Wall clock time and date at job start Tue Mar 31 2020 23:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46903 * 109.47578 * 185.00096 * 4 2 1 6 6 C 1.46903 * 111.00177 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47148 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99715 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00371 * 179.97438 * 7 6 5 10 10 C 1.37097 * 120.00527 * 179.97438 * 9 7 6 11 11 H 1.07993 * 119.99535 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00225 * 180.02562 * 10 9 7 13 13 N 1.31418 * 120.00023 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00096 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47035 * 59.99686 * 14 12 10 16 16 H 1.48499 * 109.47426 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47170 * 299.99900 * 14 12 10 18 18 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 19 19 C 1.34777 * 120.00376 * 275.00479 * 18 2 1 20 20 O 1.21563 * 119.99920 * 359.97438 * 19 18 2 21 21 C 1.47788 * 120.00249 * 179.97438 * 19 18 2 22 22 C 1.39617 * 120.12669 * 359.72018 * 21 19 18 23 23 C 1.37904 * 119.86362 * 179.79349 * 22 21 19 24 24 C 1.38514 * 120.12825 * 0.48369 * 23 22 21 25 25 Cl 1.73598 * 119.86521 * 179.72432 * 24 23 22 26 26 C 1.38508 * 120.26536 * 359.74743 * 24 23 22 27 27 C 1.37894 * 120.13553 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 32 32 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 33 33 H 1.00906 * 110.99766 * 303.95404 * 5 4 2 34 34 H 1.09001 * 109.46813 * 299.99603 * 6 5 4 35 35 H 1.08993 * 109.47342 * 59.99787 * 6 5 4 36 36 H 0.97004 * 119.99872 * 359.97438 * 9 7 6 37 37 H 0.96992 * 119.99832 * 180.02562 * 13 12 10 38 38 H 0.97006 * 119.99921 * 94.99902 * 18 2 1 39 39 H 1.07996 * 120.07220 * 0.02748 * 22 21 19 40 40 H 1.07995 * 119.93688 * 180.23055 * 23 22 21 41 41 H 1.08001 * 119.93096 * 180.02562 * 26 24 23 42 42 H 1.08001 * 120.07004 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5041 -0.8267 -1.1903 6 6 4.0305 -1.5149 -2.3766 7 6 5.5317 -1.6045 -2.2806 8 8 6.1066 -1.1403 -1.3187 9 7 6.2355 -2.2004 -3.2633 10 6 7.6013 -2.2815 -3.1762 11 1 8.1132 -1.8681 -2.3198 12 6 8.3269 -2.8954 -4.1897 13 7 7.7040 -3.3989 -5.2316 14 14 10.1878 -3.0065 -4.0707 15 1 10.5613 -3.7667 -2.8508 16 1 10.7199 -3.7027 -5.2696 17 1 10.7616 -1.6388 -3.9966 18 7 2.0183 -0.6905 1.1962 19 6 2.1470 -0.0182 2.3572 20 8 1.8582 1.1614 2.4116 21 6 2.6391 -0.7149 3.5640 22 6 2.9659 -2.0710 3.5059 23 6 3.4287 -2.7148 4.6343 24 6 3.5599 -2.0210 5.8260 25 17 4.1363 -2.8399 7.2440 26 6 3.2326 -0.6768 5.8909 27 6 2.7733 -0.0211 4.7681 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7517 -0.1584 -2.1369 33 1 3.9281 0.0826 -1.0823 34 1 3.6097 -2.5190 -2.4307 35 1 3.7560 -0.9572 -3.2719 36 1 5.7757 -2.5720 -4.0324 37 1 8.2105 -3.8277 -5.9389 38 1 2.2490 -1.6317 1.1527 39 1 2.8602 -2.6139 2.5784 40 1 3.6854 -3.7628 4.5898 41 1 3.3374 -0.1410 6.8227 42 1 2.5180 1.0270 4.8200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569032451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:56 Heat of formation + Delta-G solvation = -57.157432 kcal Electronic energy + Delta-G solvation = -25822.338657 eV Core-core repulsion = 21827.826410 eV Total energy + Delta-G solvation = -3994.512248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.44337 -38.85236 -38.28835 -36.85048 -36.54159 -34.36836 -33.71781 -32.07671 -31.33181 -31.23744 -30.18300 -27.63953 -25.13549 -24.30505 -23.26802 -23.05072 -21.41592 -20.52018 -19.28848 -18.36479 -17.90344 -16.93807 -16.72115 -15.95954 -15.63660 -15.15797 -15.14510 -14.95571 -14.58236 -14.43823 -14.07893 -13.97300 -13.83513 -13.66691 -13.50161 -13.26330 -12.62537 -12.59781 -12.43321 -12.05545 -11.88486 -11.84792 -11.70700 -11.57346 -11.50701 -11.15767 -11.04069 -10.98077 -10.46185 -10.23921 -10.04683 -9.52624 -9.42441 -9.22686 -8.97453 -8.52274 -8.15156 -7.99159 -6.44445 -3.85391 0.41235 0.95685 1.75495 2.62334 3.03420 3.18401 3.24311 3.28746 3.55263 3.87360 4.01586 4.24969 4.39641 4.50406 4.56562 4.73530 4.90258 4.98026 5.04400 5.06930 5.19310 5.23570 5.25410 5.40790 5.51770 5.53026 5.58233 5.73435 5.76699 5.83791 5.85874 5.90924 5.98782 6.01218 6.21631 6.33004 6.43219 7.09207 7.45520 7.52551 7.54334 8.03165 8.13559 8.58154 9.15133 9.51119 10.02510 10.73188 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.002514 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.044889 B =11136.734453 C =13608.277946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.088 0.912 4 C 0.047 3.953 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.582 6.582 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.700 5.700 19 C 0.561 3.439 20 O -0.543 6.543 21 C -0.126 4.126 22 C -0.068 4.068 23 C -0.117 4.117 24 C -0.014 4.014 25 Cl -0.067 7.067 26 C -0.121 4.121 27 C -0.049 4.049 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.351 0.649 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.405 0.595 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.806 1.338 15.614 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.106 0.894 4 C -0.083 4.083 5 N -0.300 5.300 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.351 5.351 19 C 0.348 3.652 20 O -0.422 6.422 21 C -0.129 4.129 22 C -0.086 4.086 23 C -0.135 4.135 24 C -0.041 4.041 25 Cl -0.038 7.038 26 C -0.139 4.139 27 C -0.068 4.068 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.171 0.829 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.241 0.759 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.491 1.745 16.594 22.767 hybrid contribution 0.808 -0.310 -1.193 1.474 sum -14.682 1.435 15.401 21.327 Atomic orbital electron populations 1.22143 0.94815 1.02316 1.02732 1.20983 0.93687 0.97578 0.83750 0.89360 1.22325 0.89600 1.00740 0.95658 1.60084 1.02989 1.26981 1.39970 1.21679 0.95358 0.99838 0.91351 1.19793 0.87993 0.84674 0.85077 1.90537 1.71093 1.51844 1.33155 1.41856 1.07401 1.50911 1.19803 1.19651 0.81514 1.35287 1.06519 0.87986 1.25260 1.00710 0.96713 0.95198 1.69602 1.36826 1.38530 1.09391 0.85920 0.82094 0.78627 0.77608 1.19853 1.20961 1.19893 1.45744 1.66152 1.14446 1.08787 1.18114 0.77535 0.86397 0.83145 1.90762 1.50812 1.15407 1.85194 1.20100 1.03771 0.94357 0.94690 1.21350 0.95500 0.93388 0.98408 1.21035 1.00522 1.01041 0.90938 1.21203 1.00646 0.93413 0.88800 1.98387 1.87160 1.78980 1.39268 1.21040 1.00553 0.92561 0.99773 1.21237 0.94589 1.00644 0.90355 0.92252 0.91467 0.91827 0.90398 0.93714 0.82903 0.89595 0.93796 0.77479 0.91799 0.75868 0.84315 0.84163 0.84291 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.15 1.52 2.81 -67.94 -0.19 1.33 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C 0.05 0.49 5.24 -3.83 -0.02 0.47 16 5 N -0.67 -9.77 5.85 -115.06 -0.67 -10.44 16 6 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 7 C 0.44 10.04 7.82 -10.99 -0.09 9.96 16 8 O -0.58 -15.49 15.78 5.55 0.09 -15.40 16 9 N -0.56 -13.97 5.29 -10.97 -0.06 -14.03 16 10 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 11 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 12 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 13 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 14 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 N -0.70 -7.71 4.75 -54.77 -0.26 -7.97 16 19 C 0.56 7.21 7.74 -12.36 -0.10 7.12 16 20 O -0.54 -8.54 16.01 5.31 0.09 -8.46 16 21 C -0.13 -1.41 5.87 -104.97 -0.62 -2.03 16 22 C -0.07 -0.65 9.54 -39.19 -0.37 -1.03 16 23 C -0.12 -1.08 9.81 -39.60 -0.39 -1.47 16 24 C -0.01 -0.13 6.33 -39.38 -0.25 -0.38 16 25 Cl -0.07 -0.60 28.95 -51.86 -1.50 -2.10 16 26 C -0.12 -1.10 9.81 -39.61 -0.39 -1.49 16 27 C -0.05 -0.51 9.59 -39.20 -0.38 -0.89 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.35 5.70 8.43 -39.29 -0.33 5.37 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.41 3.95 6.63 -40.82 -0.27 3.68 16 39 H 0.14 1.10 6.40 -52.49 -0.34 0.77 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.15 1.44 7.65 -52.49 -0.40 1.04 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -32.57 379.11 -8.98 -41.55 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -5.37 Total: 15.34 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.70 Total: 3.45 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.27 Total: -55.98 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.17 Total: -23.86 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.57 -8.98 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569032451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.604 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds