Wall clock time and date at job start Tue Mar 31 2020 23:40:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 O 1.45200 * 109.47084 * 2 1
4 4 C 1.34232 * 117.00123 * 180.02562 * 3 2 1
5 5 O 1.20822 * 119.99760 * 359.97438 * 4 3 2
6 6 C 1.50696 * 119.99836 * 179.97438 * 4 3 2
7 7 C 1.53005 * 109.46948 * 179.97438 * 6 4 3
8 8 H 1.09000 * 109.47290 * 54.99662 * 7 6 4
9 9 C 1.50695 * 109.47304 * 174.99871 * 7 6 4
10 10 H 1.07998 * 120.00196 * 234.26297 * 9 7 6
11 11 C 1.37879 * 119.99646 * 54.26373 * 9 7 6
12 12 N 1.31515 * 120.00444 * 359.97438 * 11 9 7
13 13 Si 1.86806 * 119.99569 * 179.97438 * 11 9 7
14 14 H 1.48493 * 109.47318 * 0.02562 * 13 11 9
15 15 H 1.48504 * 109.47020 * 120.00042 * 13 11 9
16 16 H 1.48501 * 109.46858 * 239.99737 * 13 11 9
17 17 O 1.42904 * 109.47174 * 295.00042 * 7 6 4
18 18 C 1.35989 * 117.00014 * 157.63004 * 17 7 6
19 19 C 1.39202 * 120.07120 * 287.32808 * 18 17 7
20 20 O 1.35991 * 120.07293 * 359.95849 * 19 18 17
21 21 C 1.42899 * 116.99836 * 180.02562 * 20 19 18
22 22 C 1.38523 * 119.84942 * 179.97438 * 19 18 17
23 23 C 1.38287 * 120.00029 * 0.02562 * 22 19 18
24 24 C 1.38205 * 120.14774 * 359.97438 * 23 22 19
25 25 C 1.38288 * 120.14631 * 359.97438 * 24 23 22
26 26 N 1.48015 * 119.99953 * 180.02562 * 25 24 23
27 27 O 1.21807 * 119.99887 * 7.57411 * 26 25 24
28 28 O 1.21795 * 120.00193 * 187.57258 * 26 25 24
29 29 H 1.08996 * 109.47680 * 59.99839 * 1 2 3
30 30 H 1.09003 * 109.47214 * 180.02562 * 1 2 3
31 31 H 1.09004 * 109.47004 * 299.99778 * 1 2 3
32 32 H 1.08997 * 109.47099 * 239.99867 * 2 1 3
33 33 H 1.08999 * 109.47143 * 119.99649 * 2 1 3
34 34 H 1.08994 * 109.47248 * 60.00152 * 6 4 3
35 35 H 1.09000 * 109.47105 * 299.99748 * 6 4 3
36 36 H 0.96998 * 120.00022 * 180.02562 * 12 11 9
37 37 H 1.08991 * 109.47277 * 179.97438 * 21 20 19
38 38 H 1.08994 * 109.47508 * 300.00464 * 21 20 19
39 39 H 1.09005 * 109.46593 * 60.00428 * 21 20 19
40 40 H 1.08002 * 120.00039 * 180.27543 * 22 19 18
41 41 H 1.07999 * 119.92096 * 180.02562 * 23 22 19
42 42 H 1.08002 * 119.92491 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3447 1.5449 -0.0005
5 8 4.0807 0.5867 -0.0005
6 6 3.9206 2.9374 -0.0012
7 6 5.4486 2.8574 -0.0010
8 1 5.7806 2.2493 -0.8425
9 6 6.0243 4.2445 -0.1255
10 1 6.7320 4.4670 -0.9104
11 6 5.6475 5.2295 0.7627
12 7 4.7853 4.9587 1.7182
13 14 6.3617 6.9487 0.6088
14 1 7.3012 6.9934 -0.5403
15 1 5.2631 7.9231 0.3875
16 1 7.0879 7.2965 1.8566
17 8 5.8944 2.2644 1.2203
18 6 7.1284 1.6930 1.2148
19 6 7.3359 0.4876 0.5503
20 8 6.3049 -0.1216 -0.0941
21 6 6.5912 -1.3563 -0.7540
22 6 8.5949 -0.0901 0.5471
23 6 9.6420 0.5303 1.2036
24 6 9.4360 1.7271 1.8633
25 6 8.1818 2.3097 1.8695
26 7 7.9649 3.5918 2.5766
27 8 8.9139 4.2030 3.0344
28 8 6.8376 4.0357 2.7007
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3634 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8900
34 1 3.5850 3.4698 0.8888
35 1 3.5843 3.4693 -0.8912
36 1 4.5200 5.6518 2.3427
37 1 5.6846 -1.7347 -1.2261
38 1 7.3560 -1.1937 -1.5134
39 1 6.9513 -2.0827 -0.0254
40 1 8.7597 -1.0231 0.0286
41 1 10.6232 0.0789 1.2000
42 1 10.2562 2.2083 2.3752
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001227695902.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:40:00
Heat of formation + Delta-G solvation = -133.111554 kcal
Electronic energy + Delta-G solvation = -31927.909731 eV
Core-core repulsion = 27457.101950 eV
Total energy + Delta-G solvation = -4470.807781 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.129 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.78369 -41.37535 -41.02253 -38.93434 -38.15854 -37.23972 -36.94085 -35.11546
-32.78433 -32.32006 -31.80676 -30.55434 -28.26060 -28.04352 -26.87569 -24.71415
-23.68459 -22.99109 -22.94444 -21.40306 -20.26273 -19.30065 -19.17136 -18.42896
-18.16090 -17.81841 -17.73756 -17.35156 -17.23127 -16.90343 -16.57689 -16.37614
-15.95453 -15.27996 -15.00472 -14.99252 -14.57957 -13.97907 -13.84847 -13.53335
-13.41507 -13.27229 -13.23477 -12.90436 -12.82235 -12.73560 -12.41400 -12.36066
-12.24837 -12.15388 -12.09076 -12.06172 -11.75017 -11.69722 -11.36105 -11.31208
-11.03649 -10.55913 -10.35612 -10.08419 -9.11049 -8.08371 -6.32250 -0.90260
0.14867 0.61123 0.83968 1.36659 1.45035 1.49552 1.58044 2.00955
2.33177 2.38049 2.43469 3.01618 3.33971 3.74229 3.85360 4.04867
4.08063 4.08752 4.10872 4.18082 4.26238 4.36452 4.42087 4.43003
4.65611 4.67749 4.74588 4.87253 4.95199 4.98030 5.00977 5.09465
5.13745 5.20975 5.34060 5.50259 5.65593 5.75253 5.82087 6.10363
6.40055 6.62561 7.01987 7.06666 7.14433 7.47295 8.90573
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.009542 B = 0.006349 C = 0.004210
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2933.589663 B = 4409.150077 C = 6649.776750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.054 3.946
3 O -0.375 6.375
4 C 0.450 3.550
5 O -0.499 6.499
6 C -0.096 4.096
7 C 0.252 3.748
8 H 0.009 0.991
9 C -0.595 4.595
10 H 0.039 0.961
11 C 0.087 3.913
12 N -0.822 5.822
13 Si 0.915 3.085
14 H -0.280 1.280
15 H -0.260 1.260
16 H -0.286 1.286
17 O -0.317 6.317
18 C 0.138 3.862
19 C 0.073 3.927
20 O -0.287 6.287
21 C 0.017 3.983
22 C -0.146 4.146
23 C -0.086 4.086
24 C -0.100 4.100
25 C -0.062 4.062
26 N 0.022 4.978
27 O -0.257 6.257
28 O -0.084 6.084
29 H 0.068 0.932
30 H 0.102 0.898
31 H 0.062 0.938
32 H 0.067 0.933
33 H 0.057 0.943
34 H 0.129 0.871
35 H 0.104 0.896
36 H 0.270 0.730
37 H 0.102 0.898
38 H 0.069 0.931
39 H 0.072 0.928
40 H 0.183 0.817
41 H 0.194 0.806
42 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.720 -14.837 -4.813 15.615
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.019 4.019
3 O -0.293 6.293
4 C 0.293 3.707
5 O -0.385 6.385
6 C -0.134 4.134
7 C 0.199 3.801
8 H 0.027 0.973
9 C -0.630 4.630
10 H 0.058 0.942
11 C -0.123 4.123
12 N -0.455 5.455
13 Si 0.741 3.259
14 H -0.205 1.205
15 H -0.184 1.184
16 H -0.212 1.212
17 O -0.233 6.233
18 C 0.089 3.911
19 C 0.026 3.974
20 O -0.200 6.200
21 C -0.077 4.077
22 C -0.164 4.164
23 C -0.104 4.104
24 C -0.120 4.120
25 C -0.147 4.147
26 N 0.534 4.466
27 O -0.447 6.447
28 O -0.317 6.317
29 H 0.087 0.913
30 H 0.120 0.880
31 H 0.081 0.919
32 H 0.086 0.914
33 H 0.075 0.925
34 H 0.147 0.853
35 H 0.122 0.878
36 H 0.080 0.920
37 H 0.120 0.880
38 H 0.087 0.913
39 H 0.090 0.910
40 H 0.201 0.799
41 H 0.211 0.789
42 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges 0.730 -15.586 -4.836 16.336
hybrid contribution 0.518 1.432 0.151 1.530
sum 1.248 -14.155 -4.685 14.962
Atomic orbital electron populations
1.21800 0.90558 1.04204 1.03428 1.23147 0.96944 0.80013 1.01829
1.86548 1.24937 1.33230 1.84592 1.24477 0.80322 0.93756 0.72127
1.90664 1.59922 1.43019 1.44944 1.21607 0.95272 0.89566 1.06944
1.19506 0.89873 0.90163 0.80527 0.97341 1.21432 1.29646 0.95693
1.16243 0.94235 1.25121 0.93681 1.00072 0.93451 1.69707 1.28528
1.33678 1.13610 0.86192 0.79319 0.82793 0.77565 1.20542 1.18448
1.21220 1.86270 1.25765 1.72210 1.39071 1.18155 0.86919 0.90620
0.95419 1.19579 0.89816 0.92448 0.95603 1.86629 1.31236 1.37320
1.64770 1.23335 1.03870 0.83580 0.96936 1.21954 0.90290 1.02532
1.01644 1.21296 1.01161 0.92694 0.95240 1.21117 0.93171 0.97224
1.00458 1.21485 0.97134 0.87610 1.08453 1.43833 1.00752 1.02470
0.99535 1.94335 1.35538 1.60846 1.53971 1.94862 1.08225 1.70126
1.58472 0.91265 0.87951 0.91886 0.91413 0.92501 0.85306 0.87761
0.91950 0.87972 0.91274 0.90999 0.79948 0.78923 0.82436
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.80 10.29 71.98 0.74 -2.06 16
2 C 0.05 1.51 6.19 71.98 0.45 1.95 16
3 O -0.37 -13.77 10.22 -51.44 -0.53 -14.30 16
4 C 0.45 19.12 7.84 71.23 0.56 19.68 16
5 O -0.50 -21.84 11.81 31.50 0.37 -21.47 16
6 C -0.10 -4.50 5.12 29.85 0.15 -4.35 16
7 C 0.25 12.88 1.66 29.85 0.05 12.93 16
8 H 0.01 0.44 7.02 -2.39 -0.02 0.43 16
9 C -0.59 -32.67 8.43 25.60 0.22 -32.46 16
10 H 0.04 2.24 7.81 -2.91 -0.02 2.22 16
11 C 0.09 4.71 3.22 84.66 0.27 4.99 16
12 N -0.82 -44.79 8.86 21.45 0.19 -44.60 16
13 Si 0.92 44.47 29.54 68.60 2.03 46.49 16
14 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16
15 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16
16 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16
17 O -0.32 -16.65 6.64 -62.65 -0.42 -17.07 16
18 C 0.14 6.36 5.63 22.57 0.13 6.48 16
19 C 0.07 2.69 6.42 22.57 0.14 2.84 16
20 O -0.29 -10.38 6.16 -65.21 -0.40 -10.79 16
21 C 0.02 0.39 9.81 113.37 1.11 1.50 16
22 C -0.15 -3.67 9.04 22.35 0.20 -3.46 16
23 C -0.09 -2.00 10.04 22.27 0.22 -1.78 16
24 C -0.10 -3.30 9.55 22.27 0.21 -3.09 16
25 C -0.06 -2.77 6.84 36.45 0.25 -2.52 16
26 N 0.02 1.14 4.45 -46.28 -0.21 0.93 16
27 O -0.26 -12.94 18.47 18.88 0.35 -12.59 16
28 O -0.08 -4.77 12.39 25.59 0.32 -4.45 16
29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16
31 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16
32 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16
33 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16
34 H 0.13 6.61 5.83 -2.39 -0.01 6.60 16
35 H 0.10 4.54 8.14 -2.39 -0.02 4.52 16
36 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16
37 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16
38 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16
39 H 0.07 1.24 7.67 -2.38 -0.02 1.22 16
40 H 0.18 2.84 6.30 -2.91 -0.02 2.82 16
41 H 0.19 2.42 8.06 -2.91 -0.02 2.39 16
42 H 0.16 4.63 7.63 -2.91 -0.02 4.61 16
Total: -1.00 -73.63 353.19 7.47 -66.16
By element:
Atomic # 1 Polarization: 9.97 SS G_CDS: 1.06 Total: 11.03 kcal
Atomic # 6 Polarization: -4.07 SS G_CDS: 4.71 Total: 0.64 kcal
Atomic # 7 Polarization: -43.65 SS G_CDS: -0.02 Total: -43.67 kcal
Atomic # 8 Polarization: -80.36 SS G_CDS: -0.31 Total: -80.66 kcal
Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal
Total: -73.63 7.47 -66.16 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001227695902.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.952 kcal
(2) G-P(sol) polarization free energy of solvation -73.632 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.584 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.473 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.159 kcal
(6) G-S(sol) free energy of system = (1) + (5) -133.112 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds