Wall clock time and date at job start Tue Mar 31 2020 23:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45200 * 109.47084 * 2 1 4 4 C 1.34232 * 117.00123 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99760 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99836 * 179.97438 * 4 3 2 7 7 C 1.53005 * 109.46948 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47290 * 54.99662 * 7 6 4 9 9 C 1.50695 * 109.47304 * 174.99871 * 7 6 4 10 10 H 1.07998 * 120.00196 * 234.26297 * 9 7 6 11 11 C 1.37879 * 119.99646 * 54.26373 * 9 7 6 12 12 N 1.31515 * 120.00444 * 359.97438 * 11 9 7 13 13 Si 1.86806 * 119.99569 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47318 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47020 * 120.00042 * 13 11 9 16 16 H 1.48501 * 109.46858 * 239.99737 * 13 11 9 17 17 O 1.42904 * 109.47174 * 295.00042 * 7 6 4 18 18 C 1.35989 * 117.00014 * 157.63004 * 17 7 6 19 19 C 1.39202 * 120.07120 * 287.32808 * 18 17 7 20 20 O 1.35991 * 120.07293 * 359.95849 * 19 18 17 21 21 C 1.42899 * 116.99836 * 180.02562 * 20 19 18 22 22 C 1.38523 * 119.84942 * 179.97438 * 19 18 17 23 23 C 1.38287 * 120.00029 * 0.02562 * 22 19 18 24 24 C 1.38205 * 120.14774 * 359.97438 * 23 22 19 25 25 C 1.38288 * 120.14631 * 359.97438 * 24 23 22 26 26 N 1.48015 * 119.99953 * 180.02562 * 25 24 23 27 27 O 1.21807 * 119.99887 * 7.57411 * 26 25 24 28 28 O 1.21795 * 120.00193 * 187.57258 * 26 25 24 29 29 H 1.08996 * 109.47680 * 59.99839 * 1 2 3 30 30 H 1.09003 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47004 * 299.99778 * 1 2 3 32 32 H 1.08997 * 109.47099 * 239.99867 * 2 1 3 33 33 H 1.08999 * 109.47143 * 119.99649 * 2 1 3 34 34 H 1.08994 * 109.47248 * 60.00152 * 6 4 3 35 35 H 1.09000 * 109.47105 * 299.99748 * 6 4 3 36 36 H 0.96998 * 120.00022 * 180.02562 * 12 11 9 37 37 H 1.08991 * 109.47277 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.47508 * 300.00464 * 21 20 19 39 39 H 1.09005 * 109.46593 * 60.00428 * 21 20 19 40 40 H 1.08002 * 120.00039 * 180.27543 * 22 19 18 41 41 H 1.07999 * 119.92096 * 180.02562 * 23 22 19 42 42 H 1.08002 * 119.92491 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9374 -0.0012 7 6 5.4486 2.8574 -0.0010 8 1 5.7806 2.2493 -0.8425 9 6 6.0243 4.2445 -0.1255 10 1 6.7320 4.4670 -0.9104 11 6 5.6475 5.2295 0.7627 12 7 4.7853 4.9587 1.7182 13 14 6.3617 6.9487 0.6088 14 1 7.3012 6.9934 -0.5403 15 1 5.2631 7.9231 0.3875 16 1 7.0879 7.2965 1.8566 17 8 5.8944 2.2644 1.2203 18 6 7.1284 1.6930 1.2148 19 6 7.3359 0.4876 0.5503 20 8 6.3049 -0.1216 -0.0941 21 6 6.5912 -1.3563 -0.7540 22 6 8.5949 -0.0901 0.5471 23 6 9.6420 0.5303 1.2036 24 6 9.4360 1.7271 1.8633 25 6 8.1818 2.3097 1.8695 26 7 7.9649 3.5918 2.5766 27 8 8.9139 4.2030 3.0344 28 8 6.8376 4.0357 2.7007 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5850 3.4698 0.8888 35 1 3.5843 3.4693 -0.8912 36 1 4.5200 5.6518 2.3427 37 1 5.6846 -1.7347 -1.2261 38 1 7.3560 -1.1937 -1.5134 39 1 6.9513 -2.0827 -0.0254 40 1 8.7597 -1.0231 0.0286 41 1 10.6232 0.0789 1.2000 42 1 10.2562 2.2083 2.3752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227695902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:01 Heat of formation + Delta-G solvation = -116.709347 kcal Electronic energy + Delta-G solvation = -31927.198478 eV Core-core repulsion = 27457.101950 eV Total energy + Delta-G solvation = -4470.096528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.00261 -39.84328 -39.52068 -37.38898 -36.70369 -35.68074 -35.08926 -33.27252 -31.50572 -30.83016 -30.23432 -29.11387 -27.09646 -26.20197 -25.21817 -23.26304 -22.35224 -21.46246 -21.38352 -19.78010 -18.67658 -17.48815 -17.45797 -16.84926 -16.42559 -16.30318 -16.15271 -15.92474 -15.59175 -15.40446 -15.25846 -14.72229 -14.42537 -13.79006 -13.68716 -13.57907 -12.95024 -12.75523 -12.63768 -12.24792 -11.96968 -11.96587 -11.79107 -11.41391 -11.20022 -10.98733 -10.95552 -10.92656 -10.85842 -10.63719 -10.30082 -10.19693 -10.01091 -9.84110 -9.80250 -9.53074 -9.36987 -8.90711 -8.49848 -8.44695 -7.64857 -6.14516 -4.32796 0.73822 1.53131 2.32565 2.51408 3.20944 3.29262 3.40533 3.42637 3.46710 3.65589 3.76227 4.36857 4.58364 4.91091 5.10198 5.12573 5.19506 5.22896 5.29932 5.31913 5.37613 5.42741 5.43826 5.54897 5.65951 5.77139 5.93898 6.01257 6.13235 6.20166 6.29243 6.40906 6.46058 6.57516 6.63552 6.89756 7.15988 7.42231 7.58113 7.63700 7.76857 8.00269 8.53164 8.72358 8.84906 8.97392 9.42865 10.84771 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009542 B = 0.006349 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.589663 B = 4409.150077 C = 6649.776750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.445 3.555 5 O -0.490 6.490 6 C -0.099 4.099 7 C 0.240 3.760 8 H 0.022 0.978 9 C -0.574 4.574 10 H 0.059 0.941 11 C 0.106 3.894 12 N -0.808 5.808 13 Si 0.881 3.119 14 H -0.275 1.275 15 H -0.279 1.279 16 H -0.270 1.270 17 O -0.296 6.296 18 C 0.187 3.813 19 C 0.082 3.918 20 O -0.255 6.255 21 C 0.028 3.972 22 C -0.170 4.170 23 C -0.117 4.117 24 C -0.094 4.094 25 C -0.038 4.038 26 N 0.021 4.979 27 O -0.263 6.263 28 O -0.025 6.025 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.150 0.850 35 H 0.097 0.903 36 H 0.272 0.728 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -11.643 -3.808 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.289 6.289 4 C 0.289 3.711 5 O -0.376 6.376 6 C -0.137 4.137 7 C 0.188 3.812 8 H 0.040 0.960 9 C -0.609 4.609 10 H 0.078 0.922 11 C -0.106 4.106 12 N -0.442 5.442 13 Si 0.707 3.293 14 H -0.200 1.200 15 H -0.205 1.205 16 H -0.195 1.195 17 O -0.211 6.211 18 C 0.137 3.863 19 C 0.035 3.965 20 O -0.166 6.166 21 C -0.068 4.068 22 C -0.189 4.189 23 C -0.136 4.136 24 C -0.113 4.113 25 C -0.122 4.122 26 N 0.540 4.460 27 O -0.448 6.448 28 O -0.270 6.270 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.167 0.833 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.639 -12.391 -3.823 12.983 hybrid contribution 0.768 0.738 -0.133 1.074 sum 0.129 -11.653 -3.957 12.307 Atomic orbital electron populations 1.21774 0.93595 1.02122 1.03276 1.22760 0.94604 0.82171 1.01679 1.86585 1.26615 1.30553 1.85100 1.24967 0.79425 0.94650 0.72082 1.90682 1.59422 1.43006 1.44503 1.21826 0.95964 0.88255 1.07612 1.19775 0.89107 0.91433 0.80864 0.95959 1.21451 1.29230 0.94111 1.16150 0.92234 1.24837 0.93525 0.98571 0.93641 1.69637 1.27757 1.33467 1.13339 0.86702 0.79491 0.84198 0.78882 1.20016 1.20451 1.19493 1.86365 1.24136 1.71433 1.39180 1.17648 0.87445 0.88563 0.92636 1.19487 0.88032 0.93243 0.95771 1.86673 1.30383 1.35156 1.64424 1.22994 1.02502 0.85240 0.96052 1.21362 0.92332 1.01720 1.03525 1.20606 0.99016 0.95029 0.98963 1.20677 0.94803 0.95927 0.99883 1.21082 0.95056 0.88790 1.07316 1.43362 1.01216 1.01515 0.99930 1.94405 1.35786 1.60153 1.54410 1.94853 1.07734 1.68486 1.55933 0.91810 0.91064 0.91637 0.92213 0.91970 0.83269 0.88481 0.91746 0.88551 0.93495 0.93464 0.84808 0.84713 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.29 37.15 0.38 -1.24 16 2 C 0.06 0.89 6.19 37.15 0.23 1.12 16 3 O -0.37 -6.74 10.22 -39.26 -0.40 -7.14 16 4 C 0.45 9.21 7.84 36.00 0.28 9.49 16 5 O -0.49 -10.58 11.81 -28.70 -0.34 -10.92 16 6 C -0.10 -2.20 5.12 -27.88 -0.14 -2.35 16 7 C 0.24 5.84 1.66 -27.88 -0.05 5.80 16 8 H 0.02 0.55 7.02 -51.93 -0.36 0.19 16 9 C -0.57 -14.96 8.43 -34.44 -0.29 -15.25 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.11 2.73 3.22 -17.82 -0.06 2.67 16 12 N -0.81 -20.85 8.86 55.43 0.49 -20.36 16 13 Si 0.88 20.91 29.54 -169.99 -5.02 15.89 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 17 O -0.30 -7.42 6.64 -51.90 -0.34 -7.76 16 18 C 0.19 4.26 5.63 -39.12 -0.22 4.04 16 19 C 0.08 1.58 6.42 -39.12 -0.25 1.33 16 20 O -0.26 -4.78 6.16 -49.25 -0.30 -5.08 16 21 C 0.03 0.36 9.81 101.05 0.99 1.35 16 22 C -0.17 -2.57 9.04 -39.46 -0.36 -2.93 16 23 C -0.12 -1.70 10.04 -39.58 -0.40 -2.10 16 24 C -0.09 -1.66 9.55 -39.58 -0.38 -2.04 16 25 C -0.04 -0.84 6.84 -79.83 -0.55 -1.39 16 26 N 0.02 0.53 4.45 34.02 0.15 0.68 16 27 O -0.26 -6.50 18.47 -29.46 -0.54 -7.05 16 28 O -0.02 -0.66 12.39 -36.46 -0.45 -1.11 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 33 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.15 3.60 5.83 -51.93 -0.30 3.30 16 35 H 0.10 2.01 8.14 -51.93 -0.42 1.58 16 36 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 39 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 40 H 0.13 1.54 6.30 -52.49 -0.33 1.21 16 41 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 42 H 0.14 2.30 7.63 -52.49 -0.40 1.90 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -30.77 353.19 -7.36 -38.13 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.12 Total: 0.88 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.80 Total: -1.49 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.64 Total: -19.67 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -2.38 Total: -39.06 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.77 -7.36 -38.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227695902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.584 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds