Wall clock time and date at job start Tue Mar 31 2020 23:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21251 * 119.99543 * 2 1 4 4 N 1.34768 * 120.00099 * 180.28214 * 2 1 3 5 5 C 1.37596 * 119.99927 * 174.58999 * 4 2 1 6 6 N 1.31761 * 118.91804 * 4.83794 * 5 4 2 7 7 C 1.33407 * 121.89744 * 179.73523 * 6 5 4 8 8 C 1.47687 * 120.36248 * 180.29138 * 7 6 5 9 9 C 1.39767 * 120.07655 * 144.99115 * 8 7 6 10 10 C 1.37677 * 119.91857 * 179.71832 * 9 8 7 11 11 C 1.39126 * 120.07589 * 0.55408 * 10 9 8 12 12 O 1.35593 * 119.92094 * 179.69680 * 11 10 9 13 13 C 1.34794 * 116.99933 * 185.55812 * 12 11 10 14 14 H 1.07999 * 120.00090 * 354.94918 * 13 12 11 15 15 C 1.38706 * 120.00057 * 174.94485 * 13 12 11 16 16 N 1.31517 * 120.00271 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00099 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47447 * 89.99649 * 17 15 13 19 19 H 1.48503 * 109.47673 * 209.99972 * 17 15 13 20 20 H 1.48500 * 109.47365 * 329.99651 * 17 15 13 21 21 C 1.39124 * 120.15574 * 359.72246 * 11 10 9 22 22 C 1.37673 * 120.07686 * 359.97438 * 21 11 10 23 23 C 1.40807 * 119.28000 * 0.54734 * 7 6 5 24 24 N 1.34269 * 135.11152 * 179.71574 * 23 7 6 25 25 C 1.31652 * 108.20451 * 180.02562 * 24 23 7 26 26 N 1.32848 * 110.18388 * 359.97438 * 25 24 23 27 27 C 1.32439 * 108.70886 * 0.02562 * 26 25 24 28 28 N 1.35079 * 118.91750 * 185.11239 * 5 4 2 29 29 H 0.96998 * 120.14324 * 359.95563 * 28 5 4 30 30 H 1.08992 * 109.47387 * 89.99875 * 1 2 3 31 31 H 1.09004 * 109.46495 * 209.99555 * 1 2 3 32 32 H 1.09003 * 109.46918 * 329.99299 * 1 2 3 33 33 H 0.97001 * 120.00508 * 354.58950 * 4 2 1 34 34 H 1.08002 * 120.04539 * 359.97194 * 9 8 7 35 35 H 1.08001 * 119.96126 * 180.27392 * 10 9 8 36 36 H 0.96998 * 120.00386 * 179.97438 * 16 15 13 37 37 H 1.08004 * 119.96142 * 179.97438 * 21 11 10 38 38 H 1.08005 * 120.03957 * 180.02562 * 22 21 11 39 39 H 1.08005 * 124.90743 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 7 2.1809 -1.1671 -0.0057 5 6 3.5523 -1.1692 -0.1181 6 7 4.1930 -0.0178 -0.1218 7 6 5.5216 0.0493 -0.2225 8 6 6.2055 1.3582 -0.2167 9 6 7.4585 1.4911 0.3882 10 6 8.0958 2.7115 0.3866 11 6 7.4888 3.8142 -0.2061 12 8 8.1166 5.0161 -0.2004 13 6 7.4286 6.0681 -0.6872 14 1 6.4565 5.9180 -1.1331 15 6 7.9691 7.3435 -0.6152 16 7 7.2981 8.3699 -1.0905 17 14 9.6507 7.6031 0.1555 18 1 10.6981 7.4875 -0.8908 19 1 9.7110 8.9542 0.7689 20 1 9.8801 6.5742 1.2014 21 6 6.2391 3.6868 -0.8040 22 6 5.5989 2.4680 -0.8116 23 6 6.2643 -1.1412 -0.3398 24 7 7.5673 -1.4415 -0.4614 25 6 7.6827 -2.7510 -0.5331 26 7 6.4851 -3.3213 -0.4609 27 6 5.5692 -2.3723 -0.3405 28 7 4.1970 -2.3512 -0.2266 29 1 3.6956 -3.1815 -0.2241 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3633 0.8900 0.5140 33 1 1.6993 -2.0057 0.0693 34 1 7.9281 0.6367 0.8527 35 1 9.0659 2.8140 0.8499 36 1 7.6759 9.2618 -1.0399 37 1 5.7707 4.5450 -1.2629 38 1 4.6289 2.3697 -1.2763 39 1 8.6163 -3.2845 -0.6349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:00 Heat of formation + Delta-G solvation = 107.364190 kcal Electronic energy + Delta-G solvation = -27857.809480 eV Core-core repulsion = 23769.323931 eV Total energy + Delta-G solvation = -4088.485549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.44164 -40.82744 -39.31348 -38.85609 -37.11819 -35.34677 -34.76666 -32.59305 -31.24642 -30.80488 -30.26071 -29.69479 -28.24076 -25.79757 -24.35435 -24.08780 -22.13795 -21.70501 -21.20826 -20.64511 -19.25225 -18.38429 -17.88206 -17.55992 -17.15806 -16.94114 -16.65515 -15.90734 -15.43555 -15.21310 -14.81243 -14.49068 -14.10462 -13.88016 -13.82067 -13.73764 -13.65212 -13.23376 -12.79108 -12.70107 -12.56412 -12.33455 -12.09417 -11.55318 -11.30418 -11.06919 -11.00364 -10.83404 -10.64639 -10.28480 -10.22850 -9.89206 -9.49449 -9.23588 -9.02487 -8.83310 -8.32540 -8.22588 -7.29589 -6.59639 -4.20444 -0.20943 1.28925 1.35534 2.16303 2.16975 2.20315 2.57391 3.15959 3.19053 3.33170 3.47891 3.63476 3.77809 4.11586 4.13250 4.32913 4.42118 4.56089 4.58664 4.68079 4.80917 4.86853 4.97721 5.18250 5.20541 5.34970 5.58430 5.62182 5.76992 6.07896 6.17944 6.21896 6.32690 6.49692 6.60092 6.77812 6.94654 7.10800 7.12701 7.19620 7.29484 7.40357 7.48044 7.64251 7.67946 7.86489 8.53882 8.73249 9.34252 10.46075 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.003129 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.503224 B = 8946.641231 C =10996.358745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.504 3.496 3 O -0.436 6.436 4 N -0.655 5.655 5 C 0.609 3.391 6 N -0.504 5.504 7 C 0.382 3.618 8 C -0.177 4.177 9 C -0.005 4.005 10 C -0.203 4.203 11 C 0.185 3.815 12 O -0.197 6.197 13 C -0.387 4.387 14 H 0.113 0.887 15 C 0.066 3.934 16 N -0.863 5.863 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.256 1.256 21 C -0.237 4.237 22 C -0.003 4.003 23 C -0.084 4.084 24 N -0.490 5.490 25 C 0.197 3.803 26 N -0.550 5.550 27 C 0.226 3.774 28 N -0.554 5.554 29 H 0.415 0.585 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.422 0.578 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.284 0.716 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.964 -20.367 2.664 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.289 3.711 3 O -0.299 6.299 4 N -0.308 5.308 5 C 0.257 3.743 6 N -0.232 5.232 7 C 0.246 3.754 8 C -0.180 4.180 9 C -0.024 4.024 10 C -0.222 4.222 11 C 0.129 3.871 12 O -0.098 6.098 13 C -0.462 4.462 14 H 0.130 0.870 15 C -0.140 4.140 16 N -0.499 5.499 17 Si 0.731 3.269 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.180 1.180 21 C -0.256 4.256 22 C -0.023 4.023 23 C -0.219 4.219 24 N -0.209 5.209 25 C -0.094 4.094 26 N -0.276 5.276 27 C -0.026 4.026 28 N -0.168 5.168 29 H 0.252 0.748 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.260 0.740 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.094 0.906 37 H 0.157 0.843 38 H 0.140 0.860 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -14.133 -18.689 2.674 23.583 hybrid contribution -0.033 -1.384 0.143 1.392 sum -14.165 -20.073 2.817 24.729 Atomic orbital electron populations 1.21912 0.88780 1.05926 1.05762 1.21299 0.90892 0.82355 0.76537 1.90988 1.69253 1.29535 1.40087 1.43576 1.01752 1.12867 1.72563 1.19169 0.85137 0.81449 0.88549 1.68857 1.09153 1.18440 1.26721 1.19856 0.85689 0.92342 0.77469 1.17828 0.97219 0.90105 1.12866 1.20820 0.91318 0.96168 0.94105 1.20114 1.02334 0.91275 1.08525 1.19398 0.90540 0.85842 0.91326 1.83511 1.41342 1.14240 1.70725 1.20951 1.03791 0.83548 1.37865 0.86993 1.24559 0.99730 0.93613 0.96071 1.69620 1.38210 0.99699 1.42338 0.86150 0.82140 0.78122 0.80450 1.19540 1.20521 1.18008 1.21181 0.97323 0.98607 1.08515 1.20934 0.97169 0.90474 0.93683 1.20622 0.93028 0.92441 1.15808 1.70668 1.14991 1.15654 1.19637 1.25058 0.94720 0.88226 1.01428 1.70126 0.99186 1.32154 1.26172 1.19819 0.82300 0.94475 1.06054 1.41320 1.06019 1.08731 1.60772 0.74755 0.87851 0.89677 0.87564 0.74039 0.85269 0.85695 0.90590 0.84326 0.86005 0.78504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.37 10.31 36.01 0.37 0.00 16 2 C 0.50 3.74 7.89 -10.99 -0.09 3.65 16 3 O -0.44 -5.90 15.27 5.58 0.09 -5.82 16 4 N -0.65 -3.63 5.35 -12.95 -0.07 -3.70 16 5 C 0.61 6.47 8.40 -321.50 -2.70 3.76 16 6 N -0.50 -7.73 7.37 -10.07 -0.07 -7.80 16 7 C 0.38 6.77 6.53 -82.35 -0.54 6.23 16 8 C -0.18 -3.44 5.75 -104.89 -0.60 -4.05 16 9 C 0.00 -0.09 9.22 -39.22 -0.36 -0.45 16 10 C -0.20 -4.16 9.97 -39.46 -0.39 -4.56 16 11 C 0.18 4.25 6.66 -38.92 -0.26 3.99 16 12 O -0.20 -5.05 8.58 0.63 0.01 -5.04 16 13 C -0.39 -10.54 9.94 30.91 0.31 -10.24 16 14 H 0.11 3.11 5.42 -52.49 -0.28 2.83 16 15 C 0.07 1.79 5.49 -17.51 -0.10 1.69 16 16 N -0.86 -24.01 13.96 55.48 0.77 -23.24 16 17 Si 0.91 20.93 28.62 -169.99 -4.86 16.06 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 21 C -0.24 -5.18 9.15 -39.46 -0.36 -5.54 16 22 C 0.00 -0.07 9.59 -39.22 -0.38 -0.44 16 23 C -0.08 -1.51 6.63 -84.64 -0.56 -2.07 16 24 N -0.49 -9.11 10.22 -12.30 -0.13 -9.23 16 25 C 0.20 3.21 12.89 -91.36 -1.18 2.04 16 26 N -0.55 -8.94 11.32 -13.47 -0.15 -9.09 16 27 C 0.23 3.46 8.54 -155.38 -1.33 2.13 16 28 N -0.55 -5.52 5.38 -12.81 -0.07 -5.59 16 29 H 0.41 2.25 8.83 -40.82 -0.36 1.89 16 30 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.42 0.08 8.72 -40.82 -0.36 -0.28 16 34 H 0.13 2.39 7.00 -52.49 -0.37 2.02 16 35 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 36 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.14 3.11 5.62 -52.48 -0.29 2.81 16 38 H 0.12 2.27 7.97 -52.48 -0.42 1.85 16 39 H 0.20 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -37.28 346.74 -10.76 -48.04 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -3.33 Total: 4.04 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -8.16 Total: -3.85 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.28 Total: -58.65 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.86 Total: 16.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.28 -10.76 -48.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.400 kcal (2) G-P(sol) polarization free energy of solvation -37.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds