Wall clock time and date at job start Tue Mar 31 2020 23:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46972 * 2 1 4 4 C 1.52993 * 109.47061 * 120.00047 * 2 1 3 5 5 N 1.46504 * 109.47202 * 294.99780 * 4 2 1 6 6 C 1.36934 * 120.00150 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00148 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00222 * 179.73095 * 6 5 4 9 9 N 1.31614 * 120.00470 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99691 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46947 * 90.00418 * 10 8 6 12 12 H 1.48503 * 109.47241 * 210.00064 * 10 8 6 13 13 H 1.48496 * 109.47133 * 330.00480 * 10 8 6 14 14 C 1.53006 * 109.47200 * 240.00145 * 2 1 3 15 15 N 1.46494 * 109.47099 * 65.00144 * 14 2 1 16 16 C 1.34779 * 119.99878 * 180.02562 * 15 14 2 17 17 O 1.21353 * 120.00021 * 359.97438 * 16 15 14 18 18 C 1.49347 * 119.99863 * 179.97438 * 16 15 14 19 19 O 1.21375 * 120.00286 * 0.02562 * 18 16 15 20 20 N 1.34780 * 119.99877 * 179.97438 * 18 16 15 21 21 C 1.39766 * 120.00134 * 175.37937 * 20 18 16 22 22 C 1.38928 * 120.06322 * 214.82480 * 21 20 18 23 23 C 1.38087 * 119.93173 * 179.76477 * 22 21 20 24 24 C 1.38400 * 120.06768 * 0.48883 * 23 22 21 25 25 Cl 1.73594 * 119.93972 * 179.74389 * 24 23 22 26 26 C 1.38400 * 120.12249 * 359.76622 * 24 23 22 27 27 C 1.38087 * 120.06485 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.46834 * 60.00373 * 1 2 3 29 29 H 1.09002 * 109.46617 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47350 * 300.00122 * 1 2 3 31 31 H 1.09000 * 109.47304 * 175.00421 * 4 2 1 32 32 H 1.08994 * 109.47664 * 54.99998 * 4 2 1 33 33 H 0.96994 * 119.99805 * 0.02562 * 5 4 2 34 34 H 0.96999 * 120.00397 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46812 * 184.99787 * 14 2 1 36 36 H 1.08998 * 109.46489 * 304.99740 * 14 2 1 37 37 H 0.97002 * 120.00215 * 359.97438 * 15 14 2 38 38 H 0.97004 * 119.99879 * 355.38697 * 20 18 16 39 39 H 1.07995 * 120.02938 * 359.97438 * 22 21 20 40 40 H 1.08003 * 119.96328 * 180.23091 * 23 22 21 41 41 H 1.07996 * 119.96732 * 179.97438 * 26 24 23 42 42 H 1.08001 * 120.03367 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 0.0354 2.4424 6 6 2.0011 -0.4207 3.6855 7 1 2.5621 -1.3381 3.7865 8 6 1.6387 0.2991 4.8158 9 7 1.9742 -0.1391 6.0107 10 14 0.6762 1.8904 4.6408 11 1 -0.7788 1.5942 4.6670 12 1 1.0162 2.8007 5.7637 13 1 1.0257 2.5412 3.3526 14 6 2.0401 -0.7212 -1.2493 15 7 1.6526 0.0354 -2.4424 16 6 1.9957 -0.4136 -3.6660 17 8 2.6261 -1.4443 -3.7793 18 6 1.6002 0.3575 -4.8823 19 8 0.9701 1.3887 -4.7689 20 7 1.9438 -0.0912 -6.1059 21 6 1.4921 0.5768 -7.2475 22 6 1.1823 -0.1401 -8.3965 23 6 0.7317 0.5222 -9.5213 24 6 0.5981 1.8997 -9.5080 25 17 0.0376 2.7295 -10.9260 26 6 0.9111 2.6169 -8.3665 27 6 1.3581 1.9596 -7.2373 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.1263 -0.7994 1.2056 32 1 1.6055 -1.7197 1.2952 33 1 1.1483 0.8591 2.3518 34 1 1.7213 0.3641 6.8004 35 1 3.1264 -0.7994 -1.2056 36 1 1.6055 -1.7198 -1.2951 37 1 1.1484 0.8591 -2.3518 38 1 2.5045 -0.8778 -6.1942 39 1 1.2906 -1.2145 -8.4088 40 1 0.4871 -0.0350 -10.4136 41 1 0.8063 3.6917 -8.3590 42 1 1.6025 2.5198 -6.3469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267992384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:05 Heat of formation + Delta-G solvation = -36.184285 kcal Electronic energy + Delta-G solvation = -25326.930800 eV Core-core repulsion = 21333.328016 eV Total energy + Delta-G solvation = -3993.602784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.52041 -39.94168 -38.71212 -37.21088 -36.98245 -35.46038 -34.54130 -32.60391 -31.65479 -30.63684 -30.14106 -27.26112 -26.17304 -24.70437 -23.63893 -22.59901 -21.84447 -20.83372 -20.29776 -19.16391 -18.13097 -17.56389 -17.35073 -16.68203 -16.47925 -16.08718 -15.49836 -15.19710 -14.84386 -14.61424 -14.31308 -14.23427 -14.05367 -13.90557 -13.76599 -13.27598 -12.96368 -12.75606 -12.56237 -12.44725 -12.27753 -12.09755 -11.93690 -11.50953 -11.33654 -11.13761 -10.85350 -10.74764 -10.71871 -10.64297 -10.17196 -10.00695 -9.61955 -9.59808 -9.45941 -8.94011 -8.70066 -7.27652 -5.80001 -3.16128 0.36029 0.73389 1.08483 1.63788 1.86631 2.73034 3.10353 3.16430 3.33976 3.36210 3.42575 4.00013 4.23380 4.31854 4.55602 4.66273 4.70307 4.77256 4.87657 4.96192 5.13385 5.30674 5.41178 5.48917 5.55436 5.60815 5.64342 5.68366 5.70012 5.73556 5.74474 5.90663 6.06701 6.17015 6.23231 6.38497 6.46590 6.57356 6.66622 6.92645 7.23987 7.58161 7.95669 8.38660 9.17349 9.89436 10.08650 11.38289 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.001644 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.546476 B =17032.529201 C =17833.645749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 H 0.079 0.921 4 C 0.166 3.834 5 N -0.754 5.754 6 C -0.246 4.246 7 H 0.091 0.909 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.884 3.116 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.124 3.876 15 N -0.689 5.689 16 C 0.507 3.493 17 O -0.517 6.517 18 C 0.510 3.490 19 O -0.496 6.496 20 N -0.646 5.646 21 C 0.146 3.854 22 C -0.127 4.127 23 C -0.091 4.091 24 C -0.048 4.048 25 Cl -0.070 7.070 26 C -0.090 4.090 27 C -0.108 4.108 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.414 0.586 38 H 0.426 0.574 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 2.532 -35.258 35.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 H 0.097 0.903 4 C 0.038 3.962 5 N -0.400 5.400 6 C -0.376 4.376 7 H 0.109 0.891 8 C -0.191 4.191 9 N -0.581 5.581 10 Si 0.714 3.286 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.001 3.999 15 N -0.341 5.341 16 C 0.286 3.714 17 O -0.394 6.394 18 C 0.293 3.707 19 O -0.370 6.370 20 N -0.294 5.294 21 C 0.052 3.948 22 C -0.147 4.147 23 C -0.110 4.110 24 C -0.075 4.075 25 Cl -0.041 7.041 26 C -0.110 4.110 27 C -0.128 4.128 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.250 0.750 38 H 0.264 0.736 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.168 2.423 -35.085 35.236 hybrid contribution -0.729 1.223 -0.065 1.426 sum -2.897 3.647 -35.150 35.457 Atomic orbital electron populations 1.21842 0.94543 1.02426 1.01539 1.21640 0.96873 1.00766 0.94280 0.90258 1.20540 0.97240 0.94247 0.84191 1.42672 1.67907 1.27111 1.02300 1.19054 1.29819 1.07015 0.81703 0.89144 1.24670 1.00740 0.98555 0.95097 1.69695 1.51247 1.40179 0.96958 0.86562 0.80408 0.84672 0.76953 1.21026 1.21680 1.20373 1.21626 1.00903 0.95425 0.81979 1.45879 1.55247 1.27954 1.05047 1.19688 0.81464 0.85719 0.84485 1.90802 1.38781 1.23384 1.86400 1.20469 0.79921 0.85638 0.84704 1.90787 1.37341 1.22545 1.86282 1.43144 1.50738 1.31938 1.03531 1.17820 0.98860 0.91616 0.86514 1.20913 1.01358 1.00337 0.92131 1.20857 0.99121 0.92183 0.98854 1.20977 1.04238 0.92937 0.89378 1.98380 1.87923 1.78595 1.39231 1.21003 0.98346 1.00761 0.90843 1.21309 0.99851 0.92553 0.99074 0.93469 0.92207 0.91613 0.95182 0.95000 0.80590 0.93018 0.90252 0.90278 0.74967 0.73561 0.84296 0.84284 0.84329 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.94 37.16 0.33 -1.54 16 2 C -0.12 -1.55 2.46 -90.62 -0.22 -1.77 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.17 2.96 5.65 -4.04 -0.02 2.93 16 5 N -0.75 -17.20 5.13 -59.91 -0.31 -17.51 16 6 C -0.25 -6.86 10.47 -15.06 -0.16 -7.01 16 7 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 8 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 9 N -0.93 -29.07 13.97 55.49 0.78 -28.29 16 10 Si 0.88 21.74 27.73 -169.99 -4.71 17.02 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 14 C 0.12 1.41 5.06 -4.04 -0.02 1.39 16 15 N -0.69 -7.06 5.28 -60.77 -0.32 -7.38 16 16 C 0.51 5.40 7.89 -11.63 -0.09 5.31 16 17 O -0.52 -6.50 16.48 5.49 0.09 -6.41 16 18 C 0.51 4.92 7.73 -11.63 -0.09 4.83 16 19 O -0.50 -5.58 13.91 5.47 0.08 -5.50 16 20 N -0.65 -4.89 5.32 -10.29 -0.05 -4.94 16 21 C 0.15 1.12 6.30 -83.73 -0.53 0.59 16 22 C -0.13 -0.75 9.97 -39.38 -0.39 -1.14 16 23 C -0.09 -0.54 9.82 -39.58 -0.39 -0.93 16 24 C -0.05 -0.34 6.32 -39.46 -0.25 -0.59 16 25 Cl -0.07 -0.48 28.95 -51.86 -1.50 -1.98 16 26 C -0.09 -0.66 9.82 -39.58 -0.39 -1.05 16 27 C -0.11 -0.89 8.70 -39.38 -0.34 -1.23 16 28 H 0.05 0.50 7.18 -51.93 -0.37 0.13 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.97 7.18 -51.94 -0.37 0.60 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.36 8.00 4.71 -40.82 -0.19 7.81 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.41 3.86 7.12 -40.82 -0.29 3.57 16 38 H 0.43 2.48 8.30 -40.82 -0.34 2.15 16 39 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.15 1.34 6.22 -52.49 -0.33 1.01 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -32.87 372.25 -8.30 -41.17 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.29 Total: 8.39 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.66 Total: -0.16 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.09 Total: -58.13 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.17 Total: -11.91 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.87 -8.30 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267992384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.986 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds