Wall clock time and date at job start Wed Apr 1 2020 00:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36000 * 117.00356 * 2 1 4 4 C 1.38209 * 119.97025 * 4.78063 * 3 2 1 5 5 C 1.39763 * 119.94469 * 180.02562 * 4 3 2 6 6 C 1.47494 * 120.06948 * 179.97438 * 5 4 3 7 7 O 1.21626 * 120.00512 * 215.56738 * 6 5 4 8 8 N 1.34776 * 119.99862 * 35.55978 * 6 5 4 9 9 C 1.36904 * 120.00287 * 355.94350 * 8 6 5 10 10 H 1.08007 * 119.99124 * 41.45829 * 9 8 6 11 11 C 1.39016 * 120.00309 * 221.18587 * 9 8 6 12 12 N 1.31380 * 120.00150 * 11.35305 * 11 9 8 13 13 Si 1.86797 * 119.99918 * 191.35647 * 11 9 8 14 14 H 1.48500 * 109.47510 * 94.55416 * 13 11 9 15 15 H 1.48497 * 109.47007 * 214.55198 * 13 11 9 16 16 H 1.48499 * 109.47157 * 334.55119 * 13 11 9 17 17 C 1.46506 * 120.00199 * 175.94462 * 8 6 5 18 18 C 1.52999 * 109.46742 * 276.29701 * 17 8 6 19 19 C 1.50703 * 109.46727 * 180.02562 * 18 17 8 20 20 O 1.20819 * 120.00169 * 359.97438 * 19 18 17 21 21 O 1.34235 * 119.99654 * 179.97438 * 19 18 17 22 22 C 1.39768 * 119.87152 * 0.24787 * 5 4 3 23 23 C 1.38218 * 119.93862 * 359.49529 * 22 5 4 24 24 O 1.36003 * 119.96979 * 180.27610 * 23 22 5 25 25 C 1.42902 * 117.00095 * 0.22835 * 24 23 22 26 26 C 1.39247 * 120.05915 * 0.50612 * 23 22 5 27 27 O 1.35899 * 119.93737 * 179.72145 * 26 23 22 28 28 H 1.09004 * 109.47130 * 63.54498 * 1 2 3 29 29 H 1.08997 * 109.47143 * 183.55250 * 1 2 3 30 30 H 1.09004 * 109.46756 * 303.54897 * 1 2 3 31 31 H 1.08005 * 120.03078 * 359.97438 * 4 3 2 32 32 H 0.96996 * 120.00450 * 180.02562 * 12 11 9 33 33 H 1.08996 * 109.46905 * 36.29347 * 17 8 6 34 34 H 1.08994 * 109.46916 * 156.29619 * 17 8 6 35 35 H 1.08996 * 109.47131 * 299.99507 * 18 17 8 36 36 H 1.09001 * 109.47193 * 60.00032 * 18 17 8 37 37 H 0.96701 * 116.99732 * 179.97438 * 21 19 18 38 38 H 1.08006 * 120.03535 * 179.72844 * 22 5 4 39 39 H 1.09000 * 109.46822 * 179.97438 * 25 24 23 40 40 H 1.08995 * 109.47206 * 300.00290 * 25 24 23 41 41 H 1.09002 * 109.46568 * 60.00355 * 25 24 23 42 42 H 0.96699 * 114.00060 * 270.02120 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2970 2.3686 0.0998 5 6 1.9321 3.6136 0.0992 6 6 1.1348 4.8500 0.2050 7 8 1.4785 5.8488 -0.3979 8 7 0.0252 4.8729 0.9696 9 6 -0.4083 3.7275 1.5815 10 1 0.3039 3.0580 2.0409 11 6 -1.7656 3.4290 1.6165 12 7 -2.6086 4.1166 0.8798 13 14 -2.3908 2.0504 2.7110 14 1 -2.8332 2.6132 4.0121 15 1 -3.5353 1.3738 2.0497 16 1 -1.3011 1.0684 2.9413 17 6 -0.7172 6.1236 1.1461 18 6 -0.0729 6.9456 2.2642 19 6 -0.8369 8.2318 2.4461 20 8 -1.7977 8.4670 1.7524 21 8 -0.4499 9.1160 3.3790 22 6 3.3238 3.6851 -0.0076 23 6 4.0689 2.5247 -0.1018 24 8 5.4236 2.5933 -0.2001 25 6 6.0093 3.8968 -0.1948 26 6 3.4334 1.2857 -0.1009 27 8 4.1679 0.1466 -0.1994 28 1 -0.3633 0.4578 -0.9201 29 1 -0.3633 -1.0257 0.0637 30 1 -0.3633 0.5680 0.8565 31 1 0.2212 2.3107 0.1773 32 1 -3.5557 3.9086 0.9045 33 1 -0.6949 6.6934 0.2172 34 1 -1.7505 5.8986 1.4097 35 1 -0.0952 6.3757 3.1931 36 1 0.9605 7.1705 2.0005 37 1 -0.9709 9.9268 3.4582 38 1 3.8170 4.6459 -0.0127 39 1 7.0925 3.8087 -0.2783 40 1 5.6251 4.4712 -1.0377 41 1 5.7571 4.4046 0.7361 42 1 4.3146 -0.1495 -1.1081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607067741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:19 Heat of formation + Delta-G solvation = -225.347091 kcal Electronic energy + Delta-G solvation = -30562.263198 eV Core-core repulsion = 26087.455783 eV Total energy + Delta-G solvation = -4474.807414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.89426 -41.30810 -40.38113 -39.94834 -38.11692 -37.32709 -36.92039 -36.77599 -33.90673 -32.65571 -30.85174 -30.59721 -28.72309 -27.77142 -27.15757 -26.00222 -23.99750 -22.85304 -22.12888 -21.30388 -20.17564 -19.36313 -19.13684 -18.33023 -18.01445 -17.66406 -17.56796 -17.24168 -17.12705 -16.92569 -16.42551 -16.22258 -16.16254 -16.01555 -15.50063 -15.39525 -14.77949 -14.63207 -14.34927 -14.12880 -13.97403 -13.59817 -13.35057 -13.23929 -12.93500 -12.84316 -12.72254 -12.56971 -12.53502 -12.43372 -12.36123 -11.99126 -11.94496 -11.68166 -11.64496 -11.52396 -11.09365 -10.57469 -9.61362 -9.25597 -9.13776 -8.33319 -6.18066 -0.14561 0.36220 1.17847 1.39256 1.46903 1.56521 1.82979 1.86004 2.01823 2.30150 2.62192 2.73972 2.88848 3.01827 3.23641 3.93056 3.95733 4.02159 4.07887 4.13455 4.31499 4.38877 4.39687 4.40100 4.45179 4.48946 4.63543 4.70258 4.74018 4.78883 4.86926 5.04526 5.12480 5.30012 5.32849 5.46438 5.51265 5.58766 5.88462 6.20756 6.24206 6.34218 6.90110 6.99124 7.00841 7.39682 7.83360 8.67658 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.004843 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.792764 B = 5780.551282 C = 8042.372975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.310 6.310 3 C 0.118 3.882 4 C -0.180 4.180 5 C -0.049 4.049 6 C 0.501 3.499 7 O -0.622 6.622 8 N -0.432 5.432 9 C -0.350 4.350 10 H 0.101 0.899 11 C 0.012 3.988 12 N -0.888 5.888 13 Si 0.961 3.039 14 H -0.275 1.275 15 H -0.275 1.275 16 H -0.247 1.247 17 C 0.132 3.868 18 C -0.119 4.119 19 C 0.496 3.504 20 O -0.548 6.548 21 O -0.507 6.507 22 C -0.188 4.188 23 C 0.127 3.873 24 O -0.313 6.313 25 C 0.017 3.983 26 C 0.048 3.952 27 O -0.481 6.481 28 H 0.059 0.941 29 H 0.131 0.869 30 H 0.051 0.949 31 H 0.162 0.838 32 H 0.275 0.725 33 H 0.036 0.964 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.427 0.573 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.277 -3.458 2.140 9.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.224 6.224 3 C 0.072 3.928 4 C -0.199 4.199 5 C -0.053 4.053 6 C 0.292 3.708 7 O -0.510 6.510 8 N -0.148 5.148 9 C -0.477 4.477 10 H 0.118 0.882 11 C -0.192 4.192 12 N -0.524 5.524 13 Si 0.784 3.216 14 H -0.201 1.201 15 H -0.200 1.200 16 H -0.170 1.170 17 C 0.008 3.992 18 C -0.158 4.158 19 C 0.339 3.661 20 O -0.439 6.439 21 O -0.321 6.321 22 C -0.208 4.208 23 C 0.080 3.920 24 O -0.227 6.227 25 C -0.078 4.078 26 C 0.001 3.999 27 O -0.291 6.291 28 H 0.078 0.922 29 H 0.149 0.851 30 H 0.070 0.930 31 H 0.179 0.821 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.289 0.711 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.395 -3.559 2.197 9.379 hybrid contribution -1.390 0.750 -0.146 1.586 sum 7.005 -2.809 2.052 7.821 Atomic orbital electron populations 1.23408 0.76857 1.05565 1.02082 1.86055 1.22661 1.25098 1.88540 1.18968 0.90760 0.85300 0.97785 1.21996 1.02755 0.90177 1.04980 1.19466 0.93191 0.93097 0.99508 1.18697 0.84108 0.87736 0.80269 1.90613 1.73799 1.37168 1.49457 1.43423 1.22031 1.08551 1.40786 1.19775 0.92672 1.00352 1.34937 0.88150 1.26165 0.96174 1.00005 0.96873 1.69919 1.04409 1.41139 1.36909 0.85396 0.78976 0.78797 0.78410 1.20076 1.19957 1.17027 1.21046 0.98370 0.84255 0.95537 1.21640 1.00454 0.90776 1.02930 1.23300 0.81743 0.85203 0.75813 1.90708 1.29150 1.77738 1.46276 1.84503 1.59776 1.33379 1.54422 1.21096 0.92817 0.98126 1.08747 1.18676 0.83682 0.91894 0.97705 1.86083 1.15610 1.32842 1.88138 1.23403 1.00263 0.81973 1.02122 1.16869 0.86267 0.84847 1.11916 1.84815 1.72062 1.38616 1.33615 0.92197 0.85062 0.93032 0.82128 0.91450 0.94552 0.87924 0.86384 0.88051 0.71115 0.83956 0.85044 0.92181 0.92281 0.74438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.86 113.37 1.12 1.54 16 2 O -0.31 -10.13 10.27 -79.45 -0.82 -10.94 16 3 C 0.12 4.24 6.68 22.51 0.15 4.39 16 4 C -0.18 -7.16 6.77 22.63 0.15 -7.01 16 5 C -0.05 -2.09 5.45 -20.10 -0.11 -2.20 16 6 C 0.50 24.23 7.31 86.68 0.63 24.86 16 7 O -0.62 -32.60 16.48 -4.11 -0.07 -32.67 16 8 N -0.43 -20.75 2.52 -639.17 -1.61 -22.36 16 9 C -0.35 -16.17 6.17 84.09 0.52 -15.65 16 10 H 0.10 4.52 6.37 -2.91 -0.02 4.51 16 11 C 0.01 0.55 5.09 84.95 0.43 0.98 16 12 N -0.89 -44.37 11.21 21.67 0.24 -44.13 16 13 Si 0.96 35.46 28.76 68.60 1.97 37.44 16 14 H -0.28 -10.25 7.11 99.48 0.71 -9.54 16 15 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 16 H -0.25 -8.46 6.94 99.48 0.69 -7.77 16 17 C 0.13 6.24 4.16 86.38 0.36 6.59 16 18 C -0.12 -4.53 6.09 29.85 0.18 -4.34 16 19 C 0.50 17.37 8.33 71.24 0.59 17.96 16 20 O -0.55 -23.00 16.74 21.98 0.37 -22.63 16 21 O -0.51 -12.90 13.42 -51.46 -0.69 -13.59 16 22 C -0.19 -6.90 8.59 22.64 0.19 -6.70 16 23 C 0.13 4.25 6.69 22.51 0.15 4.40 16 24 O -0.31 -9.01 10.27 -79.49 -0.82 -9.83 16 25 C 0.02 0.34 9.81 113.37 1.11 1.45 16 26 C 0.05 1.63 6.74 22.76 0.15 1.78 16 27 O -0.48 -14.30 13.04 -68.13 -0.89 -15.19 16 28 H 0.06 1.63 8.04 -2.39 -0.02 1.61 16 29 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.05 1.58 6.22 -2.38 -0.01 1.57 16 31 H 0.16 6.78 3.91 -2.91 -0.01 6.77 16 32 H 0.28 13.07 8.31 -92.71 -0.77 12.30 16 33 H 0.04 1.89 7.52 -2.39 -0.02 1.87 16 34 H 0.10 5.27 5.46 -2.39 -0.01 5.25 16 35 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 36 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 37 H 0.43 6.53 9.10 -74.06 -0.67 5.86 16 38 H 0.14 4.93 6.22 -2.91 -0.02 4.91 16 39 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 1.23 7.65 -2.39 -0.02 1.21 16 41 H 0.06 1.20 7.67 -2.39 -0.02 1.19 16 42 H 0.40 8.04 9.06 -74.06 -0.67 7.37 16 Total: -1.00 -68.80 359.69 3.10 -65.70 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: -0.24 Total: 40.15 kcal Atomic # 6 Polarization: 22.42 SS G_CDS: 5.64 Total: 28.06 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: -1.37 Total: -66.49 kcal Atomic # 8 Polarization: -101.94 SS G_CDS: -2.91 Total: -104.85 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 1.97 Total: 37.44 kcal Total: -68.80 3.10 -65.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607067741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.646 kcal (2) G-P(sol) polarization free energy of solvation -68.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds