Wall clock time and date at job start Tue Mar 31 2020 22:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.67563 * 2 1 4 4 C 1.53290 * 109.68398 * 120.55299 * 2 1 3 5 5 H 1.09004 * 109.51400 * 52.10583 * 4 2 1 6 6 C 1.50707 * 109.51347 * 292.00387 * 4 2 1 7 7 C 1.38272 * 119.98534 * 99.99844 * 6 4 2 8 8 C 1.38221 * 120.04586 * 179.97438 * 7 6 4 9 9 C 1.38214 * 120.03079 * 359.97438 * 8 7 6 10 10 C 1.38434 * 119.97219 * 0.02562 * 9 8 7 11 11 F 1.35109 * 120.02557 * 179.97438 * 10 9 8 12 12 C 1.38169 * 119.98811 * 279.72547 * 6 4 2 13 13 O 1.43053 * 109.25558 * 172.03134 * 4 2 1 14 14 C 1.42957 * 114.10971 * 297.45970 * 13 4 2 15 15 C 1.53298 * 109.26430 * 62.54639 * 14 13 4 16 16 N 1.47147 * 109.68412 * 239.48597 * 2 1 3 17 17 C 1.34775 * 120.98528 * 9.71441 * 16 2 1 18 18 O 1.21286 * 119.99529 * 355.27999 * 17 16 2 19 19 C 1.50696 * 120.00193 * 175.28230 * 17 16 2 20 20 S 1.81005 * 109.47140 * 179.97438 * 19 17 16 21 21 C 1.76194 * 99.99960 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00186 * 359.97438 * 21 20 19 23 23 C 1.38806 * 119.99934 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00135 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99923 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47085 * 90.00126 * 25 23 21 27 27 H 1.48496 * 109.47021 * 210.00190 * 25 23 21 28 28 H 1.48498 * 109.47101 * 330.00122 * 25 23 21 29 29 H 1.09004 * 109.46828 * 173.92754 * 1 2 3 30 30 H 1.08992 * 109.47321 * 293.92813 * 1 2 3 31 31 H 1.09000 * 109.47336 * 53.93164 * 1 2 3 32 32 H 1.07999 * 119.97486 * 359.97438 * 7 6 4 33 33 H 1.08005 * 119.98225 * 180.02562 * 8 7 6 34 34 H 1.07998 * 120.01319 * 180.02562 * 9 8 7 35 35 H 1.08005 * 120.01289 * 359.97438 * 12 6 4 36 36 H 1.09002 * 109.51505 * 302.60156 * 14 13 4 37 37 H 1.08998 * 109.51377 * 182.49374 * 14 13 4 38 38 H 1.09006 * 109.68028 * 67.39937 * 15 14 13 39 39 H 1.09002 * 109.68084 * 187.94895 * 15 14 13 40 40 H 1.09001 * 109.47050 * 299.99260 * 19 17 16 41 41 H 1.08994 * 109.47567 * 60.00390 * 19 17 16 42 42 H 0.97000 * 119.99996 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0463 -0.7337 1.2429 5 1 1.5748 -1.7142 1.3091 6 6 1.7148 0.0684 2.4750 7 6 0.6236 -0.2764 3.2511 8 6 0.3187 0.4581 4.3817 9 6 1.1046 1.5378 4.7379 10 6 2.1973 1.8839 3.9616 11 9 2.9659 2.9395 4.3085 12 6 2.5045 1.1446 2.8317 13 8 3.4645 -0.8917 1.1423 14 6 3.8860 -1.6893 0.0334 15 6 3.4639 -1.0045 -1.2716 16 7 2.0256 -0.7035 -1.1936 17 6 1.1870 -1.0620 -2.1859 18 8 -0.0064 -0.8826 -2.0656 19 6 1.7322 -1.6857 -3.4447 20 16 0.3678 -2.0525 -4.5762 21 6 1.2656 -2.7513 -5.9216 22 1 2.3407 -2.8380 -5.8665 23 6 0.5911 -3.1893 -7.0530 24 7 1.2618 -3.7109 -8.0584 25 14 -1.2684 -3.0387 -7.1487 26 1 -1.6287 -1.7273 -7.7453 27 1 -1.8107 -4.1327 -7.9937 28 1 -1.8438 -3.1361 -5.7833 29 1 -0.3633 -1.0220 -0.1087 30 1 -0.3633 0.4168 0.9393 31 1 -0.3634 0.6050 -0.8307 32 1 0.0092 -1.1202 2.9738 33 1 -0.5336 0.1876 4.9874 34 1 0.8663 2.1112 5.6215 35 1 3.3596 1.4108 2.2279 36 1 3.4211 -2.6733 0.0950 37 1 4.9705 -1.7971 0.0537 38 1 4.0262 -0.0795 -1.3993 39 1 3.6546 -1.6699 -2.1137 40 1 2.4249 -0.9931 -3.9229 41 1 2.2553 -2.6090 -3.1957 42 1 0.7904 -4.0173 -8.8488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526455040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:42 Heat of formation + Delta-G solvation = -99.049143 kcal Electronic energy + Delta-G solvation = -26921.540048 eV Core-core repulsion = 22907.334984 eV Total energy + Delta-G solvation = -4014.205064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -49.89849 -41.92370 -40.24458 -39.04071 -35.94853 -34.95964 -34.67551 -32.15112 -31.48463 -30.64959 -29.19659 -27.83876 -27.34574 -24.35351 -24.03774 -23.39091 -22.17833 -20.63923 -19.54795 -18.60255 -18.07163 -17.67806 -17.42009 -17.13673 -17.11558 -17.03124 -16.58531 -16.56769 -16.06367 -15.92214 -15.54099 -15.04780 -14.98248 -14.82365 -14.67274 -14.24308 -13.93049 -13.71124 -13.46248 -13.33417 -13.28933 -13.15474 -13.01840 -12.85605 -12.64366 -12.63228 -12.29299 -12.00933 -11.88555 -11.85427 -11.30927 -11.17642 -10.53228 -10.26095 -10.06630 -9.74773 -9.50618 -9.00148 -8.52001 -6.22706 0.08226 0.22380 0.95409 1.31096 1.43627 1.47867 1.51521 1.92167 2.24101 2.44187 2.65981 2.68881 2.86401 3.20554 3.42378 3.58497 3.66222 3.80049 3.86762 3.99664 4.07092 4.09679 4.19394 4.21433 4.25183 4.30864 4.37494 4.41905 4.51057 4.72050 4.76336 4.80950 4.83535 5.00988 5.07247 5.14217 5.21326 5.31828 5.44329 5.51262 5.70211 5.89309 6.01726 6.11041 6.16657 6.93213 7.04420 8.60288 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025854 B = 0.002482 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.759559 B =11278.060910 C =11891.493271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.125 3.875 3 H 0.081 0.919 4 C 0.130 3.870 5 H 0.078 0.922 6 C -0.061 4.061 7 C -0.116 4.116 8 C -0.085 4.085 9 C -0.149 4.149 10 C 0.075 3.925 11 F -0.150 7.150 12 C -0.135 4.135 13 O -0.379 6.379 14 C 0.049 3.951 15 C 0.064 3.936 16 N -0.611 5.611 17 C 0.537 3.463 18 O -0.540 6.540 19 C -0.109 4.109 20 S -0.171 6.171 21 C -0.528 4.528 22 H 0.063 0.937 23 C 0.045 3.955 24 N -0.917 5.917 25 Si 0.914 3.086 26 H -0.264 1.264 27 H -0.260 1.260 28 H -0.235 1.235 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.146 0.854 33 H 0.166 0.834 34 H 0.155 0.845 35 H 0.134 0.866 36 H 0.061 0.939 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 7.910 27.402 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.022 3.978 3 H 0.099 0.901 4 C 0.071 3.929 5 H 0.096 0.904 6 C -0.061 4.061 7 C -0.134 4.134 8 C -0.103 4.103 9 C -0.167 4.167 10 C 0.056 3.944 11 F -0.129 7.129 12 C -0.154 4.154 13 O -0.298 6.298 14 C -0.027 4.027 15 C -0.059 4.059 16 N -0.346 5.346 17 C 0.325 3.675 18 O -0.417 6.417 19 C -0.260 4.260 20 S 0.055 5.945 21 C -0.676 4.676 22 H 0.081 0.919 23 C -0.160 4.160 24 N -0.555 5.555 25 Si 0.736 3.264 26 H -0.188 1.188 27 H -0.184 1.184 28 H -0.159 1.159 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.164 0.836 33 H 0.184 0.816 34 H 0.173 0.827 35 H 0.152 0.848 36 H 0.079 0.921 37 H 0.156 0.844 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.638 8.213 27.533 28.778 hybrid contribution 1.160 -0.182 -1.238 1.707 sum 2.799 8.031 26.295 27.636 Atomic orbital electron populations 1.21996 0.92066 1.03044 1.01300 1.21950 0.96511 0.95787 0.83567 0.90112 1.21237 0.82700 0.97779 0.91144 0.90393 1.19271 0.96098 0.95287 0.95486 1.21347 0.96522 1.00930 0.94610 1.21325 0.99533 0.93283 0.96136 1.21498 0.94469 0.99656 1.01112 1.17926 0.92680 0.87097 0.96711 1.91481 1.74614 1.54861 1.91935 1.20981 1.01399 0.96060 0.96943 1.87992 1.20732 1.72534 1.48564 1.23181 1.02715 0.93210 0.83642 1.22781 0.79304 1.02958 1.00824 1.48173 1.09050 1.58653 1.18771 1.19991 0.86162 0.77592 0.83794 1.90753 1.16436 1.54545 1.79956 1.23332 1.02124 1.04743 0.95791 1.84675 1.13346 1.80549 1.15883 1.22450 0.95842 1.46400 1.02870 0.91924 1.25561 1.03261 0.93129 0.94060 1.70014 1.38236 1.40436 1.06782 0.85873 0.80155 0.79265 0.81112 1.18847 1.18440 1.15898 0.92424 0.91322 0.92730 0.83595 0.81645 0.82740 0.84808 0.92100 0.84358 0.88927 0.87495 0.87371 0.86949 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 7.52 71.98 0.54 -2.64 16 2 C 0.12 2.81 3.11 44.97 0.14 2.95 16 3 H 0.08 1.80 8.13 -2.38 -0.02 1.78 16 4 C 0.13 2.46 2.44 29.95 0.07 2.54 16 5 H 0.08 1.48 8.00 -2.39 -0.02 1.46 16 6 C -0.06 -1.05 4.36 -19.87 -0.09 -1.14 16 7 C -0.12 -1.58 8.69 22.27 0.19 -1.39 16 8 C -0.09 -0.93 10.04 22.26 0.22 -0.70 16 9 C -0.15 -1.96 10.03 22.31 0.22 -1.74 16 10 C 0.07 1.34 7.30 22.37 0.16 1.51 16 11 F -0.15 -3.05 17.27 44.97 0.78 -2.27 16 12 C -0.13 -2.50 9.33 22.31 0.21 -2.30 16 13 O -0.38 -7.12 9.71 -148.98 -1.45 -8.56 16 14 C 0.05 0.74 6.98 72.08 0.50 1.24 16 15 C 0.06 1.13 6.52 86.36 0.56 1.70 16 16 N -0.61 -15.20 3.02 -793.53 -2.40 -17.60 16 17 C 0.54 17.90 7.62 87.66 0.67 18.57 16 18 O -0.54 -21.29 11.42 -3.05 -0.03 -21.32 16 19 C -0.11 -3.97 4.60 71.23 0.33 -3.65 16 20 S -0.17 -8.41 18.55 -56.49 -1.05 -9.46 16 21 C -0.53 -30.12 10.04 67.96 0.68 -29.44 16 22 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 23 C 0.05 2.62 5.50 84.86 0.47 3.09 16 24 N -0.92 -55.19 13.97 21.65 0.30 -54.88 16 25 Si 0.91 44.34 27.74 68.60 1.90 46.25 16 26 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16 27 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.24 -11.32 6.74 99.48 0.67 -10.65 16 29 H 0.06 1.64 6.83 -2.38 -0.02 1.63 16 30 H 0.07 1.38 6.59 -2.39 -0.02 1.37 16 31 H 0.05 1.67 6.75 -2.39 -0.02 1.65 16 32 H 0.15 1.56 8.04 -2.91 -0.02 1.54 16 33 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 34 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.13 2.53 7.77 -2.91 -0.02 2.51 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.44 8.14 -2.38 -0.02 1.43 16 39 H 0.11 1.82 6.07 -2.39 -0.01 1.81 16 40 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 41 H 0.11 3.72 7.46 -2.40 -0.02 3.70 16 42 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -71.60 357.37 3.95 -67.65 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 1.00 Total: 11.59 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.89 Total: -11.40 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -2.09 Total: -72.48 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.48 Total: -29.88 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.90 Total: 46.25 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.05 Total: -9.46 kcal Total: -71.60 3.95 -67.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526455040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.400 kcal (2) G-P(sol) polarization free energy of solvation -71.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds