Wall clock time and date at job start Tue Mar 31 2020 23:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46972 * 2 1 4 4 C 1.52993 * 109.47061 * 120.00047 * 2 1 3 5 5 N 1.46504 * 109.47202 * 294.99780 * 4 2 1 6 6 C 1.36934 * 120.00150 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00148 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00222 * 179.73095 * 6 5 4 9 9 N 1.31614 * 120.00470 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99691 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46947 * 90.00418 * 10 8 6 12 12 H 1.48503 * 109.47241 * 210.00064 * 10 8 6 13 13 H 1.48496 * 109.47133 * 330.00480 * 10 8 6 14 14 C 1.53006 * 109.47200 * 240.00145 * 2 1 3 15 15 N 1.46494 * 109.47099 * 65.00144 * 14 2 1 16 16 C 1.34779 * 119.99878 * 180.02562 * 15 14 2 17 17 O 1.21353 * 120.00021 * 359.97438 * 16 15 14 18 18 C 1.49347 * 119.99863 * 179.97438 * 16 15 14 19 19 O 1.21375 * 120.00286 * 0.02562 * 18 16 15 20 20 N 1.34780 * 119.99877 * 179.97438 * 18 16 15 21 21 C 1.39766 * 120.00134 * 175.37937 * 20 18 16 22 22 C 1.38928 * 120.06322 * 214.82480 * 21 20 18 23 23 C 1.38087 * 119.93173 * 179.76477 * 22 21 20 24 24 C 1.38400 * 120.06768 * 0.48883 * 23 22 21 25 25 Cl 1.73594 * 119.93972 * 179.74389 * 24 23 22 26 26 C 1.38400 * 120.12249 * 359.76622 * 24 23 22 27 27 C 1.38087 * 120.06485 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.46834 * 60.00373 * 1 2 3 29 29 H 1.09002 * 109.46617 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47350 * 300.00122 * 1 2 3 31 31 H 1.09000 * 109.47304 * 175.00421 * 4 2 1 32 32 H 1.08994 * 109.47664 * 54.99998 * 4 2 1 33 33 H 0.96994 * 119.99805 * 0.02562 * 5 4 2 34 34 H 0.96999 * 120.00397 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46812 * 184.99787 * 14 2 1 36 36 H 1.08998 * 109.46489 * 304.99740 * 14 2 1 37 37 H 0.97002 * 120.00215 * 359.97438 * 15 14 2 38 38 H 0.97004 * 119.99879 * 355.38697 * 20 18 16 39 39 H 1.07995 * 120.02938 * 359.97438 * 22 21 20 40 40 H 1.08003 * 119.96328 * 180.23091 * 23 22 21 41 41 H 1.07996 * 119.96732 * 179.97438 * 26 24 23 42 42 H 1.08001 * 120.03367 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 0.0354 2.4424 6 6 2.0011 -0.4207 3.6855 7 1 2.5621 -1.3381 3.7865 8 6 1.6387 0.2991 4.8158 9 7 1.9742 -0.1391 6.0107 10 14 0.6762 1.8904 4.6408 11 1 -0.7788 1.5942 4.6670 12 1 1.0162 2.8007 5.7637 13 1 1.0257 2.5412 3.3526 14 6 2.0401 -0.7212 -1.2493 15 7 1.6526 0.0354 -2.4424 16 6 1.9957 -0.4136 -3.6660 17 8 2.6261 -1.4443 -3.7793 18 6 1.6002 0.3575 -4.8823 19 8 0.9701 1.3887 -4.7689 20 7 1.9438 -0.0912 -6.1059 21 6 1.4921 0.5768 -7.2475 22 6 1.1823 -0.1401 -8.3965 23 6 0.7317 0.5222 -9.5213 24 6 0.5981 1.8997 -9.5080 25 17 0.0376 2.7295 -10.9260 26 6 0.9111 2.6169 -8.3665 27 6 1.3581 1.9596 -7.2373 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.1263 -0.7994 1.2056 32 1 1.6055 -1.7197 1.2952 33 1 1.1483 0.8591 2.3518 34 1 1.7213 0.3641 6.8004 35 1 3.1264 -0.7994 -1.2056 36 1 1.6055 -1.7198 -1.2951 37 1 1.1484 0.8591 -2.3518 38 1 2.5045 -0.8778 -6.1942 39 1 1.2906 -1.2145 -8.4088 40 1 0.4871 -0.0350 -10.4136 41 1 0.8063 3.6917 -8.3590 42 1 1.6025 2.5198 -6.3469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267992384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:04 Heat of formation + Delta-G solvation = -59.035182 kcal Electronic energy + Delta-G solvation = -25327.921689 eV Core-core repulsion = 21333.328016 eV Total energy + Delta-G solvation = -3994.593673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.24020 -40.65603 -39.42291 -38.39898 -37.54315 -36.39706 -35.71311 -34.17378 -32.42601 -32.15067 -30.73876 -28.18479 -27.64528 -25.72486 -24.24725 -23.86910 -22.89365 -21.74481 -21.33824 -20.13376 -19.39688 -18.70690 -18.03251 -17.44453 -17.25583 -17.02839 -16.47311 -16.27157 -16.01664 -15.60046 -15.46107 -15.12626 -15.08142 -14.84843 -14.55624 -14.47757 -14.18810 -13.82871 -13.65229 -13.50989 -13.21840 -13.00884 -12.88063 -12.79705 -12.53440 -12.28824 -12.09854 -12.00315 -11.86011 -11.77267 -11.68742 -11.32902 -10.97730 -10.83699 -10.34355 -10.10909 -9.28885 -9.26239 -8.02211 -5.35819 -0.25818 0.23441 0.37738 1.05154 1.18953 1.38059 1.41949 1.49240 1.95946 2.42984 2.48891 2.57428 3.22710 3.29425 3.51517 3.75808 3.85237 3.91512 3.99073 4.09300 4.16107 4.26369 4.36994 4.49836 4.66587 4.70224 4.79522 4.91244 4.93763 5.00189 5.04983 5.09059 5.12682 5.17661 5.19785 5.30320 5.42770 5.67145 5.76524 5.81128 6.18906 6.21494 6.55143 6.77920 7.08819 7.84538 8.03651 9.19261 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.001644 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.546476 B =17032.529201 C =17833.645749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 H 0.086 0.914 4 C 0.159 3.841 5 N -0.755 5.755 6 C -0.236 4.236 7 H 0.056 0.944 8 C -0.064 4.064 9 N -0.984 5.984 10 Si 0.955 3.045 11 H -0.277 1.277 12 H -0.297 1.297 13 H -0.249 1.249 14 C 0.133 3.867 15 N -0.682 5.682 16 C 0.511 3.489 17 O -0.537 6.537 18 C 0.515 3.485 19 O -0.515 6.515 20 N -0.634 5.634 21 C 0.131 3.869 22 C -0.119 4.119 23 C -0.090 4.090 24 C -0.055 4.055 25 Cl -0.070 7.070 26 C -0.097 4.097 27 C -0.121 4.121 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.028 0.972 32 H 0.030 0.970 33 H 0.367 0.633 34 H 0.258 0.742 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.420 0.580 38 H 0.434 0.566 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.146 0.854 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 3.209 -38.076 38.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.104 0.896 4 C 0.033 3.967 5 N -0.401 5.401 6 C -0.367 4.367 7 H 0.074 0.926 8 C -0.256 4.256 9 N -0.635 5.635 10 Si 0.782 3.218 11 H -0.203 1.203 12 H -0.224 1.224 13 H -0.173 1.173 14 C 0.010 3.990 15 N -0.335 5.335 16 C 0.291 3.709 17 O -0.415 6.415 18 C 0.297 3.703 19 O -0.390 6.390 20 N -0.281 5.281 21 C 0.037 3.963 22 C -0.139 4.139 23 C -0.109 4.109 24 C -0.083 4.083 25 Cl -0.042 7.042 26 C -0.116 4.116 27 C -0.141 4.141 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.201 0.799 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.258 0.742 38 H 0.274 0.726 39 H 0.183 0.817 40 H 0.178 0.822 41 H 0.164 0.836 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.083 3.095 -37.985 38.235 hybrid contribution -0.387 0.907 0.718 1.220 sum -3.470 4.002 -37.266 37.641 Atomic orbital electron populations 1.21834 0.93836 1.02606 1.01964 1.21428 0.97291 1.00583 0.92754 0.89585 1.20714 0.97221 0.94266 0.84519 1.42651 1.67836 1.27687 1.01973 1.19051 1.28156 1.05581 0.83953 0.92568 1.25523 1.02674 1.02758 0.94623 1.69886 1.53501 1.42145 0.97944 0.85417 0.78776 0.79824 0.77826 1.20306 1.22425 1.17311 1.21409 1.00781 0.95275 0.81569 1.45754 1.55120 1.28011 1.04644 1.19815 0.80910 0.85396 0.84760 1.90797 1.39717 1.24281 1.86695 1.20224 0.79906 0.85304 0.84911 1.90789 1.38451 1.23238 1.86487 1.43046 1.50205 1.31881 1.02965 1.17988 0.99734 0.91615 0.86981 1.21179 0.99994 1.01554 0.91147 1.21153 0.98286 0.91863 0.99621 1.21131 1.04300 0.93551 0.89270 1.98381 1.87918 1.78721 1.39132 1.21100 0.98412 1.01312 0.90809 1.21285 1.00731 0.93051 0.99042 0.90830 0.92228 0.93348 0.95365 0.95203 0.79906 0.93363 0.90339 0.90117 0.74210 0.72554 0.81743 0.82183 0.83605 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.94 71.98 0.64 -2.72 16 2 C -0.10 -2.49 2.46 -10.79 -0.03 -2.51 16 3 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 4 C 0.16 5.54 5.65 86.38 0.49 6.03 16 5 N -0.76 -33.78 5.13 -343.46 -1.76 -35.54 16 6 C -0.24 -13.33 10.47 84.03 0.88 -12.45 16 7 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 8 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 9 N -0.98 -62.91 13.97 21.65 0.30 -62.61 16 10 Si 0.95 44.62 27.73 68.60 1.90 46.52 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 13 H -0.25 -10.31 6.52 99.48 0.65 -9.67 16 14 C 0.13 2.77 5.06 86.38 0.44 3.20 16 15 N -0.68 -12.53 5.28 -464.53 -2.45 -14.98 16 16 C 0.51 10.00 7.89 87.24 0.69 10.69 16 17 O -0.54 -12.62 16.48 -3.26 -0.05 -12.68 16 18 C 0.51 9.16 7.73 87.24 0.67 9.83 16 19 O -0.51 -10.94 13.91 -3.33 -0.05 -10.98 16 20 N -0.63 -8.53 5.32 -304.81 -1.62 -10.15 16 21 C 0.13 1.78 6.30 38.21 0.24 2.02 16 22 C -0.12 -1.11 9.97 22.40 0.22 -0.88 16 23 C -0.09 -0.86 9.82 22.27 0.22 -0.64 16 24 C -0.06 -0.69 6.32 22.35 0.14 -0.55 16 25 Cl -0.07 -0.87 28.95 -2.72 -0.08 -0.95 16 26 C -0.10 -1.33 9.82 22.27 0.22 -1.11 16 27 C -0.12 -1.89 8.70 22.40 0.19 -1.70 16 28 H 0.07 1.32 7.18 -2.39 -0.02 1.31 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.31 7.18 -2.39 -0.02 1.29 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.37 15.50 4.71 -92.71 -0.44 15.06 16 34 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.42 6.79 7.12 -92.71 -0.66 6.13 16 38 H 0.43 4.25 8.30 -92.71 -0.77 3.48 16 39 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 40 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 41 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.14 2.45 6.22 -2.91 -0.02 2.43 16 Total: -1.00 -71.47 372.25 0.84 -70.63 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -0.84 Total: 24.84 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 5.49 Total: 5.90 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -5.53 Total: -123.28 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.10 Total: -23.66 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.52 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -71.47 0.84 -70.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267992384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.594 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds