Wall clock time and date at job start Tue Mar 31 2020 23:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47208 * 2 1 4 4 C 1.34221 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47461 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.47001 * 54.49014 * 7 6 4 9 9 C 1.50705 * 109.47438 * 174.48572 * 7 6 4 10 10 H 1.07994 * 120.00113 * 94.63847 * 9 7 6 11 11 C 1.37879 * 119.99781 * 274.64605 * 9 7 6 12 12 N 1.31511 * 120.00422 * 6.43684 * 11 9 7 13 13 Si 1.86802 * 119.99663 * 186.43573 * 11 9 7 14 14 H 1.48500 * 109.47115 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47254 * 300.00141 * 13 11 9 16 16 H 1.48496 * 109.46969 * 60.00252 * 13 11 9 17 17 O 1.42895 * 109.47404 * 294.48768 * 7 6 4 18 18 C 1.35739 * 117.00182 * 149.99542 * 17 7 6 19 19 N 1.31694 * 119.65369 * 0.02562 * 18 17 7 20 20 C 1.33022 * 121.60627 * 179.97438 * 19 18 17 21 21 C 1.47765 * 119.63419 * 179.97438 * 20 19 18 22 22 O 1.21472 * 120.00021 * 180.02562 * 21 20 19 23 23 O 1.34725 * 120.00223 * 359.97438 * 21 20 19 24 24 C 1.45199 * 117.00113 * 180.02562 * 23 21 20 25 25 C 1.39322 * 120.72801 * 359.97438 * 20 19 18 26 26 C 1.38520 * 119.24633 * 359.97438 * 25 20 19 27 27 C 1.38923 * 118.51957 * 359.75693 * 26 25 20 28 28 O 1.35766 * 120.39524 * 180.23884 * 27 26 25 29 29 H 1.08999 * 109.46872 * 299.99702 * 1 2 3 30 30 H 1.08994 * 109.47314 * 59.99343 * 1 2 3 31 31 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46872 * 240.00298 * 2 1 3 33 33 H 1.09000 * 109.46938 * 120.00522 * 2 1 3 34 34 H 1.09001 * 109.47159 * 59.99909 * 6 4 3 35 35 H 1.08995 * 109.47433 * 300.00373 * 6 4 3 36 36 H 0.97002 * 119.99555 * 355.08174 * 12 11 9 37 37 H 1.09003 * 109.46991 * 60.00481 * 24 23 21 38 38 H 1.08999 * 109.47153 * 180.02562 * 24 23 21 39 39 H 1.08999 * 109.47067 * 300.00549 * 24 23 21 40 40 H 1.08000 * 120.38092 * 179.97438 * 25 20 19 41 41 H 1.08002 * 120.74242 * 179.97438 * 26 25 20 42 42 H 0.96702 * 114.00324 * 270.24840 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2425 -0.8370 9 6 6.0243 4.2434 -0.1361 10 1 6.3053 4.8003 0.7455 11 6 6.1922 4.8005 -1.3861 12 7 5.7351 4.1778 -2.4504 13 14 7.0691 6.4399 -1.5678 14 1 7.1194 6.8180 -3.0030 15 1 6.3338 7.4815 -0.8065 16 1 8.4515 6.3232 -1.0384 17 8 5.8952 2.2742 1.2256 18 6 7.0526 1.5662 1.1856 19 7 7.7043 1.4467 0.0474 20 6 8.8419 0.7624 -0.0360 21 6 9.5368 0.6558 -1.3357 22 8 10.5759 0.0322 -1.4196 23 8 9.0175 1.2494 -2.4280 24 6 9.7535 1.1025 -3.6709 25 6 9.3855 0.1451 1.0885 26 6 8.7276 0.2507 2.3029 27 6 7.5448 0.9775 2.3556 28 8 6.8713 1.1096 3.5270 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5852 3.4690 0.8905 35 1 3.5844 3.4701 -0.8894 36 1 5.3438 3.2944 -2.3647 37 1 9.8340 0.0450 -3.9227 38 1 9.2279 1.6273 -4.4687 39 1 10.7514 1.5252 -3.5544 40 1 10.3093 -0.4094 1.0143 41 1 9.1271 -0.2186 3.1899 42 1 6.2203 0.4127 3.6872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227819990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:14 Heat of formation + Delta-G solvation = -237.141453 kcal Electronic energy + Delta-G solvation = -30494.505820 eV Core-core repulsion = 26019.186964 eV Total energy + Delta-G solvation = -4475.318856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15004 -41.58096 -41.09889 -39.12847 -38.28544 -37.65591 -37.50603 -35.54298 -33.19606 -32.94720 -32.14236 -31.03081 -28.71165 -27.76281 -25.83953 -24.99648 -24.28186 -23.26482 -22.53583 -21.72932 -19.87045 -19.75788 -19.44469 -18.95860 -18.33847 -17.88451 -17.62000 -17.54915 -17.38480 -17.05838 -16.75490 -15.93521 -15.66846 -15.46568 -15.07679 -14.99102 -14.85107 -14.55640 -14.30497 -14.05147 -13.85929 -13.79444 -13.50021 -13.36589 -13.05272 -12.84405 -12.76896 -12.68804 -12.58990 -12.53776 -12.06792 -12.02280 -11.88938 -11.86670 -11.58265 -11.56762 -10.94741 -10.77001 -10.51555 -10.48361 -9.40695 -8.66507 -6.44310 -0.70366 0.21996 1.14129 1.17583 1.52117 1.55907 1.57025 1.69345 1.79152 2.18964 2.52626 2.61109 2.89925 3.15132 3.18365 3.76533 3.76994 3.85180 3.94897 4.03130 4.07018 4.17522 4.21530 4.26409 4.27808 4.29418 4.38983 4.59752 4.72329 4.75146 4.80873 4.86774 4.88777 5.07050 5.13072 5.16026 5.23731 5.39826 5.78564 5.94969 6.33039 6.43424 6.47850 6.67197 6.72435 6.84219 7.37386 8.68768 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007675 B = 0.005077 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3647.336351 B = 5513.633513 C = 6878.945549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.363 6.363 4 C 0.466 3.534 5 O -0.534 6.534 6 C -0.100 4.100 7 C 0.220 3.780 8 H 0.035 0.965 9 C -0.621 4.621 10 H 0.045 0.955 11 C -0.003 4.003 12 N -0.907 5.907 13 Si 1.109 2.891 14 H -0.277 1.277 15 H -0.264 1.264 16 H -0.285 1.285 17 O -0.309 6.309 18 C 0.299 3.701 19 N -0.495 5.495 20 C 0.082 3.918 21 C 0.526 3.474 22 O -0.511 6.511 23 O -0.353 6.353 24 C 0.028 3.972 25 C -0.122 4.122 26 C -0.062 4.062 27 C 0.062 3.938 28 O -0.481 6.481 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.258 0.742 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.181 0.819 41 H 0.205 0.795 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.124 -9.927 6.204 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.280 6.280 4 C 0.311 3.689 5 O -0.424 6.424 6 C -0.138 4.138 7 C 0.165 3.835 8 H 0.053 0.947 9 C -0.659 4.659 10 H 0.063 0.937 11 C -0.205 4.205 12 N -0.542 5.542 13 Si 0.931 3.069 14 H -0.202 1.202 15 H -0.189 1.189 16 H -0.212 1.212 17 O -0.216 6.216 18 C 0.115 3.885 19 N -0.223 5.223 20 C -0.053 4.053 21 C 0.371 3.629 22 O -0.401 6.401 23 O -0.268 6.268 24 C -0.065 4.065 25 C -0.143 4.143 26 C -0.086 4.086 27 C 0.013 3.987 28 O -0.292 6.292 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.198 0.802 41 H 0.222 0.778 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -0.420 -8.326 4.554 9.499 hybrid contribution -0.415 -1.942 1.030 2.237 sum -0.836 -10.268 5.584 11.718 Atomic orbital electron populations 1.21815 0.89762 1.04545 1.03776 1.23321 0.97550 0.79407 1.02191 1.86548 1.23786 1.33860 1.83849 1.24282 0.80601 0.93083 0.70975 1.90583 1.61121 1.43941 1.46722 1.21880 0.96101 0.89902 1.05897 1.19750 0.88615 0.93109 0.82042 0.94685 1.22247 1.47113 1.01163 0.95334 0.93655 1.27001 0.94711 1.07395 0.91413 1.70906 1.37189 1.14136 1.32006 0.83042 0.75583 0.71685 0.76630 1.20204 1.18858 1.21156 1.86095 1.34454 1.62881 1.38156 1.20734 0.87424 0.91079 0.89234 1.67281 1.09157 1.17829 1.28069 1.20067 0.92980 0.99549 0.92700 1.20907 0.82172 0.75283 0.84558 1.90769 1.22864 1.40344 1.86121 1.86825 1.52613 1.68334 1.19002 1.23616 0.97357 1.03679 0.81840 1.22069 1.02302 0.99796 0.90174 1.22042 0.92069 0.95081 0.99448 1.18945 0.95310 1.00394 0.84063 1.84754 1.56410 1.54752 1.33248 0.90972 0.91456 0.87714 0.92124 0.91303 0.86813 0.87349 0.93175 0.90558 0.86562 0.90844 0.80190 0.77794 0.73187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 10.29 71.98 0.74 -1.83 16 2 C 0.05 1.31 6.19 71.98 0.45 1.76 16 3 O -0.36 -12.73 10.22 -51.33 -0.52 -13.25 16 4 C 0.47 19.60 7.84 71.24 0.56 20.16 16 5 O -0.53 -24.82 15.18 26.93 0.41 -24.42 16 6 C -0.10 -4.51 5.38 29.85 0.16 -4.35 16 7 C 0.22 11.51 1.04 29.85 0.03 11.54 16 8 H 0.04 2.08 5.60 -2.38 -0.01 2.07 16 9 C -0.62 -34.88 8.64 25.60 0.22 -34.66 16 10 H 0.05 2.61 7.82 -2.91 -0.02 2.58 16 11 C 0.00 -0.18 5.45 84.66 0.46 0.29 16 12 N -0.91 -53.16 13.63 21.45 0.29 -52.86 16 13 Si 1.11 50.05 29.91 68.60 2.05 52.10 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 15 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 16 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 17 O -0.31 -15.28 8.81 -66.87 -0.59 -15.87 16 18 C 0.30 13.52 7.47 85.12 0.64 14.16 16 19 N -0.50 -23.57 8.39 -297.95 -2.50 -26.07 16 20 C 0.08 3.25 6.74 41.75 0.28 3.54 16 21 C 0.53 20.90 7.94 70.34 0.56 21.46 16 22 O -0.51 -19.05 16.10 19.93 0.32 -18.73 16 23 O -0.35 -14.77 10.38 -56.35 -0.58 -15.35 16 24 C 0.03 0.83 10.56 113.37 1.20 2.03 16 25 C -0.12 -3.59 9.61 22.60 0.22 -3.37 16 26 C -0.06 -1.58 10.11 22.50 0.23 -1.35 16 27 C 0.06 2.11 6.76 22.84 0.15 2.26 16 28 O -0.48 -14.08 13.30 -77.24 -1.03 -15.11 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 33 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 34 H 0.11 4.71 8.14 -2.39 -0.02 4.70 16 35 H 0.11 5.04 7.84 -2.39 -0.02 5.02 16 36 H 0.26 15.51 6.39 -92.71 -0.59 14.91 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.18 4.11 7.62 -2.91 -0.02 4.09 16 41 H 0.21 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.41 8.00 9.06 -74.06 -0.67 7.33 16 Total: -1.00 -78.15 376.90 4.32 -73.83 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.58 Total: 24.12 kcal Atomic # 6 Polarization: 25.74 SS G_CDS: 5.89 Total: 31.63 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -2.21 Total: -78.94 kcal Atomic # 8 Polarization: -100.74 SS G_CDS: -2.00 Total: -102.73 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Total: -78.15 4.32 -73.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227819990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.315 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds