Wall clock time and date at job start Tue Mar 31 2020 23:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45200 * 109.47084 * 2 1 4 4 C 1.34232 * 117.00123 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99760 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99836 * 179.97438 * 4 3 2 7 7 C 1.53005 * 109.46948 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47290 * 54.99662 * 7 6 4 9 9 C 1.50695 * 109.47304 * 174.99871 * 7 6 4 10 10 H 1.07998 * 120.00196 * 234.26297 * 9 7 6 11 11 C 1.37879 * 119.99646 * 54.26373 * 9 7 6 12 12 N 1.31515 * 120.00444 * 359.97438 * 11 9 7 13 13 Si 1.86806 * 119.99569 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47318 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47020 * 120.00042 * 13 11 9 16 16 H 1.48501 * 109.46858 * 239.99737 * 13 11 9 17 17 O 1.42904 * 109.47174 * 295.00042 * 7 6 4 18 18 C 1.35989 * 117.00014 * 157.63004 * 17 7 6 19 19 C 1.39202 * 120.07120 * 287.32808 * 18 17 7 20 20 O 1.35991 * 120.07293 * 359.95849 * 19 18 17 21 21 C 1.42899 * 116.99836 * 180.02562 * 20 19 18 22 22 C 1.38523 * 119.84942 * 179.97438 * 19 18 17 23 23 C 1.38287 * 120.00029 * 0.02562 * 22 19 18 24 24 C 1.38205 * 120.14774 * 359.97438 * 23 22 19 25 25 C 1.38288 * 120.14631 * 359.97438 * 24 23 22 26 26 N 1.48015 * 119.99953 * 180.02562 * 25 24 23 27 27 O 1.21807 * 119.99887 * 7.57411 * 26 25 24 28 28 O 1.21795 * 120.00193 * 187.57258 * 26 25 24 29 29 H 1.08996 * 109.47680 * 59.99839 * 1 2 3 30 30 H 1.09003 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47004 * 299.99778 * 1 2 3 32 32 H 1.08997 * 109.47099 * 239.99867 * 2 1 3 33 33 H 1.08999 * 109.47143 * 119.99649 * 2 1 3 34 34 H 1.08994 * 109.47248 * 60.00152 * 6 4 3 35 35 H 1.09000 * 109.47105 * 299.99748 * 6 4 3 36 36 H 0.96998 * 120.00022 * 180.02562 * 12 11 9 37 37 H 1.08991 * 109.47277 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.47508 * 300.00464 * 21 20 19 39 39 H 1.09005 * 109.46593 * 60.00428 * 21 20 19 40 40 H 1.08002 * 120.00039 * 180.27543 * 22 19 18 41 41 H 1.07999 * 119.92096 * 180.02562 * 23 22 19 42 42 H 1.08002 * 119.92491 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9374 -0.0012 7 6 5.4486 2.8574 -0.0010 8 1 5.7806 2.2493 -0.8425 9 6 6.0243 4.2445 -0.1255 10 1 6.7320 4.4670 -0.9104 11 6 5.6475 5.2295 0.7627 12 7 4.7853 4.9587 1.7182 13 14 6.3617 6.9487 0.6088 14 1 7.3012 6.9934 -0.5403 15 1 5.2631 7.9231 0.3875 16 1 7.0879 7.2965 1.8566 17 8 5.8944 2.2644 1.2203 18 6 7.1284 1.6930 1.2148 19 6 7.3359 0.4876 0.5503 20 8 6.3049 -0.1216 -0.0941 21 6 6.5912 -1.3563 -0.7540 22 6 8.5949 -0.0901 0.5471 23 6 9.6420 0.5303 1.2036 24 6 9.4360 1.7271 1.8633 25 6 8.1818 2.3097 1.8695 26 7 7.9649 3.5918 2.5766 27 8 8.9139 4.2030 3.0344 28 8 6.8376 4.0357 2.7007 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5850 3.4698 0.8888 35 1 3.5843 3.4693 -0.8912 36 1 4.5200 5.6518 2.3427 37 1 5.6846 -1.7347 -1.2261 38 1 7.3560 -1.1937 -1.5134 39 1 6.9513 -2.0827 -0.0254 40 1 8.7597 -1.0231 0.0286 41 1 10.6232 0.0789 1.2000 42 1 10.2562 2.2083 2.3752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227695902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:00 Heat of formation + Delta-G solvation = -133.111554 kcal Electronic energy + Delta-G solvation = -31927.909731 eV Core-core repulsion = 27457.101950 eV Total energy + Delta-G solvation = -4470.807781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.78369 -41.37535 -41.02253 -38.93434 -38.15854 -37.23972 -36.94085 -35.11546 -32.78433 -32.32006 -31.80676 -30.55434 -28.26060 -28.04352 -26.87569 -24.71415 -23.68459 -22.99109 -22.94444 -21.40306 -20.26273 -19.30065 -19.17136 -18.42896 -18.16090 -17.81841 -17.73756 -17.35156 -17.23127 -16.90343 -16.57689 -16.37614 -15.95453 -15.27996 -15.00472 -14.99252 -14.57957 -13.97907 -13.84847 -13.53335 -13.41507 -13.27229 -13.23477 -12.90436 -12.82235 -12.73560 -12.41400 -12.36066 -12.24837 -12.15388 -12.09076 -12.06172 -11.75017 -11.69722 -11.36105 -11.31208 -11.03649 -10.55913 -10.35612 -10.08419 -9.11049 -8.08371 -6.32250 -0.90260 0.14867 0.61123 0.83968 1.36659 1.45035 1.49552 1.58044 2.00955 2.33177 2.38049 2.43469 3.01618 3.33971 3.74229 3.85360 4.04867 4.08063 4.08752 4.10872 4.18082 4.26238 4.36452 4.42087 4.43003 4.65611 4.67749 4.74588 4.87253 4.95199 4.98030 5.00977 5.09465 5.13745 5.20975 5.34060 5.50259 5.65593 5.75253 5.82087 6.10363 6.40055 6.62561 7.01987 7.06666 7.14433 7.47295 8.90573 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009542 B = 0.006349 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.589663 B = 4409.150077 C = 6649.776750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 O -0.375 6.375 4 C 0.450 3.550 5 O -0.499 6.499 6 C -0.096 4.096 7 C 0.252 3.748 8 H 0.009 0.991 9 C -0.595 4.595 10 H 0.039 0.961 11 C 0.087 3.913 12 N -0.822 5.822 13 Si 0.915 3.085 14 H -0.280 1.280 15 H -0.260 1.260 16 H -0.286 1.286 17 O -0.317 6.317 18 C 0.138 3.862 19 C 0.073 3.927 20 O -0.287 6.287 21 C 0.017 3.983 22 C -0.146 4.146 23 C -0.086 4.086 24 C -0.100 4.100 25 C -0.062 4.062 26 N 0.022 4.978 27 O -0.257 6.257 28 O -0.084 6.084 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.270 0.730 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.183 0.817 41 H 0.194 0.806 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.720 -14.837 -4.813 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 O -0.293 6.293 4 C 0.293 3.707 5 O -0.385 6.385 6 C -0.134 4.134 7 C 0.199 3.801 8 H 0.027 0.973 9 C -0.630 4.630 10 H 0.058 0.942 11 C -0.123 4.123 12 N -0.455 5.455 13 Si 0.741 3.259 14 H -0.205 1.205 15 H -0.184 1.184 16 H -0.212 1.212 17 O -0.233 6.233 18 C 0.089 3.911 19 C 0.026 3.974 20 O -0.200 6.200 21 C -0.077 4.077 22 C -0.164 4.164 23 C -0.104 4.104 24 C -0.120 4.120 25 C -0.147 4.147 26 N 0.534 4.466 27 O -0.447 6.447 28 O -0.317 6.317 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.147 0.853 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.201 0.799 41 H 0.211 0.789 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.730 -15.586 -4.836 16.336 hybrid contribution 0.518 1.432 0.151 1.530 sum 1.248 -14.155 -4.685 14.962 Atomic orbital electron populations 1.21800 0.90558 1.04204 1.03428 1.23147 0.96944 0.80013 1.01829 1.86548 1.24937 1.33230 1.84592 1.24477 0.80322 0.93756 0.72127 1.90664 1.59922 1.43019 1.44944 1.21607 0.95272 0.89566 1.06944 1.19506 0.89873 0.90163 0.80527 0.97341 1.21432 1.29646 0.95693 1.16243 0.94235 1.25121 0.93681 1.00072 0.93451 1.69707 1.28528 1.33678 1.13610 0.86192 0.79319 0.82793 0.77565 1.20542 1.18448 1.21220 1.86270 1.25765 1.72210 1.39071 1.18155 0.86919 0.90620 0.95419 1.19579 0.89816 0.92448 0.95603 1.86629 1.31236 1.37320 1.64770 1.23335 1.03870 0.83580 0.96936 1.21954 0.90290 1.02532 1.01644 1.21296 1.01161 0.92694 0.95240 1.21117 0.93171 0.97224 1.00458 1.21485 0.97134 0.87610 1.08453 1.43833 1.00752 1.02470 0.99535 1.94335 1.35538 1.60846 1.53971 1.94862 1.08225 1.70126 1.58472 0.91265 0.87951 0.91886 0.91413 0.92501 0.85306 0.87761 0.91950 0.87972 0.91274 0.90999 0.79948 0.78923 0.82436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 10.29 71.98 0.74 -2.06 16 2 C 0.05 1.51 6.19 71.98 0.45 1.95 16 3 O -0.37 -13.77 10.22 -51.44 -0.53 -14.30 16 4 C 0.45 19.12 7.84 71.23 0.56 19.68 16 5 O -0.50 -21.84 11.81 31.50 0.37 -21.47 16 6 C -0.10 -4.50 5.12 29.85 0.15 -4.35 16 7 C 0.25 12.88 1.66 29.85 0.05 12.93 16 8 H 0.01 0.44 7.02 -2.39 -0.02 0.43 16 9 C -0.59 -32.67 8.43 25.60 0.22 -32.46 16 10 H 0.04 2.24 7.81 -2.91 -0.02 2.22 16 11 C 0.09 4.71 3.22 84.66 0.27 4.99 16 12 N -0.82 -44.79 8.86 21.45 0.19 -44.60 16 13 Si 0.92 44.47 29.54 68.60 2.03 46.49 16 14 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 15 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 17 O -0.32 -16.65 6.64 -62.65 -0.42 -17.07 16 18 C 0.14 6.36 5.63 22.57 0.13 6.48 16 19 C 0.07 2.69 6.42 22.57 0.14 2.84 16 20 O -0.29 -10.38 6.16 -65.21 -0.40 -10.79 16 21 C 0.02 0.39 9.81 113.37 1.11 1.50 16 22 C -0.15 -3.67 9.04 22.35 0.20 -3.46 16 23 C -0.09 -2.00 10.04 22.27 0.22 -1.78 16 24 C -0.10 -3.30 9.55 22.27 0.21 -3.09 16 25 C -0.06 -2.77 6.84 36.45 0.25 -2.52 16 26 N 0.02 1.14 4.45 -46.28 -0.21 0.93 16 27 O -0.26 -12.94 18.47 18.88 0.35 -12.59 16 28 O -0.08 -4.77 12.39 25.59 0.32 -4.45 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 33 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 34 H 0.13 6.61 5.83 -2.39 -0.01 6.60 16 35 H 0.10 4.54 8.14 -2.39 -0.02 4.52 16 36 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 39 H 0.07 1.24 7.67 -2.38 -0.02 1.22 16 40 H 0.18 2.84 6.30 -2.91 -0.02 2.82 16 41 H 0.19 2.42 8.06 -2.91 -0.02 2.39 16 42 H 0.16 4.63 7.63 -2.91 -0.02 4.61 16 Total: -1.00 -73.63 353.19 7.47 -66.16 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.06 Total: 11.03 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 4.71 Total: 0.64 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.02 Total: -43.67 kcal Atomic # 8 Polarization: -80.36 SS G_CDS: -0.31 Total: -80.66 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -73.63 7.47 -66.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227695902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.952 kcal (2) G-P(sol) polarization free energy of solvation -73.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds