Wall clock time and date at job start Tue Mar 31 2020 23:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46706 * 2 1 4 4 N 1.46503 * 109.47120 * 119.99731 * 2 1 3 5 5 C 1.36935 * 120.00360 * 274.72511 * 4 2 1 6 6 H 1.08000 * 119.99618 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99996 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00239 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99638 * 180.02562 * 7 5 4 10 10 H 1.48489 * 109.47337 * 60.00272 * 9 7 5 11 11 H 1.48500 * 109.46872 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47241 * 299.99923 * 9 7 5 13 13 C 1.53002 * 109.47448 * 240.00061 * 2 1 3 14 14 H 1.08994 * 109.51259 * 185.09764 * 13 2 1 15 15 C 1.53302 * 109.50716 * 64.99663 * 13 2 1 16 16 N 1.47157 * 108.37979 * 187.77613 * 15 13 2 17 17 C 1.34779 * 120.98041 * 230.55793 * 16 15 13 18 18 O 1.21520 * 119.99902 * 355.90344 * 17 16 15 19 19 C 1.48066 * 119.99684 * 175.89756 * 17 16 15 20 20 C 1.39871 * 120.93348 * 52.22433 * 19 17 16 21 21 C 1.38089 * 119.01773 * 179.97438 * 20 19 17 22 22 N 1.31837 * 120.94256 * 0.02562 * 21 20 19 23 23 C 1.31755 * 122.07416 * 359.97438 * 22 21 20 24 24 C 1.38355 * 120.87187 * 359.73520 * 23 22 21 25 25 Cl 1.73600 * 120.52531 * 180.26184 * 24 23 22 26 26 C 1.47153 * 118.03699 * 50.53769 * 16 15 13 27 27 C 1.53294 * 108.38438 * 309.46445 * 26 16 15 28 28 O 1.42960 * 109.22380 * 52.29951 * 27 26 16 29 29 H 1.09000 * 109.47077 * 59.99971 * 1 2 3 30 30 H 1.09000 * 109.46706 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47110 * 300.00131 * 1 2 3 32 32 H 0.97000 * 119.99874 * 95.00251 * 4 2 1 33 33 H 0.96999 * 120.00266 * 179.97438 * 8 7 5 34 34 H 1.08993 * 109.68436 * 307.49895 * 15 13 2 35 35 H 1.08998 * 109.67887 * 68.05777 * 15 13 2 36 36 H 1.07999 * 120.49116 * 359.97438 * 20 19 17 37 37 H 1.08003 * 119.52555 * 180.02562 * 21 20 19 38 38 H 1.08003 * 119.56695 * 179.97438 * 23 22 21 39 39 H 1.08998 * 109.67943 * 69.18745 * 26 16 15 40 40 H 1.09002 * 109.67927 * 189.74467 * 26 16 15 41 41 H 1.08995 * 109.51719 * 172.22685 * 27 26 16 42 42 H 1.09007 * 109.51520 * 292.32932 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1545 -0.0061 2.3744 6 1 1.9014 1.0428 2.4218 7 6 2.6167 -0.6606 3.5079 8 7 2.9246 -1.9390 3.4502 9 14 2.8017 0.2731 5.1153 10 1 1.4823 0.8156 5.5273 11 1 3.3096 -0.6456 6.1656 12 1 3.7610 1.3915 4.9305 13 6 2.0401 -0.7212 -1.2492 14 1 3.1262 -0.8013 -1.2054 15 6 1.6349 0.0698 -2.4983 16 7 1.9698 -0.7334 -3.6851 17 6 2.6772 -0.2050 -4.7034 18 8 2.9843 0.9706 -4.6841 19 6 3.0801 -1.0570 -5.8454 20 6 2.1386 -1.8294 -6.5335 21 6 2.5578 -2.6093 -7.5931 22 7 3.8244 -2.6327 -7.9581 23 6 4.7444 -1.9215 -7.3386 24 6 4.4124 -1.1075 -6.2703 25 17 5.6307 -0.1690 -5.4649 26 6 1.5099 -2.1305 -3.7269 27 6 1.9210 -2.8143 -2.4180 28 8 1.4659 -2.0289 -1.3135 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2491 -1.6317 1.1527 33 1 3.2479 -2.3962 4.2421 34 1 0.5628 0.2648 -2.4776 35 1 2.1798 1.0134 -2.5280 36 1 1.0993 -1.8160 -6.2404 37 1 1.8378 -3.2086 -8.1305 38 1 5.7706 -1.9716 -7.6716 39 1 0.4251 -2.1570 -3.8299 40 1 1.9719 -2.6440 -4.5701 41 1 1.4722 -3.8063 -2.3687 42 1 3.0067 -2.9036 -2.3792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570992338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:37 Heat of formation + Delta-G solvation = -18.063977 kcal Electronic energy + Delta-G solvation = -27435.644730 eV Core-core repulsion = 23442.827701 eV Total energy + Delta-G solvation = -3992.817028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28562 -39.95484 -38.43758 -36.98832 -35.64724 -34.71669 -33.27915 -32.40988 -31.62618 -30.34189 -28.60085 -27.52015 -25.37446 -24.65538 -24.00881 -23.45827 -22.34765 -20.18068 -19.68101 -18.17212 -17.37000 -17.21586 -16.97364 -16.55408 -16.14874 -15.62986 -15.43920 -15.14956 -14.64087 -14.57706 -14.54354 -14.42798 -13.96747 -13.41100 -13.33350 -12.94303 -12.64953 -12.56995 -12.41776 -12.28575 -12.06184 -11.55625 -11.40208 -11.18382 -10.87063 -10.75383 -10.73135 -10.57850 -10.31649 -10.28155 -10.07662 -9.90678 -9.81460 -9.66621 -9.47125 -8.90427 -8.64315 -6.95072 -5.74397 -3.03423 0.20524 0.35455 1.59575 2.24414 2.54017 3.09457 3.45148 3.49584 3.50427 3.80041 3.84580 3.88844 4.12592 4.25024 4.54443 4.57871 4.65774 4.76031 4.93105 4.97693 5.02232 5.11445 5.23017 5.29048 5.35036 5.57326 5.59059 5.63310 5.72822 5.83671 5.90022 5.94780 6.10754 6.25203 6.42531 6.61593 6.79126 6.98888 7.13384 7.23011 7.39982 7.70319 7.73761 8.43677 9.55573 10.12539 10.49109 11.47925 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.002783 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.195780 B =10059.167656 C =10519.449405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.075 3.925 14 H 0.065 0.935 15 C 0.084 3.916 16 N -0.601 5.601 17 C 0.558 3.442 18 O -0.509 6.509 19 C -0.069 4.069 20 C -0.135 4.135 21 C 0.102 3.898 22 N -0.458 5.458 23 C 0.116 3.884 24 C -0.053 4.053 25 Cl -0.026 7.026 26 C 0.063 3.937 27 C 0.046 3.954 28 O -0.356 6.356 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.389 0.611 33 H 0.255 0.745 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.152 0.848 37 H 0.171 0.829 38 H 0.173 0.827 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 -2.960 -24.640 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.016 3.984 14 H 0.083 0.917 15 C -0.038 4.038 16 N -0.335 5.335 17 C 0.344 3.656 18 O -0.384 6.384 19 C -0.081 4.081 20 C -0.156 4.156 21 C -0.055 4.055 22 N -0.167 5.167 23 C -0.042 4.042 24 C -0.083 4.083 25 Cl 0.004 6.996 26 C -0.060 4.060 27 C -0.032 4.032 28 O -0.274 6.274 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.223 0.777 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.169 0.831 37 H 0.188 0.812 38 H 0.190 0.810 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.122 -2.700 -24.939 25.110 hybrid contribution 0.151 0.724 1.451 1.628 sum -0.971 -1.976 -23.489 23.592 Atomic orbital electron populations 1.22418 0.98602 1.01639 0.99579 1.20192 0.92873 0.94611 0.84878 0.92245 1.42339 1.77863 1.10890 1.04939 1.19199 1.36823 0.93741 0.87413 0.91209 1.24735 1.02135 0.95939 0.98016 1.69664 1.50738 1.08555 1.28940 0.86282 0.77786 0.78606 0.83590 1.21269 1.21728 1.21287 1.23009 0.97737 0.83027 0.94625 0.91739 1.22597 1.02304 0.95765 0.83156 1.48078 1.53620 1.13084 1.18685 1.18014 0.78503 0.87132 0.81945 1.90846 1.54323 1.15346 1.77903 1.20312 0.92959 0.97438 0.97412 1.22439 1.00788 0.95824 0.96527 1.22896 0.92782 0.96149 0.93654 1.67713 1.02062 1.19122 1.27785 1.22869 1.00221 0.90903 0.90246 1.22224 0.90529 0.98097 0.97465 1.98447 1.52618 1.70563 1.78021 1.22784 1.00939 0.81682 1.00569 1.22899 0.99656 0.95273 0.85383 1.88117 1.67404 1.25843 1.45994 0.94690 0.92411 0.92825 0.77667 0.93497 0.89632 0.87960 0.83058 0.81182 0.81029 0.89786 0.89043 0.87645 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.06 37.16 0.34 -2.57 16 2 C 0.19 3.63 2.77 -67.93 -0.19 3.44 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.72 -18.05 5.10 -53.42 -0.27 -18.32 16 5 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 9 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 C 0.08 1.25 2.61 -26.57 -0.07 1.18 16 14 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 15 C 0.08 1.16 5.81 -3.53 -0.02 1.14 16 16 N -0.60 -7.31 3.02 -173.30 -0.52 -7.84 16 17 C 0.56 7.29 6.79 -12.23 -0.08 7.21 16 18 O -0.51 -8.31 15.65 5.35 0.08 -8.23 16 19 C -0.07 -0.72 4.96 -104.62 -0.52 -1.24 16 20 C -0.14 -0.97 7.56 -39.03 -0.30 -1.26 16 21 C 0.10 0.66 11.17 -17.60 -0.20 0.46 16 22 N -0.46 -3.88 10.33 -13.27 -0.14 -4.01 16 23 C 0.12 0.98 10.99 -17.54 -0.19 0.79 16 24 C -0.05 -0.55 6.37 -38.90 -0.25 -0.80 16 25 Cl -0.03 -0.30 27.49 -51.86 -1.43 -1.72 16 26 C 0.06 0.59 5.64 -3.53 -0.02 0.57 16 27 C 0.05 0.54 6.98 37.31 0.26 0.80 16 28 O -0.36 -5.76 9.24 -35.23 -0.33 -6.08 16 29 H 0.03 0.51 6.42 -51.93 -0.33 0.18 16 30 H 0.06 1.09 7.55 -51.93 -0.39 0.69 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.39 10.55 7.59 -40.82 -0.31 10.24 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 34 H 0.09 1.11 6.27 -51.93 -0.33 0.78 16 35 H 0.10 1.51 7.11 -51.93 -0.37 1.14 16 36 H 0.15 0.74 7.30 -52.49 -0.38 0.36 16 37 H 0.17 0.54 8.06 -52.48 -0.42 0.11 16 38 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.67 4.87 -51.93 -0.25 0.41 16 41 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -33.82 359.06 -8.26 -42.08 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.29 Total: 6.32 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.48 Total: 2.47 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.21 Total: -57.67 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.24 Total: -14.31 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.43 Total: -1.72 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.82 -8.26 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570992338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.020 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds