Wall clock time and date at job start Tue Mar 31 2020 23:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40049 * 125.86667 * 2 1 4 4 C 1.30224 * 109.72283 * 180.02562 * 3 2 1 5 5 C 1.41243 * 108.47330 * 359.97438 * 4 3 2 6 6 C 1.36328 * 125.86904 * 180.02562 * 2 1 3 7 7 N 1.33115 * 134.56424 * 0.26745 * 6 2 1 8 8 C 1.32133 * 120.58157 * 180.18663 * 7 6 2 9 9 N 1.38823 * 118.77887 * 179.76004 * 8 7 6 10 10 C 1.34768 * 119.99995 * 179.73180 * 9 8 7 11 11 O 1.21546 * 120.00121 * 0.02562 * 10 9 8 12 12 C 1.47833 * 120.00073 * 179.72510 * 10 9 8 13 13 C 1.39941 * 120.02711 * 359.97438 * 12 10 9 14 14 C 1.38324 * 120.35534 * 179.74070 * 13 12 10 15 15 C 1.37754 * 120.41568 * 0.56044 * 14 13 12 16 16 C 1.40752 * 120.04377 * 359.69782 * 15 14 13 17 17 C 1.41436 * 120.17766 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00091 * 334.92585 * 17 16 15 19 19 C 1.39938 * 120.00067 * 154.92307 * 17 16 15 20 20 N 1.30828 * 120.00149 * 342.59635 * 19 17 16 21 21 Si 1.86800 * 119.99824 * 162.59779 * 19 17 16 22 22 H 1.48496 * 109.47145 * 60.00179 * 21 19 17 23 23 H 1.48501 * 109.46809 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47201 * 299.99943 * 21 19 17 25 25 C 1.39027 * 120.02992 * 180.27969 * 12 10 9 26 26 N 1.32763 * 122.43971 * 359.48989 * 8 7 6 27 27 C 1.32548 * 121.16624 * 0.24874 * 26 8 7 28 28 O 1.35373 * 120.73719 * 179.97438 * 27 26 8 29 29 H 1.08998 * 109.46703 * 89.98342 * 1 2 3 30 30 H 1.08998 * 109.46969 * 209.97758 * 1 2 3 31 31 H 1.08995 * 109.47553 * 329.98315 * 1 2 3 32 32 H 1.08001 * 125.76773 * 179.97438 * 4 3 2 33 33 H 0.97000 * 119.99872 * 359.73529 * 9 8 7 34 34 H 1.07995 * 119.81975 * 0.02562 * 13 12 10 35 35 H 1.08006 * 119.79249 * 180.26591 * 14 13 12 36 36 H 1.08003 * 119.97779 * 179.72275 * 15 14 13 37 37 H 0.96988 * 120.00386 * 179.97438 * 20 19 17 38 38 H 1.07996 * 120.20262 * 359.95001 * 25 12 10 39 39 H 0.96702 * 113.99877 * 90.00110 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2856 1.1349 0.0000 4 6 3.5365 0.7728 -0.0005 5 6 3.5939 -0.6384 -0.0003 6 6 2.2639 -1.1047 -0.0005 7 7 2.0426 -2.4174 -0.0055 8 6 3.0526 -3.2693 -0.0007 9 7 2.7789 -4.6303 -0.0011 10 6 3.7903 -5.5210 -0.0017 11 8 4.9421 -5.1328 -0.0015 12 6 3.4989 -6.9704 0.0040 13 6 2.1730 -7.4180 0.0106 14 6 1.8926 -8.7725 0.0105 15 6 2.9144 -9.6963 0.0156 16 6 4.2543 -9.2651 0.0145 17 6 5.3057 -10.2111 0.0192 18 1 5.1402 -11.2004 0.4198 19 6 6.5603 -9.8654 -0.4953 20 7 6.6825 -8.8227 -1.2759 21 14 8.0605 -10.8928 -0.0674 22 1 7.8541 -12.2879 -0.5325 23 1 9.2584 -10.3207 -0.7330 24 1 8.2619 -10.8862 1.4038 25 6 4.5418 -7.8897 0.0092 26 7 4.3194 -2.8721 -0.0008 27 6 4.6346 -1.5846 -0.0008 28 8 5.9293 -1.1893 -0.0003 29 1 -0.3633 0.0003 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 4.3865 1.4391 -0.0011 33 1 1.8597 -4.9402 -0.0010 34 1 1.3645 -6.7021 0.0110 35 1 0.8659 -9.1080 0.0113 36 1 2.6874 -10.7522 0.0201 37 1 7.5521 -8.5828 -1.6322 38 1 5.5665 -7.5489 0.0083 39 1 6.3058 -1.0745 -0.8836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533902965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:43 Heat of formation + Delta-G solvation = 69.312353 kcal Electronic energy + Delta-G solvation = -27727.354901 eV Core-core repulsion = 23637.219301 eV Total energy + Delta-G solvation = -4090.135600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.29080 -41.52522 -40.13232 -39.05502 -38.47504 -35.87881 -35.42447 -34.78854 -33.63333 -32.22076 -31.31582 -30.63333 -28.11121 -27.29474 -25.94826 -25.08634 -23.68248 -22.81186 -22.34256 -21.43521 -20.44431 -19.76557 -19.04160 -18.64197 -18.10769 -17.53138 -17.31905 -16.91512 -16.58854 -16.40036 -16.32808 -15.78901 -15.64811 -15.21889 -15.08051 -14.70535 -14.53871 -14.29956 -13.69277 -13.57822 -13.47526 -13.27105 -12.96903 -12.80904 -12.74890 -12.53708 -12.21713 -12.13072 -12.01870 -11.76829 -11.67433 -11.53155 -11.06483 -11.03546 -10.29244 -10.06957 -9.68078 -9.49042 -9.40132 -8.66347 -6.37816 -0.76273 0.00028 0.35151 0.74057 1.00553 1.26752 1.38135 1.48859 1.51642 1.52805 1.93505 2.19268 2.20962 2.56034 2.79133 2.96839 3.14483 3.42926 3.67880 3.70664 3.84958 3.99403 4.38984 4.40785 4.41309 4.54856 4.59603 4.66132 4.88223 5.04878 5.09453 5.13953 5.15892 5.28982 5.36213 5.48543 5.76097 5.86415 5.88755 5.99960 6.06185 6.25275 6.29183 6.46357 6.57443 6.87257 6.91712 6.93631 7.10683 8.30438 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018152 B = 0.002730 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.185342 B =10255.073452 C =11705.811547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.384 5.384 3 N -0.260 5.260 4 C 0.133 3.867 5 C -0.334 4.334 6 C 0.363 3.637 7 N -0.577 5.577 8 C 0.604 3.396 9 N -0.621 5.621 10 C 0.563 3.437 11 O -0.502 6.502 12 C -0.134 4.134 13 C -0.198 4.198 14 C -0.092 4.092 15 C -0.212 4.212 16 C 0.068 3.932 17 C -0.495 4.495 18 H 0.085 0.915 19 C 0.031 3.969 20 N -0.823 5.823 21 Si 0.981 3.019 22 H -0.253 1.253 23 H -0.273 1.273 24 H -0.262 1.262 25 C -0.122 4.122 26 N -0.584 5.584 27 C 0.477 3.523 28 O -0.468 6.468 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.243 0.757 33 H 0.437 0.563 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.111 0.889 37 H 0.287 0.713 38 H 0.102 0.898 39 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.137 17.432 0.230 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.174 5.174 3 N -0.073 5.073 4 C -0.064 4.064 5 C -0.349 4.349 6 C 0.113 3.887 7 N -0.310 5.310 8 C 0.245 3.755 9 N -0.273 5.273 10 C 0.352 3.648 11 O -0.373 6.373 12 C -0.138 4.138 13 C -0.217 4.217 14 C -0.110 4.110 15 C -0.231 4.231 16 C 0.066 3.934 17 C -0.525 4.525 18 H 0.104 0.896 19 C -0.184 4.184 20 N -0.449 5.449 21 Si 0.801 3.199 22 H -0.176 1.176 23 H -0.197 1.197 24 H -0.186 1.186 25 C -0.143 4.143 26 N -0.318 5.318 27 C 0.279 3.721 28 O -0.280 6.280 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.259 0.741 33 H 0.279 0.721 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -9.414 17.823 0.638 20.166 hybrid contribution 1.246 -0.609 -0.461 1.461 sum -8.168 17.214 0.178 19.055 Atomic orbital electron populations 1.22198 0.70806 1.05904 1.04832 1.48650 1.07642 0.99078 1.62001 1.76993 1.02450 1.06620 1.21258 1.24361 0.95903 0.91635 0.94504 1.20378 0.94247 0.97367 1.22955 1.18768 0.89467 0.87235 0.93186 1.66671 1.34464 1.00487 1.29356 1.18781 0.82967 0.86245 0.87552 1.43179 1.12629 1.00507 1.71016 1.19018 0.84112 0.86666 0.74990 1.90822 1.21211 1.80137 1.45080 1.19485 0.95936 0.89272 1.09072 1.20875 0.93278 0.96472 1.11095 1.20925 0.98935 0.92476 0.98693 1.21453 0.92412 0.99044 1.10224 1.17920 0.93560 0.92082 0.89873 1.19843 0.95492 1.00134 1.36985 0.89644 1.26821 1.03405 0.96268 0.91953 1.69858 1.27364 1.25091 1.22549 0.85264 0.75935 0.79073 0.79588 1.17643 1.19724 1.18599 1.21423 0.97618 0.92972 1.02243 1.68040 1.20458 1.18933 1.24376 1.18890 0.85292 0.84718 0.83185 1.84570 1.20365 1.86677 1.36365 0.89437 0.88662 0.87063 0.74098 0.72101 0.84522 0.84074 0.87090 0.90223 0.88030 0.69924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.34 11.47 127.77 1.47 2.81 16 2 N -0.38 -8.29 4.05 -366.66 -1.48 -9.78 16 3 N -0.26 -5.23 12.44 -56.42 -0.70 -5.93 16 4 C 0.13 2.34 12.05 85.67 1.03 3.37 16 5 C -0.33 -8.32 6.19 -21.29 -0.13 -8.46 16 6 C 0.36 9.87 8.04 134.19 1.08 10.95 16 7 N -0.58 -17.56 10.48 -195.75 -2.05 -19.61 16 8 C 0.60 21.36 8.36 261.31 2.18 23.55 16 9 N -0.62 -21.92 5.35 -316.30 -1.69 -23.61 16 10 C 0.56 24.95 7.73 86.78 0.67 25.62 16 11 O -0.50 -25.98 14.49 -3.86 -0.06 -26.03 16 12 C -0.13 -6.18 5.87 -20.14 -0.12 -6.30 16 13 C -0.20 -7.47 9.55 22.70 0.22 -7.25 16 14 C -0.09 -3.50 10.01 22.18 0.22 -3.28 16 15 C -0.21 -9.53 9.78 22.77 0.22 -9.30 16 16 C 0.07 3.59 5.57 -21.32 -0.12 3.48 16 17 C -0.50 -26.37 9.05 23.47 0.21 -26.15 16 18 H 0.09 4.27 7.90 -2.91 -0.02 4.25 16 19 C 0.03 1.58 5.14 85.25 0.44 2.02 16 20 N -0.82 -45.07 10.97 21.82 0.24 -44.84 16 21 Si 0.98 39.07 29.59 68.60 2.03 41.10 16 22 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 23 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 C -0.12 -6.60 8.23 23.01 0.19 -6.41 16 26 N -0.58 -22.01 7.82 -309.98 -2.42 -24.44 16 27 C 0.48 13.87 7.89 85.17 0.67 14.54 16 28 O -0.47 -10.60 13.58 -86.64 -1.18 -11.78 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.24 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.44 12.36 6.82 -92.71 -0.63 11.72 16 34 H 0.14 3.88 6.38 -2.91 -0.02 3.86 16 35 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 36 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 37 H 0.29 14.56 8.30 -92.72 -0.77 13.79 16 38 H 0.10 6.13 5.77 -2.91 -0.02 6.11 16 39 H 0.44 5.04 9.06 -74.06 -0.67 4.37 16 Total: -1.00 -76.91 347.85 0.78 -76.12 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.14 Total: 29.60 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 8.24 Total: 19.19 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -8.11 Total: -128.20 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.23 Total: -37.81 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -76.91 0.78 -76.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533902965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.437 kcal (2) G-P(sol) polarization free energy of solvation -76.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds