Wall clock time and date at job start Wed Apr 1 2020 00:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35921 * 117.00370 * 2 1 4 4 C 1.38784 * 120.00762 * 0.23196 * 3 2 1 5 5 C 1.38185 * 120.09184 * 180.25187 * 4 3 2 6 6 C 1.38238 * 120.10866 * 359.49565 * 5 4 3 7 7 Cl 1.73607 * 119.98996 * 180.25204 * 6 5 4 8 8 C 1.38963 * 120.02163 * 0.27316 * 6 5 4 9 9 N 1.40000 * 120.04710 * 179.97438 * 8 6 5 10 10 C 1.34782 * 119.99808 * 197.22537 * 9 8 6 11 11 O 1.21583 * 120.00210 * 4.78030 * 10 9 8 12 12 N 1.34780 * 119.99678 * 184.78595 * 10 9 8 13 13 C 1.46965 * 120.59533 * 4.29774 * 12 10 9 14 14 C 1.53808 * 108.40143 * 124.75756 * 13 12 10 15 15 N 1.46959 * 108.58114 * 49.63424 * 14 13 12 16 16 C 1.36937 * 120.59642 * 124.62279 * 15 14 13 17 17 H 1.08001 * 120.00529 * 201.87638 * 16 15 14 18 18 C 1.38816 * 119.99829 * 21.87576 * 16 15 14 19 19 N 1.31616 * 120.00338 * 220.26095 * 18 16 15 20 20 Si 1.86800 * 119.99832 * 40.25993 * 18 16 15 21 21 H 1.48500 * 109.47176 * 95.44837 * 20 18 16 22 22 H 1.48494 * 109.47339 * 215.44986 * 20 18 16 23 23 H 1.48502 * 109.47193 * 335.45388 * 20 18 16 24 24 C 1.46965 * 118.81193 * 304.65155 * 15 14 13 25 25 C 1.46959 * 120.59287 * 184.57160 * 12 10 9 26 26 C 1.38583 * 120.01487 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47199 * 59.99834 * 1 2 3 28 28 H 1.09000 * 109.47724 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47337 * 300.00165 * 1 2 3 30 30 H 1.08006 * 119.95363 * 0.02562 * 4 3 2 31 31 H 1.08007 * 119.94292 * 179.76764 * 5 4 3 32 32 H 0.96996 * 120.00122 * 17.22574 * 9 8 6 33 33 H 1.09002 * 109.60679 * 244.54319 * 13 12 10 34 34 H 1.09003 * 109.61127 * 5.04897 * 13 12 10 35 35 H 1.09003 * 109.74013 * 289.84476 * 14 13 12 36 36 H 1.09002 * 109.67497 * 169.38440 * 14 13 12 37 37 H 0.96992 * 120.00273 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.61163 * 295.47638 * 24 15 14 39 39 H 1.09005 * 109.75035 * 175.05501 * 24 15 14 40 40 H 1.09001 * 109.61049 * 354.94869 * 25 12 10 41 41 H 1.09003 * 109.61152 * 115.28542 * 25 12 10 42 42 H 1.08005 * 120.05569 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2904 2.3751 0.0049 5 6 1.9160 3.6072 -0.0004 6 6 3.2963 3.6842 0.0000 7 17 4.0790 5.2338 0.0000 8 6 4.0574 2.5215 0.0000 9 7 5.4553 2.5988 -0.0001 10 6 6.1897 1.5228 -0.3458 11 8 5.6398 0.5129 -0.7408 12 7 7.5336 1.5664 -0.2535 13 6 8.2069 2.7448 0.3103 14 6 9.1085 2.2817 1.4671 15 7 9.9271 1.1541 1.0003 16 6 11.2926 1.1986 1.0932 17 1 11.8980 0.5693 0.4576 18 6 11.8988 2.0527 2.0043 19 7 12.9858 2.7128 1.6651 20 14 11.1718 2.2650 3.7119 21 1 11.8611 1.3535 4.6602 22 1 11.3532 3.6704 4.1558 23 1 9.7233 1.9398 3.6771 24 6 9.2541 -0.0220 0.4314 25 6 8.3522 0.4387 -0.7203 26 6 3.4300 1.2838 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2119 2.3179 0.0091 31 1 1.3256 4.5116 -0.0004 32 1 5.8953 3.4267 0.2486 33 1 8.8120 3.2236 -0.4597 34 1 7.4622 3.4479 0.6836 35 1 8.4932 1.9634 2.3087 36 1 9.7571 3.1009 1.7774 37 1 13.4095 3.3092 2.3018 38 1 8.6493 -0.5045 1.1992 39 1 9.9971 -0.7256 0.0554 40 1 7.7037 -0.3816 -1.0277 41 1 8.9653 0.7562 -1.5639 42 1 4.0193 0.3787 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001562266576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:14 Heat of formation + Delta-G solvation = 15.895742 kcal Electronic energy + Delta-G solvation = -27321.933238 eV Core-core repulsion = 23330.588814 eV Total energy + Delta-G solvation = -3991.344424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.05092 -39.92799 -38.16889 -37.17728 -36.32284 -34.77053 -34.05955 -31.72902 -30.79518 -30.67232 -29.32898 -27.53024 -27.03385 -24.06533 -23.37601 -23.16992 -22.25185 -20.96104 -19.50059 -18.97192 -17.99111 -16.87209 -16.61779 -16.35339 -16.17254 -16.00170 -15.61569 -15.11587 -14.67088 -14.37461 -14.23629 -13.97869 -13.89887 -13.65322 -13.54286 -13.02365 -12.75790 -12.72026 -12.62087 -12.20748 -12.14463 -11.97022 -11.61153 -11.26264 -11.17140 -11.02869 -10.86718 -10.53454 -10.48674 -10.39855 -10.26501 -9.69171 -9.53045 -8.86451 -8.55500 -8.32430 -8.05981 -7.14921 -6.15967 -3.28549 0.99541 1.10264 1.95455 2.47877 3.04581 3.06065 3.32087 3.45369 3.51429 3.57430 3.81757 4.46705 4.48159 4.70943 4.73678 4.80180 4.86101 4.93746 5.12256 5.16070 5.19873 5.40677 5.43911 5.52916 5.68931 5.72859 5.81665 5.89843 5.94719 6.00388 6.01209 6.13053 6.26202 6.42770 6.52176 6.61071 6.65205 6.75778 6.98285 7.17854 7.78425 7.85535 8.16781 8.49503 8.81412 9.61699 10.00231 10.97486 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016011 B = 0.003106 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.392029 B = 9013.664993 C = 9874.591189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.157 3.843 4 C -0.230 4.230 5 C -0.045 4.045 6 C -0.118 4.118 7 Cl -0.070 7.070 8 C 0.232 3.768 9 N -0.679 5.679 10 C 0.705 3.295 11 O -0.574 6.574 12 N -0.607 5.607 13 C 0.087 3.913 14 C 0.135 3.865 15 N -0.598 5.598 16 C -0.278 4.278 17 H 0.086 0.914 18 C 0.040 3.960 19 N -0.871 5.871 20 Si 0.827 3.173 21 H -0.292 1.292 22 H -0.293 1.293 23 H -0.260 1.260 24 C 0.133 3.867 25 C 0.112 3.888 26 C -0.172 4.172 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.412 0.588 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.079 0.921 37 H 0.263 0.737 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.382 1.771 -3.919 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.110 3.890 4 C -0.250 4.250 5 C -0.064 4.064 6 C -0.148 4.148 7 Cl -0.042 7.042 8 C 0.132 3.868 9 N -0.327 5.327 10 C 0.407 3.593 11 O -0.452 6.452 12 N -0.342 5.342 13 C -0.038 4.038 14 C 0.007 3.993 15 N -0.321 5.321 16 C -0.404 4.404 17 H 0.103 0.897 18 C -0.162 4.162 19 N -0.510 5.510 20 Si 0.653 3.347 21 H -0.220 1.220 22 H -0.220 1.220 23 H -0.184 1.184 24 C 0.006 3.994 25 C -0.012 4.012 26 C -0.193 4.193 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.252 0.748 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -24.270 1.065 -4.175 24.649 hybrid contribution -0.176 1.104 1.344 1.748 sum -24.446 2.169 -2.831 24.705 Atomic orbital electron populations 1.23091 0.78331 1.04074 1.01372 1.86128 1.21331 1.26584 1.88182 1.18879 0.91876 0.84194 0.94034 1.21094 1.00201 0.91530 1.12161 1.20519 0.91319 0.98058 0.96497 1.20391 0.92945 0.84998 1.16506 1.98353 1.80851 1.27473 1.97491 1.16933 0.82054 0.91861 0.95905 1.42968 1.03918 1.15788 1.69990 1.15821 0.81930 0.82875 0.78667 1.90756 1.69762 1.31342 1.53379 1.47307 1.02932 1.20224 1.63706 1.22600 0.95956 0.86416 0.98837 1.21714 0.92868 0.91939 0.92742 1.44284 1.03140 1.12638 1.72046 1.18770 0.79727 1.24610 1.17333 0.89664 1.25087 0.95608 0.96955 0.98507 1.70182 1.22687 1.23978 1.34176 0.87729 0.80718 0.76789 0.89452 1.21988 1.21988 1.18432 1.21349 0.94571 0.89942 0.93522 1.22210 0.93046 0.87994 0.97981 1.21055 0.91904 0.99051 1.07334 0.92541 0.88144 0.92545 0.84785 0.84465 0.74793 0.90275 0.91881 0.94930 0.90287 0.92679 0.95410 0.90472 0.89255 0.91240 0.80195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.58 10.49 -19.49 -0.20 -3.78 16 3 C 0.16 1.93 6.68 -39.25 -0.26 1.66 16 4 C -0.23 -2.23 9.03 -39.40 -0.36 -2.59 16 5 C -0.04 -0.44 9.82 -39.60 -0.39 -0.83 16 6 C -0.12 -1.40 6.34 -39.31 -0.25 -1.65 16 7 Cl -0.07 -0.76 27.68 -51.86 -1.44 -2.20 16 8 C 0.23 3.22 6.53 -83.66 -0.55 2.68 16 9 N -0.68 -9.77 5.16 -14.21 -0.07 -9.84 16 10 C 0.70 11.79 8.17 -86.91 -0.71 11.08 16 11 O -0.57 -10.71 12.52 5.29 0.07 -10.64 16 12 N -0.61 -10.18 2.94 -177.94 -0.52 -10.70 16 13 C 0.09 1.42 6.56 -3.37 -0.02 1.40 16 14 C 0.13 2.73 4.59 -3.37 -0.02 2.71 16 15 N -0.60 -13.42 2.78 -171.77 -0.48 -13.90 16 16 C -0.28 -7.31 9.86 -15.06 -0.15 -7.46 16 17 H 0.09 2.38 8.02 -52.49 -0.42 1.96 16 18 C 0.04 1.10 4.78 -17.43 -0.08 1.01 16 19 N -0.87 -25.17 13.97 55.49 0.78 -24.40 16 20 Si 0.83 20.23 26.36 -169.99 -4.48 15.75 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.26 -6.07 5.09 56.52 0.29 -5.78 16 24 C 0.13 2.51 6.67 -3.60 -0.02 2.49 16 25 C 0.11 1.88 6.60 -3.60 -0.02 1.85 16 26 C -0.17 -2.51 8.77 -39.26 -0.34 -2.86 16 27 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 30 H 0.13 0.91 6.29 -52.48 -0.33 0.58 16 31 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.41 5.31 5.10 -40.82 -0.21 5.10 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.06 0.85 5.67 -51.93 -0.29 0.55 16 35 H 0.03 0.68 6.92 -51.93 -0.36 0.32 16 36 H 0.08 1.72 5.28 -51.93 -0.27 1.44 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 1.40 7.91 -51.93 -0.41 0.99 16 40 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.18 3.05 5.22 -52.62 -0.27 2.78 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -31.15 347.06 -8.40 -39.55 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.09 Total: 4.26 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -2.18 Total: 10.68 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.30 Total: -58.84 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.14 Total: -14.43 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.48 Total: 15.75 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.44 Total: -2.20 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.15 -8.40 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562266576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.446 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds