Wall clock time and date at job start Tue Mar 31 2020 23:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00299 * 2 1 4 4 C 1.53003 * 109.47333 * 269.99923 * 3 2 1 5 5 N 1.46898 * 109.47421 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99630 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.46633 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00391 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99787 * 179.97438 * 7 6 5 10 10 C 1.37092 * 119.99919 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99952 * 0.02562 * 10 9 7 12 12 C 1.38950 * 119.99941 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99975 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00280 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47213 * 89.99618 * 14 12 10 16 16 H 1.48500 * 109.47645 * 210.00026 * 14 12 10 17 17 H 1.48505 * 109.46897 * 330.00079 * 14 12 10 18 18 C 1.34780 * 120.00237 * 179.97438 * 2 1 3 19 19 O 1.21555 * 120.00503 * 184.30570 * 18 2 1 20 20 C 1.47785 * 119.99405 * 4.30285 * 18 2 1 21 21 C 1.39618 * 120.12864 * 148.05890 * 20 18 2 22 22 C 1.37893 * 119.86547 * 180.30247 * 21 20 18 23 23 C 1.38511 * 120.13233 * 359.43567 * 22 21 20 24 24 Cl 1.73596 * 119.86775 * 180.26128 * 23 22 21 25 25 C 1.38514 * 120.26233 * 0.56193 * 23 22 21 26 26 C 1.37886 * 120.13462 * 359.72117 * 25 23 22 27 27 H 1.08996 * 109.47280 * 274.53646 * 1 2 3 28 28 H 1.09003 * 109.46862 * 34.53035 * 1 2 3 29 29 H 1.08998 * 109.47385 * 154.53192 * 1 2 3 30 30 H 1.09003 * 109.47410 * 29.99820 * 3 2 1 31 31 H 1.09004 * 109.47582 * 149.99964 * 3 2 1 32 32 H 1.09003 * 109.46788 * 300.00278 * 4 3 2 33 33 H 1.09004 * 109.46753 * 59.99533 * 4 3 2 34 34 H 1.00896 * 110.99700 * 56.04891 * 5 4 3 35 35 H 1.09004 * 109.47389 * 299.99618 * 6 5 4 36 36 H 1.08999 * 109.47763 * 60.00287 * 6 5 4 37 37 H 0.97006 * 120.00072 * 359.97438 * 9 7 6 38 38 H 0.97003 * 119.99680 * 180.02562 * 13 12 10 39 39 H 1.08001 * 120.06298 * 0.02562 * 21 20 18 40 40 H 1.08000 * 119.93101 * 179.72293 * 22 21 20 41 41 H 1.08002 * 119.93160 * 179.70186 * 25 23 22 42 42 H 1.07998 * 120.07072 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1866 2.9828 -1.4425 6 6 3.4493 3.4389 -2.8140 7 6 4.2026 4.7436 -2.7738 8 8 4.4918 5.2444 -1.7076 9 7 4.5550 5.3539 -3.9226 10 6 5.2399 6.5409 -3.8861 11 1 5.4973 6.9868 -2.9367 12 6 5.6036 7.1699 -5.0705 13 7 6.2597 8.3080 -5.0355 14 14 5.1590 6.3984 -6.7126 15 1 3.8286 6.8940 -7.1483 16 1 6.1806 6.7667 -7.7255 17 1 5.1142 4.9209 -6.5693 18 6 2.1389 -1.1672 0.0005 19 8 3.3519 -1.1687 0.0796 20 6 1.4030 -2.4452 -0.0949 21 6 1.9817 -3.5407 -0.7386 22 6 1.2877 -4.7288 -0.8300 23 6 0.0237 -4.8402 -0.2746 24 17 -0.8411 -6.3411 -0.3878 25 6 -0.5555 -3.7568 0.3652 26 6 0.1263 -2.5619 0.4579 27 1 -0.3633 0.0813 1.0244 28 1 -0.3633 0.8466 -0.5825 29 1 -0.3634 -0.9278 -0.4419 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1384 0.5138 32 1 3.0416 0.9506 -1.9563 33 1 1.5001 1.8407 -1.9563 34 1 4.0440 2.9056 -0.9163 35 1 4.0455 2.6916 -3.3376 36 1 2.5036 3.5810 -3.3372 37 1 4.3241 4.9532 -4.7754 38 1 6.5133 8.7473 -5.8623 39 1 2.9691 -3.4564 -1.1680 40 1 1.7326 -5.5755 -1.3316 41 1 -1.5434 -3.8482 0.7922 42 1 -0.3265 -1.7178 0.9567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493770301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:08 Heat of formation + Delta-G solvation = -47.821385 kcal Electronic energy + Delta-G solvation = -25403.015751 eV Core-core repulsion = 21408.908344 eV Total energy + Delta-G solvation = -3994.107406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64376 -40.33339 -39.59961 -37.61217 -37.45471 -36.37037 -35.80450 -33.76755 -32.70386 -32.14102 -30.60505 -28.27575 -27.59952 -25.77983 -24.34956 -23.85887 -23.00318 -21.35488 -20.85532 -20.24294 -18.53317 -18.06784 -17.90027 -17.46874 -17.18957 -16.69957 -16.56016 -16.14326 -15.78409 -15.62246 -15.38993 -15.05441 -14.80530 -14.73583 -14.51352 -14.47271 -14.12395 -14.03144 -13.85298 -13.47250 -13.40348 -13.00671 -12.91371 -12.79687 -12.55061 -12.42396 -12.31955 -12.09916 -11.98866 -11.77948 -11.52591 -11.08707 -10.49758 -10.26212 -10.13800 -9.89834 -9.73221 -9.45507 -8.42231 -6.03457 -0.37803 0.18926 1.03375 1.29836 1.35024 1.44034 1.54779 1.81391 1.93014 2.22319 2.57082 2.74127 3.13581 3.31809 3.47990 3.69908 3.79566 3.96771 4.07913 4.11142 4.12997 4.22640 4.29199 4.40011 4.46383 4.51705 4.53941 4.62866 4.75758 4.85223 4.90867 4.94510 4.99360 5.09683 5.18420 5.35911 5.51300 5.59338 5.84869 5.97678 6.22291 6.26178 6.57949 6.86281 6.97900 7.37636 7.93813 8.75323 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.001671 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.407789 B =16755.231722 C =17329.659630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.601 5.601 3 C 0.120 3.880 4 C 0.055 3.945 5 N -0.679 5.679 6 C 0.063 3.937 7 C 0.448 3.552 8 O -0.613 6.613 9 N -0.590 5.590 10 C -0.331 4.331 11 H 0.055 0.945 12 C -0.014 4.014 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.233 1.233 18 C 0.551 3.449 19 O -0.580 6.580 20 C -0.142 4.142 21 C -0.063 4.063 22 C -0.119 4.119 23 C -0.020 4.020 24 Cl -0.062 7.062 25 C -0.114 4.114 26 C -0.079 4.079 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.093 0.907 34 H 0.344 0.656 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.133 0.867 40 H 0.153 0.847 41 H 0.167 0.833 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.649 -31.699 6.266 38.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.332 5.332 3 C -0.003 4.003 4 C -0.075 4.075 5 N -0.311 5.311 6 C -0.069 4.069 7 C 0.236 3.764 8 O -0.498 6.498 9 N -0.231 5.231 10 C -0.460 4.460 11 H 0.074 0.926 12 C -0.213 4.213 13 N -0.573 5.573 14 Si 0.785 3.215 15 H -0.179 1.179 16 H -0.200 1.200 17 H -0.157 1.157 18 C 0.341 3.659 19 O -0.460 6.460 20 C -0.145 4.145 21 C -0.082 4.082 22 C -0.138 4.138 23 C -0.047 4.047 24 Cl -0.033 7.033 25 C -0.132 4.132 26 C -0.097 4.097 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.111 0.889 34 H 0.162 0.838 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.226 0.774 38 H 0.089 0.911 39 H 0.151 0.849 40 H 0.170 0.830 41 H 0.184 0.816 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -21.399 -30.917 6.989 38.244 hybrid contribution 1.248 -0.394 -1.196 1.773 sum -20.152 -31.311 5.793 37.683 Atomic orbital electron populations 1.22847 0.76757 1.05661 1.04053 1.47753 1.08787 1.04766 1.71941 1.21327 0.98127 0.84571 0.96323 1.22260 0.99141 0.88493 0.97578 1.60029 1.28359 1.29999 1.12749 1.21625 1.01025 0.92488 0.91767 1.20924 0.83454 0.88475 0.83558 1.90544 1.59534 1.68496 1.31189 1.42018 1.52230 1.21240 1.07644 1.19023 1.33353 0.98584 0.95072 0.92637 1.26123 0.96025 0.96170 1.02988 1.69807 1.39428 1.17926 1.30188 0.85357 0.79334 0.80163 0.76611 1.17893 1.20002 1.15668 1.18756 0.86665 0.84686 0.75840 1.90796 1.15714 1.87871 1.51642 1.19958 0.96560 0.93668 1.04345 1.21228 0.99624 0.91191 0.96182 1.21170 0.93383 0.98609 1.00611 1.21405 0.93894 0.88721 1.00633 1.98402 1.76175 1.31893 1.96826 1.21359 1.02070 0.90664 0.99156 1.22146 0.91790 0.98898 0.96846 0.89318 0.89355 0.88009 0.87515 0.91738 0.96035 0.88893 0.83824 0.91184 0.86217 0.77449 0.91101 0.84940 0.82964 0.81585 0.80408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.31 8.80 127.77 1.12 1.44 16 2 N -0.60 -9.71 2.87 -850.27 -2.44 -12.16 16 3 C 0.12 2.39 5.72 86.38 0.49 2.89 16 4 C 0.06 1.22 6.01 86.30 0.52 1.74 16 5 N -0.68 -20.30 6.13 -517.90 -3.17 -23.48 16 6 C 0.06 1.98 6.17 85.56 0.53 2.50 16 7 C 0.45 20.53 7.82 87.66 0.69 21.22 16 8 O -0.61 -34.47 15.78 -3.05 -0.05 -34.52 16 9 N -0.59 -28.13 5.09 -306.98 -1.56 -29.69 16 10 C -0.33 -19.61 10.16 84.04 0.85 -18.76 16 11 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 12 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 13 N -0.93 -56.52 13.96 21.66 0.30 -56.22 16 14 Si 0.97 38.91 27.74 68.60 1.90 40.81 16 15 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 18 C 0.55 11.71 7.44 86.77 0.65 12.36 16 19 O -0.58 -17.81 16.31 -3.89 -0.06 -17.88 16 20 C -0.14 -2.19 5.47 -20.09 -0.11 -2.30 16 21 C -0.06 -0.97 9.60 22.52 0.22 -0.75 16 22 C -0.12 -1.41 9.81 22.25 0.22 -1.19 16 23 C -0.02 -0.21 6.33 22.40 0.14 -0.06 16 24 Cl -0.06 -0.63 28.95 -2.72 -0.08 -0.71 16 25 C -0.11 -0.86 9.81 22.25 0.22 -0.64 16 26 C -0.08 -0.67 7.43 22.52 0.17 -0.51 16 27 H 0.09 0.22 7.44 -2.39 -0.02 0.20 16 28 H 0.09 0.45 8.11 -2.39 -0.02 0.43 16 29 H 0.10 0.44 4.72 -2.39 -0.01 0.43 16 30 H 0.11 1.83 8.07 -2.39 -0.02 1.81 16 31 H 0.06 1.62 7.37 -2.38 -0.02 1.60 16 32 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.34 11.43 8.43 -89.70 -0.76 10.67 16 35 H 0.07 1.89 8.14 -2.38 -0.02 1.88 16 36 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.39 15.35 5.76 -92.70 -0.53 14.81 16 38 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.13 2.22 7.95 -2.91 -0.02 2.20 16 40 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.17 0.40 8.06 -2.91 -0.02 0.37 16 42 H 0.18 0.56 4.80 -2.91 -0.01 0.54 16 Total: -1.00 -83.56 370.65 0.74 -82.82 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.27 Total: 33.42 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 6.17 Total: 17.60 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -6.88 Total: -121.55 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -0.11 Total: -52.39 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 1.90 Total: 40.81 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -83.56 0.74 -82.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493770301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.996 kcal (2) G-P(sol) polarization free energy of solvation -83.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds