4 C 1.34226 * 117.00341 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99805 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00299 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46947 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.46694 * 54.44456 * 7 6 4 9 9 C 1.50704 * 109.46812 * 174.43345 * 7 6 4 10 10 H 1.08001 * 119.99995 * 245.38032 * 9 7 6 11 11 C 1.37877 * 119.99661 * 65.37984 * 9 7 6 12 12 N 1.31509 * 120.00430 * 355.12126 * 11 9 7 13 13 Si 1.86801 * 119.99915 * 175.12744 * 11 9 7 14 14 H 1.48500 * 109.47380 * 94.99392 * 13 11 9 15 15 H 1.48496 * 109.47306 * 214.99700 * 13 11 9 16 16 H 1.48498 * 109.46970 * 334.99776 * 13 11 9 17 17 O 1.42892 * 109.47381 * 294.43324 * 7 6 4 18 18 C 1.36000 * 116.99532 * 155.28608 * 17 7 6 19 19 C 1.38556 * 120.07685 * 5.50130 * 18 17 7 20 20 C 1.38237 * 120.00215 * 179.97438 * 19 18 17 21 21 C 1.38260 * 120.14794 * 359.97438 * 20 19 18 22 22 N 1.48003 * 119.92820 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00271 * 0.02562 * 22 21 20 24 24 O 1.21797 * 119.99986 * 179.97438 * 22 21 20 25 25 C 1.38239 * 120.14243 * 0.02562 * 21 20 19 26 26 C 1.38572 * 120.00121 * 359.72547 * 25 21 20 27 27 O 1.35989 * 120.07266 * 180.27643 * 26 25 21 28 28 C 1.42903 * 117.00361 * 0.25067 * 27 26 25 29 29 H 1.09008 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47595 * 300.00142 * 1 2 3 31 31 H 1.09002 * 109.47156 * 60.00363 * 1 2 3 32 32 H 1.08998 * 109.46956 * 239.99457 * 2 1 3 33 33 H 1.08998 * 109.46675 * 119.99561 * 2 1 3 34 34 H 1.08997 * 109.47354 * 300.00001 * 6 4 3 35 35 H 1.08998 * 109.46796 * 60.00184 * 6 4 3 36 36 H 0.96997 * 120.00454 * 179.97438 * 12 11 9 37 37 H 1.08006 * 120.00254 * 0.02765 * 19 18 17 38 38 H 1.08002 * 119.93036 * 180.02562 * 20 19 18 39 39 H 1.07996 * 119.99885 * 180.02562 * 25 21 20 40 40 H 1.08992 * 109.47294 * 180.02562 * 28 27 26 41 41 H 1.08998 * 109.46926 * 300.00651 * 28 27 26 42 42 H 1.09003 * 109.46951 * 60.00211 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0014 8 1 5.7808 2.2409 -0.8339 9 6 6.0244 4.2431 -0.1370 10 1 6.5872 4.5084 -1.0197 11 6 5.8325 5.1723 0.8635 12 7 5.0678 4.8817 1.8931 13 14 6.6588 6.8442 0.7562 14 1 5.7189 7.8232 0.1534 15 1 7.0386 7.2970 2.1185 16 1 7.8758 6.7416 -0.0886 17 8 5.8940 2.2768 1.2288 18 6 7.1072 1.6622 1.2165 19 6 7.9019 1.7170 0.0829 20 6 9.1350 1.0922 0.0723 21 6 9.5785 0.4122 1.1915 22 7 10.8998 -0.2545 1.1750 23 8 11.5953 -0.2034 0.1765 24 8 11.2919 -0.8535 2.1603 25 6 8.7905 0.3537 2.3258 26 6 7.5557 0.9822 2.3448 27 8 6.7818 0.9304 3.4618 28 6 7.3064 0.2149 4.5820 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5852 3.4691 -0.8904 35 1 3.5843 3.4700 0.8895 36 1 4.9332 5.5353 2.5971 37 1 7.5585 2.2486 -0.7923 38 1 9.7537 1.1360 -0.8118 39 1 9.1394 -0.1777 3.1988 40 1 6.5910 0.2508 5.4035 41 1 7.4833 -0.8230 4.2997 42 1 8.2451 0.6707 4.8970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227185303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:57 Heat of formation + Delta-G solvation = -154.280857 kcal Electronic energy + Delta-G solvation = -30251.178442 eV Core-core repulsion = 25779.452691 eV Total energy + Delta-G solvation = -4471.725751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.21803 -41.72050 -41.28290 -39.55631 -38.16947 -37.61640 -37.46597 -35.19109 -33.00155 -32.34842 -31.87845 -31.23680 -28.63862 -28.17405 -26.92293 -24.96217 -24.03137 -23.35727 -22.86759 -21.53445 -20.62380 -19.79890 -19.62755 -18.80937 -18.59886 -18.02397 -17.82064 -17.55854 -17.31831 -17.23121 -16.82872 -16.52697 -15.95612 -15.44097 -15.33075 -15.16472 -14.36778 -14.28661 -14.14961 -13.88467 -13.66139 -13.39838 -13.19478 -13.07607 -12.88010 -12.81084 -12.71223 -12.61367 -12.54536 -12.46623 -12.33537 -12.26814 -12.26425 -12.14717 -11.52810 -11.49406 -11.36392 -11.19797 -10.69778 -10.08636 -9.03408 -8.22100 -6.47846 -1.08931 0.00387 0.42358 0.46328 1.30431 1.40550 1.46684 1.53350 1.82587 2.19601 2.32964 2.37576 2.42897 3.13507 3.45359 3.64832 3.79449 3.88381 3.94701 4.00434 4.12284 4.14680 4.31412 4.33462 4.35012 4.44212 4.47669 4.52782 4.64322 4.73280 4.80909 4.88721 4.92540 4.98137 5.13350 5.18322 5.32428 5.43501 5.52931 5.65296 5.86770 6.10587 6.48247 6.62398 6.80657 6.87506 7.33069 8.78636 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008250 B = 0.004527 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.940842 B = 6183.006304 C = 8037.806022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.366 6.366 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.096 4.096 7 C 0.214 3.786 8 H 0.042 0.958 9 C -0.575 4.575 10 H 0.077 0.923 11 C 0.051 3.949 12 N -0.875 5.875 13 Si 0.946 3.054 14 H -0.268 1.268 15 H -0.291 1.291 16 H -0.268 1.268 17 O -0.279 6.279 18 C 0.187 3.813 19 C -0.183 4.183 20 C -0.031 4.031 21 C -0.087 4.087 22 N 0.048 4.952 23 O -0.184 6.184 24 O -0.189 6.189 25 C -0.112 4.112 26 C 0.071 3.929 27 O -0.319 6.319 28 C 0.013 3.987 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.268 0.732 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.175 0.825 40 H 0.121 0.879 41 H 0.069 0.931 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -6.881 -0.335 7.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.284 6.284 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.133 4.133 7 C 0.161 3.839 8 H 0.060 0.940 9 C -0.612 4.612 10 H 0.095 0.905 11 C -0.155 4.155 12 N -0.510 5.510 13 Si 0.772 3.228 14 H -0.193 1.193 15 H -0.217 1.217 16 H -0.192 1.192 17 O -0.189 6.189 18 C 0.136 3.864 19 C -0.203 4.203 20 C -0.050 4.050 21 C -0.172 4.172 22 N 0.560 4.440 23 O -0.396 6.396 24 O -0.400 6.400 25 C -0.132 4.132 26 C 0.024 3.976 27 O -0.233 6.233 28 C -0.081 4.081 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.077 0.923 37 H 0.183 0.817 38 H 0.189 0.811 39 H 0.192 0.808 40 H 0.139 0.861 41 H 0.088 0.912 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.575 -6.708 0.048 8.120 hybrid contribution 0.978 0.532 0.205 1.132 sum -3.596 -6.176 0.253 7.151 Atomic orbital electron populations 1.21810 0.90033 1.04392 1.03705 1.23261 0.97387 0.79711 1.02045 1.86544 1.24367 1.33477 1.83970 1.24595 0.80372 0.93552 0.70648 1.90577 1.61032 1.44228 1.47163 1.21695 0.95474 0.88961 1.07175 1.20050 0.90033 0.92641 0.81208 0.93990 1.21610 1.37270 0.96014 1.06287 0.90509 1.25618 0.94069 1.01310 0.94528 1.69987 1.35292 1.36006 1.09727 0.85722 0.79443 0.80350 0.77295 1.19302 1.21705 1.19218 1.86379 1.28684 1.64282 1.39523 1.19198 0.87493 0.87958 0.91783 1.21268 0.94494 1.05029 0.99476 1.20894 0.95236 0.91737 0.97147 1.20527 0.86299 1.10653 0.99685 1.43546 1.02535 0.98376 0.99590 1.94478 1.54805 1.66355 1.23967 1.94458 1.76884 1.42864 1.25803 1.20677 0.92133 1.01286 0.99136 1.18119 0.91212 1.00305 0.87936 1.86280 1.43711 1.72301 1.21037 1.23449 1.01785 0.96190 0.86707 0.87924 0.91578 0.90965 0.91352 0.92352 0.85644 0.86477 0.92283 0.81683 0.81096 0.80826 0.86061 0.91246 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 10.29 71.98 0.74 -1.83 16 2 C 0.05 1.31 6.19 71.98 0.45 1.76 16 3 O -0.37 -12.48 10.22 -51.37 -0.53 -13.00 16 4 C 0.46 18.32 7.84 71.24 0.56 18.88 16 5 O -0.54 -23.62 15.18 26.91 0.41 -23.21 16 6 C -0.10 -3.92 5.28 29.85 0.16 -3.77 16 7 C 0.21 9.50 1.34 29.85 0.04 9.54 16 8 H 0.04 1.79 6.13 -2.39 -0.01 1.77 16 9 C -0.58 -26.59 7.95 25.60 0.20 -26.39 16 10 H 0.08 3.41 7.82 -2.91 -0.02 3.39 16 11 C 0.05 2.44 5.26 84.66 0.44 2.88 16 12 N -0.88 -44.20 11.04 21.45 0.24 -43.96 16 13 Si 0.95 38.61 29.54 68.60 2.03 40.64 16 14 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 15 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 16 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 17 O -0.28 -13.29 8.06 -69.75 -0.56 -13.85 16 18 C 0.19 7.98 6.61 22.57 0.15 8.13 16 19 C -0.18 -6.82 8.70 22.35 0.19 -6.62 16 20 C -0.03 -1.01 9.55 22.27 0.21 -0.80 16 21 C -0.09 -2.96 6.85 36.38 0.25 -2.71 16 22 N 0.05 1.65 4.45 -46.46 -0.21 1.44 16 23 O -0.18 -6.38 18.44 18.89 0.35 -6.04 16 24 O -0.19 -6.51 18.44 18.89 0.35 -6.16 16 25 C -0.11 -3.74 8.54 22.35 0.19 -3.55 16 26 C 0.07 2.74 6.70 22.57 0.15 2.89 16 27 O -0.32 -12.08 10.28 -79.56 -0.82 -12.90 16 28 C 0.01 0.31 9.81 113.37 1.11 1.43 16 29 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 33 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 34 H 0.13 4.54 8.14 -2.39 -0.02 4.52 16 35 H 0.12 5.37 6.47 -2.39 -0.02 5.36 16 36 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 37 H 0.17 5.96 5.68 -2.91 -0.02 5.95 16 38 H 0.17 4.70 7.60 -2.91 -0.02 4.68 16 39 H 0.17 4.84 5.85 -2.91 -0.02 4.82 16 40 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.07 1.46 7.65 -2.39 -0.02 1.45 16 42 H 0.07 1.46 7.67 -2.39 -0.02 1.44 16 Total: -1.00 -60.68 368.04 7.18 -53.51 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 1.07 Total: 23.70 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 4.85 Total: -0.16 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.03 Total: -42.52 kcal Atomic # 8 Polarization: -74.36 SS G_CDS: -0.80 Total: -75.16 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -60.68 7.18 -53.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227185303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.774 kcal (2) G-P(sol) polarization free energy of solvation -60.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds