Wall clock time and date at job start Tue Mar 31 2020 22:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.78090 * 2 1 4 4 C 1.53236 * 109.62979 * 239.51385 * 2 1 3 5 5 N 1.46890 * 109.34210 * 186.45935 * 4 2 1 6 6 C 1.38484 * 111.00535 * 187.25159 * 5 4 2 7 7 N 1.32612 * 119.53924 * 297.75507 * 6 5 4 8 8 C 1.31649 * 121.65648 * 179.97438 * 7 6 5 9 9 C 1.39639 * 120.53319 * 0.25330 * 8 7 6 10 10 C 1.47404 * 120.47530 * 179.74268 * 9 8 7 11 11 O 1.21518 * 119.99366 * 180.02562 * 10 9 8 12 12 O 1.34751 * 120.00124 * 0.02562 * 10 9 8 13 13 C 1.40384 * 119.04438 * 359.47682 * 9 8 7 14 14 C 1.36955 * 118.47660 * 0.51298 * 13 9 8 15 15 Cl 1.73598 * 120.31532 * 179.77442 * 14 13 9 16 16 C 1.46900 * 111.26878 * 63.09986 * 5 4 2 17 17 C 1.53234 * 109.34300 * 296.89785 * 16 5 4 18 18 H 1.09000 * 109.62951 * 294.12161 * 17 16 5 19 19 C 1.53002 * 109.78823 * 173.63157 * 17 16 5 20 20 N 1.47079 * 109.62673 * 120.47999 * 2 1 3 21 21 C 1.36934 * 120.88464 * 350.87807 * 20 2 1 22 22 H 1.07997 * 120.00194 * 126.37958 * 21 20 2 23 23 C 1.38818 * 119.99719 * 306.37732 * 21 20 2 24 24 N 1.31622 * 120.00025 * 343.19322 * 23 21 20 25 25 Si 1.86798 * 119.99956 * 163.19221 * 23 21 20 26 26 H 1.48501 * 109.47268 * 89.99697 * 25 23 21 27 27 H 1.48499 * 109.47175 * 210.00212 * 25 23 21 28 28 H 1.48507 * 109.46998 * 330.00176 * 25 23 21 29 29 H 1.09005 * 109.47211 * 180.48479 * 1 2 3 30 30 H 1.09003 * 109.47329 * 300.48767 * 1 2 3 31 31 H 1.09004 * 109.47014 * 60.48912 * 1 2 3 32 32 H 1.08998 * 109.49492 * 66.49707 * 4 2 1 33 33 H 1.09006 * 109.49142 * 306.41804 * 4 2 1 34 34 H 1.07999 * 119.73192 * 179.97438 * 8 7 6 35 35 H 0.96705 * 116.99791 * 179.97438 * 12 10 9 36 36 H 1.07999 * 120.76057 * 180.24055 * 13 9 8 37 37 H 1.09008 * 109.49108 * 56.85906 * 16 5 4 38 38 H 1.09006 * 109.49401 * 176.93207 * 16 5 4 39 39 H 1.08994 * 109.47340 * 298.83795 * 19 17 16 40 40 H 1.09001 * 109.47261 * 58.84258 * 19 17 16 41 41 H 1.09002 * 109.46722 * 178.83864 * 19 17 16 42 42 H 0.96999 * 119.99723 * 175.40741 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7322 -1.2438 5 7 3.5054 -0.8644 -1.1609 6 6 4.0253 -1.3751 -2.3384 7 7 3.6694 -2.5885 -2.7381 8 6 4.1376 -3.1145 -3.8504 9 6 5.0367 -2.4035 -4.6478 10 6 5.5645 -2.9960 -5.8901 11 8 6.3469 -2.3696 -6.5773 12 8 5.1793 -4.2320 -6.2638 13 6 5.4265 -1.1142 -4.2523 14 6 4.9150 -0.6058 -3.0880 15 17 5.3692 0.9812 -2.5507 16 6 3.9015 -1.6869 -0.0101 17 6 3.4629 -0.9938 1.2843 18 1 4.0176 -0.0637 1.4077 19 6 3.7273 -1.9124 2.4790 20 7 2.0240 -0.7027 1.1939 21 6 1.1672 -1.0756 2.1948 22 1 1.1416 -2.1022 2.5292 23 6 0.3316 -0.1341 2.7798 24 7 0.5769 1.1498 2.6255 25 14 -1.1411 -0.6892 3.7860 26 1 -0.7383 -0.8494 5.2063 27 1 -2.2188 0.3277 3.6886 28 1 -1.6370 -1.9876 3.2628 29 1 -0.3634 -1.0277 0.0087 30 1 -0.3634 0.5214 0.8856 31 1 -0.3633 0.5062 -0.8944 32 1 1.7810 -0.1639 -2.1357 33 1 1.5924 -1.7226 -1.2961 34 1 3.8271 -4.1057 -4.1463 35 1 5.5519 -4.5781 -7.0863 36 1 6.1173 -0.5382 -4.8500 37 1 3.4233 -2.6640 -0.0796 38 1 4.9845 -1.8111 -0.0073 39 1 3.1487 -2.8293 2.3674 40 1 4.7890 -2.1556 2.5223 41 1 3.4327 -1.4064 3.3984 42 1 -0.0429 1.8077 2.9774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594582855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:33 Heat of formation + Delta-G solvation = -14.591281 kcal Electronic energy + Delta-G solvation = -27783.555408 eV Core-core repulsion = 23790.888967 eV Total energy + Delta-G solvation = -3992.666441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.18809 -40.07060 -38.18885 -36.57674 -36.47347 -35.11452 -32.88708 -32.62590 -31.66710 -30.36178 -27.66378 -26.09835 -25.81676 -24.35326 -24.02411 -22.58096 -21.32658 -20.33506 -19.18636 -18.67916 -17.88803 -16.95654 -16.85184 -16.08019 -15.99737 -15.31764 -15.20104 -14.93434 -14.34268 -14.15851 -13.77058 -13.71632 -13.62060 -13.26648 -12.88386 -12.83795 -12.09998 -11.99973 -11.95588 -11.61900 -11.42029 -11.24343 -11.14068 -11.09040 -10.91280 -10.76553 -10.51610 -10.46444 -10.27956 -10.12138 -9.95023 -9.88557 -9.77559 -9.48055 -8.98913 -8.36652 -8.07686 -6.36654 -5.71652 -3.56146 0.08545 0.80104 1.95630 2.12603 2.64790 3.31707 3.34824 3.40702 3.43600 3.63296 4.22343 4.40880 4.43556 4.55867 4.76990 4.91568 5.21542 5.28796 5.37296 5.56722 5.72599 5.80759 5.88652 5.98797 6.04781 6.13632 6.18924 6.28589 6.40035 6.43780 6.56804 6.67331 6.80299 6.92635 7.09833 7.13788 7.36133 7.42945 7.44601 7.54733 7.57096 7.72559 7.88554 8.61657 9.20582 9.72801 10.51975 11.18121 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.003166 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.534508 B = 8842.072351 C = 9229.926695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.202 3.798 3 H 0.040 0.960 4 C 0.050 3.950 5 N -0.485 5.485 6 C 0.361 3.639 7 N -0.501 5.501 8 C 0.177 3.823 9 C -0.193 4.193 10 C 0.540 3.460 11 O -0.512 6.512 12 O -0.509 6.509 13 C -0.003 4.003 14 C -0.078 4.078 15 Cl -0.022 7.022 16 C 0.056 3.944 17 C 0.174 3.826 18 H 0.035 0.965 19 C -0.129 4.129 20 N -0.578 5.578 21 C -0.259 4.259 22 H 0.052 0.948 23 C 0.034 3.966 24 N -0.874 5.874 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.288 1.288 28 H -0.275 1.275 29 H 0.043 0.957 30 H 0.097 0.903 31 H 0.022 0.978 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.175 0.825 35 H 0.417 0.583 36 H 0.159 0.841 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.035 0.965 41 H 0.066 0.934 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.791 -6.858 -14.574 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.096 3.904 3 H 0.058 0.942 4 C -0.077 4.077 5 N -0.208 5.208 6 C 0.132 3.868 7 N -0.213 5.213 8 C 0.017 3.983 9 C -0.197 4.197 10 C 0.383 3.617 11 O -0.402 6.402 12 O -0.322 6.322 13 C -0.030 4.030 14 C -0.109 4.109 15 Cl 0.007 6.993 16 C -0.071 4.071 17 C 0.067 3.933 18 H 0.053 0.947 19 C -0.187 4.187 20 N -0.302 5.302 21 C -0.389 4.389 22 H 0.070 0.930 23 C -0.167 4.167 24 N -0.514 5.514 25 Si 0.711 3.289 26 H -0.210 1.210 27 H -0.214 1.214 28 H -0.200 1.200 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.192 0.808 35 H 0.276 0.724 36 H 0.176 0.824 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.414 -6.216 -13.590 17.151 hybrid contribution -0.232 -0.557 -0.807 1.008 sum 8.183 -6.774 -14.397 17.892 Atomic orbital electron populations 1.22042 0.95408 1.01104 1.01778 1.20288 0.93004 0.93859 0.83258 0.94244 1.22986 0.82826 1.00760 1.01116 1.60180 1.14061 1.47739 0.98836 1.20453 0.88461 0.86361 0.91488 1.68346 1.24943 1.12385 1.15661 1.23201 0.88614 0.99020 0.87507 1.19918 1.05971 0.96693 0.97119 1.20374 0.77796 0.79019 0.84469 1.90920 1.33371 1.61898 1.53978 1.84549 1.68960 1.32070 1.46579 1.21282 0.95448 0.92994 0.93246 1.21339 1.01599 0.91361 0.96623 1.98407 1.90765 1.20360 1.89723 1.22789 0.98731 0.95136 0.90475 1.20543 0.87593 0.95213 0.89912 0.94701 1.21678 0.98087 0.99685 0.99233 1.44018 1.00519 1.68146 1.17563 1.18661 1.16390 0.91782 1.12097 0.93025 1.25545 1.00193 0.95195 0.95800 1.70143 1.34819 0.99634 1.46808 0.86667 0.83191 0.78398 0.80658 1.21006 1.21370 1.20036 0.93836 0.88433 0.95880 0.92334 0.93478 0.80834 0.72357 0.82377 0.93403 0.92222 0.93044 0.94590 0.91455 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.09 37.16 0.30 -2.91 16 2 C 0.20 4.52 3.12 -67.49 -0.21 4.31 16 3 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.05 0.96 4.69 -3.71 -0.02 0.95 16 5 N -0.48 -8.60 3.97 -172.90 -0.69 -9.28 16 6 C 0.36 5.61 5.26 -155.21 -0.82 4.80 16 7 N -0.50 -7.34 9.74 -12.10 -0.12 -7.46 16 8 C 0.18 2.01 10.79 -17.11 -0.18 1.83 16 9 C -0.19 -2.12 5.89 -104.84 -0.62 -2.74 16 10 C 0.54 5.34 8.27 34.46 0.28 5.63 16 11 O -0.51 -6.34 17.20 -19.28 -0.33 -6.67 16 12 O -0.51 -3.36 12.69 -40.63 -0.52 -3.88 16 13 C 0.00 -0.04 9.44 -39.24 -0.37 -0.41 16 14 C -0.08 -1.07 6.32 -39.59 -0.25 -1.32 16 15 Cl -0.02 -0.30 28.44 -51.86 -1.47 -1.77 16 16 C 0.06 1.02 4.70 -3.70 -0.02 1.00 16 17 C 0.17 3.63 3.65 -67.49 -0.25 3.38 16 18 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.13 -2.45 8.21 37.16 0.30 -2.15 16 20 N -0.58 -13.69 2.81 -157.01 -0.44 -14.14 16 21 C -0.26 -6.62 6.93 -15.06 -0.10 -6.72 16 22 H 0.05 1.35 7.13 -52.49 -0.37 0.97 16 23 C 0.03 0.89 3.34 -17.43 -0.06 0.84 16 24 N -0.87 -23.94 11.72 55.49 0.65 -23.29 16 25 Si 0.88 20.42 29.59 -169.99 -5.03 15.39 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.04 0.96 7.97 -51.93 -0.41 0.54 16 30 H 0.10 2.42 4.48 -51.93 -0.23 2.19 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 33 H 0.05 0.94 8.06 -51.93 -0.42 0.52 16 34 H 0.17 1.52 7.61 -52.49 -0.40 1.12 16 35 H 0.42 0.85 9.11 45.56 0.42 1.26 16 36 H 0.16 1.63 7.72 -52.49 -0.41 1.22 16 37 H 0.05 0.91 8.05 -51.92 -0.42 0.49 16 38 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 39 H 0.05 0.98 7.50 -51.93 -0.39 0.59 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.40 7.74 -51.93 -0.40 1.00 16 42 H 0.25 6.77 8.32 -40.82 -0.34 6.43 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -29.74 358.60 -9.25 -38.99 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.70 Total: 0.23 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -2.00 Total: 6.47 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.59 Total: -54.16 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.85 Total: -10.55 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.47 Total: -1.77 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.74 -9.25 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594582855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.401 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds