Wall clock time and date at job start Tue Mar 31 2020 23:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47332 * 2 1 4 4 C 1.52996 * 109.46935 * 120.00054 * 2 1 3 5 5 N 1.46505 * 109.47042 * 174.99924 * 4 2 1 6 6 C 1.34771 * 120.00003 * 179.97438 * 5 4 2 7 7 O 1.21568 * 120.00339 * 0.02562 * 6 5 4 8 8 C 1.47769 * 120.00129 * 179.97438 * 6 5 4 9 9 C 1.39626 * 120.15524 * 0.02562 * 8 6 5 10 10 C 1.37895 * 119.86699 * 180.02562 * 9 8 6 11 11 C 1.38415 * 120.18527 * 0.02562 * 10 9 8 12 12 C 1.38275 * 120.31642 * 359.97438 * 11 10 9 13 13 C 1.38155 * 120.12912 * 359.97438 * 12 11 10 14 14 Cl 1.73600 * 120.09304 * 179.97438 * 13 12 11 15 15 N 1.46904 * 109.46932 * 239.99645 * 2 1 3 16 16 C 1.46903 * 110.99881 * 85.00077 * 15 2 1 17 17 C 1.50694 * 109.46826 * 180.02562 * 16 15 2 18 18 O 1.21292 * 120.00603 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99685 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99999 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00015 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00016 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99780 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00118 * 0.02562 * 22 20 19 25 25 H 1.48508 * 109.47150 * 89.99990 * 24 22 20 26 26 H 1.48495 * 109.47337 * 209.99933 * 24 22 20 27 27 H 1.48500 * 109.47303 * 330.00200 * 24 22 20 28 28 H 1.09005 * 109.47517 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47263 * 299.99953 * 1 2 3 30 30 H 1.09005 * 109.47450 * 60.00229 * 1 2 3 31 31 H 1.08996 * 109.47837 * 54.99603 * 4 2 1 32 32 H 1.09001 * 109.46914 * 294.99531 * 4 2 1 33 33 H 0.96996 * 119.99977 * 359.97438 * 5 4 2 34 34 H 1.08000 * 120.06524 * 359.97438 * 9 8 6 35 35 H 1.08004 * 119.90619 * 180.02562 * 10 9 8 36 36 H 1.08002 * 119.84504 * 180.02562 * 11 10 9 37 37 H 1.07994 * 119.93483 * 179.72697 * 12 11 10 38 38 H 1.00901 * 111.00187 * 321.04904 * 15 2 1 39 39 H 1.09001 * 109.47056 * 299.99796 * 16 15 2 40 40 H 1.09000 * 109.46761 * 59.99951 * 16 15 2 41 41 H 0.97000 * 119.99860 * 0.02562 * 19 17 16 42 42 H 0.96998 * 119.99505 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4283 2.1911 7 8 3.5685 -1.8844 3.1422 8 6 5.6456 -1.5349 2.1317 9 6 6.3432 -1.0127 1.0407 10 6 7.7174 -1.1159 0.9912 11 6 8.4063 -1.7359 2.0192 12 6 7.7231 -2.2557 3.1032 13 6 6.3465 -2.1586 3.1668 14 17 5.4897 -2.8121 4.5279 15 7 2.0196 -0.6926 -1.1994 16 6 2.0824 0.2225 -2.3470 17 6 2.5872 -0.5220 -3.5560 18 8 2.8667 -1.6992 -3.4704 19 7 2.7271 0.1200 -4.7328 20 6 3.1868 -0.5572 -5.8326 21 1 3.4365 -1.6051 -5.7562 22 6 3.3316 0.1048 -7.0457 23 7 3.7718 -0.5444 -8.1000 24 14 2.9005 1.9175 -7.1777 25 1 4.1015 2.7356 -6.8715 26 1 2.4361 2.2168 -8.5561 27 1 1.8212 2.2415 -6.2105 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6053 -1.7198 1.2953 32 1 1.7516 -0.1582 2.1369 33 1 3.9823 -0.4629 0.4316 34 1 5.8075 -0.5296 0.2369 35 1 8.2577 -0.7118 0.1478 36 1 9.4826 -1.8133 1.9749 37 1 8.2664 -2.7421 3.8998 38 1 1.4495 -1.4980 -1.4100 39 1 1.0870 0.6162 -2.5526 40 1 2.7588 1.0460 -2.1183 41 1 2.5032 1.0613 -4.8013 42 1 3.8732 -0.0822 -8.9467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266987146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:19 Heat of formation + Delta-G solvation = -40.049455 kcal Electronic energy + Delta-G solvation = -26204.938123 eV Core-core repulsion = 22211.167732 eV Total energy + Delta-G solvation = -3993.770390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.31410 -38.84605 -38.38870 -36.99466 -36.46152 -34.24827 -33.85819 -31.87606 -31.66750 -30.93122 -30.63332 -26.77021 -26.39211 -23.99833 -23.63635 -22.73273 -21.11393 -20.49424 -19.47218 -18.53735 -18.18214 -16.57530 -16.47953 -16.07658 -15.71995 -15.33260 -15.14164 -15.00822 -14.87931 -14.67414 -14.26666 -14.01258 -13.59683 -13.41506 -13.29013 -13.06278 -12.71815 -12.50508 -12.43690 -12.19683 -12.15509 -11.85818 -11.72738 -11.62485 -11.57772 -11.22019 -11.18811 -11.08282 -10.64908 -10.02902 -9.62975 -9.56807 -9.38218 -9.07037 -8.88455 -8.68600 -8.28526 -8.22649 -6.36294 -3.88077 0.52078 0.91382 2.02788 2.75234 2.97189 3.01656 3.10607 3.11602 3.57133 3.67030 3.96823 4.05305 4.43363 4.48926 4.66367 4.68145 4.77257 4.91320 4.97377 5.03227 5.10502 5.17065 5.24995 5.40850 5.46445 5.50400 5.54714 5.64020 5.73538 5.80961 5.84416 5.87134 5.89673 5.96990 6.07428 6.38835 6.45196 6.96376 7.44567 7.52272 7.54616 8.08883 8.22193 8.53831 8.89600 9.36716 9.76379 10.76770 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013130 B = 0.002604 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.026999 B =10751.739982 C =12300.869465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.136 3.864 5 N -0.707 5.707 6 C 0.551 3.449 7 O -0.525 6.525 8 C -0.128 4.128 9 C -0.070 4.070 10 C -0.123 4.123 11 C -0.085 4.085 12 C -0.125 4.125 13 C 0.012 3.988 14 Cl -0.036 7.036 15 N -0.664 5.664 16 C 0.046 3.954 17 C 0.448 3.552 18 O -0.563 6.563 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.407 0.593 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.356 0.644 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.370 0.630 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.334 4.855 21.398 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.011 3.989 5 N -0.359 5.359 6 C 0.337 3.663 7 O -0.403 6.403 8 C -0.131 4.131 9 C -0.088 4.088 10 C -0.141 4.141 11 C -0.103 4.103 12 C -0.144 4.144 13 C -0.016 4.016 14 Cl -0.006 7.006 15 N -0.297 5.297 16 C -0.086 4.086 17 C 0.233 3.767 18 O -0.445 6.445 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.244 0.756 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.176 0.824 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.203 0.797 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.699 3.739 22.170 22.785 hybrid contribution -1.077 1.702 -1.000 2.248 sum 2.622 5.440 21.171 22.015 Atomic orbital electron populations 1.22432 0.96113 1.02868 1.02614 1.21867 0.93492 0.98278 0.90691 0.89772 1.21330 0.79817 1.01107 0.96602 1.45699 1.07795 1.59248 1.23184 1.18062 0.86600 0.78734 0.82923 1.90849 1.69530 1.47069 1.32827 1.19838 0.94072 1.03348 0.95888 1.21428 0.94734 0.96590 0.96096 1.21268 0.94094 0.99484 0.99247 1.21338 1.00523 0.95685 0.92767 1.21075 0.91749 1.01651 0.99910 1.21044 0.92409 0.97735 0.90408 1.98411 1.77145 1.83599 1.41466 1.60185 1.57919 1.09183 1.02429 1.21761 1.00140 0.95747 0.90998 1.19700 0.84900 0.88279 0.83780 1.90584 1.53778 1.15916 1.84242 1.42213 1.60050 1.11116 1.09546 1.19425 1.40205 0.98015 0.85799 0.86283 1.25046 0.97452 0.98409 0.95243 1.69623 1.44988 1.36549 1.00855 0.86670 0.78974 0.85128 0.78570 1.19593 1.20190 1.19559 0.91845 0.91766 0.91981 0.91311 0.91199 0.75571 0.84353 0.84539 0.84671 0.84465 0.82385 0.93553 0.89526 0.79721 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.16 37.16 0.34 -1.21 16 2 C 0.07 0.66 2.75 -67.71 -0.19 0.48 16 3 H 0.08 0.75 7.80 -51.93 -0.41 0.34 16 4 C 0.14 1.47 5.37 -4.04 -0.02 1.45 16 5 N -0.71 -8.35 5.34 -61.27 -0.33 -8.68 16 6 C 0.55 7.54 7.77 -12.37 -0.10 7.44 16 7 O -0.53 -8.49 13.97 5.31 0.07 -8.42 16 8 C -0.13 -1.56 5.88 -104.94 -0.62 -2.18 16 9 C -0.07 -0.71 9.54 -39.19 -0.37 -1.09 16 10 C -0.12 -1.07 10.03 -39.64 -0.40 -1.46 16 11 C -0.08 -0.67 10.04 -39.50 -0.40 -1.07 16 12 C -0.13 -1.15 9.82 -39.60 -0.39 -1.53 16 13 C 0.01 0.14 6.35 -39.07 -0.25 -0.11 16 14 Cl -0.04 -0.45 26.02 -51.86 -1.35 -1.80 16 15 N -0.66 -8.77 5.32 -107.99 -0.57 -9.34 16 16 C 0.05 0.67 5.97 -4.98 -0.03 0.64 16 17 C 0.45 9.43 7.82 -10.99 -0.09 9.35 16 18 O -0.56 -14.32 15.78 5.55 0.09 -14.24 16 19 N -0.59 -13.30 5.09 -10.97 -0.06 -13.35 16 20 C -0.31 -8.36 10.16 -14.93 -0.15 -8.52 16 21 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.18 13.96 55.50 0.77 -24.41 16 24 Si 0.88 18.70 27.74 -169.99 -4.71 13.99 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.41 4.51 6.17 -40.82 -0.25 4.26 16 34 H 0.14 1.27 6.41 -52.49 -0.34 0.94 16 35 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.36 5.19 8.17 -39.29 -0.32 4.87 16 39 H 0.05 0.59 7.44 -51.93 -0.39 0.21 16 40 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 41 H 0.37 7.28 5.76 -40.82 -0.24 7.05 16 42 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -33.64 369.76 -8.52 -42.16 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -5.26 Total: 15.32 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -2.75 Total: 3.20 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.18 Total: -55.78 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.16 Total: -22.66 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.71 Total: 13.99 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.35 Total: -1.80 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.64 -8.52 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266987146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.110 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds