Wall clock time and date at job start Tue Mar 31 2020 23:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34811 * 117.00094 * 2 1 4 4 O 1.21531 * 120.00182 * 0.02562 * 3 2 1 5 5 C 1.47178 * 120.00215 * 179.97438 * 3 2 1 6 6 C 1.36639 * 125.80884 * 179.97438 * 5 3 2 7 7 C 1.40033 * 106.92716 * 180.02562 * 6 5 3 8 8 C 1.36637 * 106.92547 * 359.97438 * 7 6 5 9 9 C 1.47175 * 125.80210 * 179.97438 * 8 7 6 10 10 O 1.21527 * 120.00366 * 0.02562 * 9 8 7 11 11 O 1.34823 * 119.99501 * 180.02562 * 9 8 7 12 12 C 1.45206 * 116.99317 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47146 * 329.99254 * 12 11 9 14 14 C 1.52997 * 109.47226 * 90.00227 * 12 11 9 15 15 C 1.50706 * 109.46448 * 210.00019 * 12 11 9 16 16 O 1.21283 * 120.00236 * 354.99931 * 15 12 11 17 17 N 1.34774 * 119.99861 * 175.00107 * 15 12 11 18 18 C 1.46507 * 120.00108 * 359.97438 * 17 15 12 19 19 C 1.46496 * 120.00367 * 180.02562 * 17 15 12 20 20 C 1.50695 * 109.47370 * 89.99805 * 19 17 15 21 21 H 1.08005 * 120.00163 * 0.02562 * 20 19 17 22 22 C 1.37882 * 120.00369 * 180.02562 * 20 19 17 23 23 N 1.31512 * 119.99460 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00346 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47016 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47330 * 119.99488 * 24 22 20 27 27 H 1.48505 * 109.46750 * 239.99831 * 24 22 20 28 28 O 1.34552 * 108.38924 * 0.23180 * 8 7 6 29 29 H 1.09004 * 109.47300 * 300.00107 * 1 2 3 30 30 H 1.08999 * 109.47038 * 59.99928 * 1 2 3 31 31 H 1.08997 * 109.47296 * 179.97438 * 1 2 3 32 32 H 1.07995 * 126.53707 * 0.04757 * 6 5 3 33 33 H 1.07995 * 126.53279 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47153 * 299.99431 * 14 12 11 35 35 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 36 36 H 1.09004 * 109.47261 * 59.99603 * 14 12 11 37 37 H 1.09002 * 109.47123 * 89.99538 * 18 17 15 38 38 H 1.08997 * 109.47369 * 209.99929 * 18 17 15 39 39 H 1.09002 * 109.47042 * 330.00239 * 18 17 15 40 40 H 1.09001 * 109.47223 * 209.99860 * 19 17 15 41 41 H 1.09007 * 109.46674 * 329.99720 * 19 17 15 42 42 H 0.96998 * 120.00028 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4021 2.2204 0.0005 5 6 3.5337 1.2782 0.0006 6 6 4.2741 2.4267 0.0001 7 6 5.6210 2.0435 0.0004 8 6 5.6459 0.6773 0.0015 9 6 6.8550 -0.1617 0.0016 10 8 7.9543 0.3565 0.0010 11 8 6.7431 -1.5053 0.0022 12 6 7.9778 -2.2695 0.0029 13 1 8.7552 -1.7043 -0.5112 14 6 8.4112 -2.5372 1.4455 15 6 7.7573 -3.5805 -0.7070 16 8 6.6467 -3.8846 -1.0880 17 7 8.7942 -4.4150 -0.9184 18 6 10.1359 -4.0475 -0.4586 19 6 8.5801 -5.6892 -1.6089 20 6 8.7617 -5.4936 -3.0920 21 1 9.0120 -4.5178 -3.4814 22 6 8.6082 -6.5603 -3.9520 23 7 8.3040 -7.7486 -3.4779 24 14 8.8340 -6.3180 -5.7904 25 1 9.1708 -4.8979 -6.0648 26 1 9.9344 -7.1903 -6.2733 27 1 7.5755 -6.6728 -6.4946 28 8 4.3770 0.2297 -0.0032 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.8931 3.4372 0.0000 33 1 6.4767 2.7022 0.0005 34 1 8.5706 -1.5890 1.9589 35 1 9.3378 -3.1113 1.4459 36 1 7.6337 -3.1025 1.9596 37 1 10.2847 -4.4133 0.5573 38 1 10.8807 -4.4931 -1.1180 39 1 10.2404 -2.9626 -0.4731 40 1 9.3006 -6.4234 -1.2484 41 1 7.5689 -6.0446 -1.4103 42 1 8.1964 -8.4992 -4.0828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649723358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:50 Heat of formation + Delta-G solvation = -166.152072 kcal Electronic energy + Delta-G solvation = -28954.976254 eV Core-core repulsion = 24482.735729 eV Total energy + Delta-G solvation = -4472.240526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.33300 -40.80428 -40.55043 -38.99131 -37.01980 -36.68355 -34.97287 -33.69201 -32.95498 -31.88719 -31.05064 -28.31437 -27.74371 -26.27287 -25.69454 -24.33838 -23.16418 -22.24929 -21.60473 -20.83894 -19.24460 -18.93011 -18.38516 -17.49440 -17.40129 -16.95757 -16.57404 -16.56321 -16.15223 -15.77258 -15.40714 -14.66228 -14.62077 -14.28409 -13.95232 -13.71549 -13.67798 -13.60282 -13.52824 -13.36983 -12.98517 -12.57702 -12.46164 -12.25032 -12.16069 -11.77428 -11.52979 -11.43954 -11.26272 -11.23883 -11.14401 -10.94336 -10.84836 -10.66993 -10.62435 -10.19559 -9.66250 -9.43657 -8.97714 -8.47433 -7.77329 -6.08368 -4.13303 -0.05705 1.19782 1.57342 2.05241 2.33208 2.47235 2.61087 3.19836 3.28296 3.36267 3.40574 3.74400 4.16890 4.21975 4.40798 4.43208 4.71552 4.72658 4.82179 4.85432 4.87848 4.93287 4.98542 5.16595 5.24002 5.26528 5.42764 5.56399 5.57468 5.61079 5.73072 5.79627 5.91522 6.08148 6.12601 6.17691 6.93021 7.11245 7.32513 7.35656 7.44377 7.87594 8.17050 8.23678 8.80360 8.95424 9.51937 10.99866 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.002664 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.314512 B =10508.143853 C =11752.680175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.340 6.340 3 C 0.554 3.446 4 O -0.480 6.480 5 C -0.023 4.023 6 C -0.120 4.120 7 C -0.126 4.126 8 C -0.004 4.004 9 C 0.549 3.451 10 O -0.477 6.477 11 O -0.309 6.309 12 C 0.069 3.931 13 H 0.111 0.889 14 C -0.172 4.172 15 C 0.508 3.492 16 O -0.516 6.516 17 N -0.595 5.595 18 C 0.075 3.925 19 C 0.246 3.754 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 O -0.118 6.118 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.046 0.954 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 18.817 11.661 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.255 6.255 3 C 0.397 3.603 4 O -0.369 6.369 5 C -0.076 4.076 6 C -0.140 4.140 7 C -0.146 4.146 8 C -0.057 4.057 9 C 0.392 3.608 10 O -0.366 6.366 11 O -0.224 6.224 12 C 0.011 3.989 13 H 0.128 0.872 14 C -0.229 4.229 15 C 0.292 3.708 16 O -0.391 6.391 17 N -0.328 5.328 18 C -0.069 4.069 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 O -0.012 6.012 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.195 0.805 33 H 0.197 0.803 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.988 18.492 11.391 22.815 hybrid contribution 0.179 0.220 -1.098 1.134 sum -6.809 18.711 10.293 22.415 Atomic orbital electron populations 1.23447 0.74692 1.04686 1.02910 1.86705 1.24454 1.31077 1.83311 1.19247 0.85176 0.82469 0.73370 1.90944 1.64057 1.35957 1.45909 1.21157 0.88403 0.86224 1.11792 1.21997 0.91597 0.99339 1.01023 1.22009 0.98419 0.92545 1.01605 1.21235 0.81777 0.92598 1.10087 1.19290 0.86075 0.81919 0.73490 1.90929 1.25175 1.74506 1.46018 1.86775 1.36400 1.16853 1.82345 1.22818 0.84725 0.92190 0.99144 0.87186 1.22311 1.03595 1.03549 0.93424 1.19684 0.85789 0.84580 0.80769 1.90732 1.23378 1.74612 1.50351 1.48071 1.06370 1.21540 1.56850 1.21863 0.85672 0.99890 0.99437 1.19375 0.98693 0.77843 0.91322 1.21457 1.48206 0.95597 0.91513 0.92348 1.24934 0.94935 0.95005 0.99185 1.69936 1.47927 1.00163 1.35222 0.86427 0.77794 0.78198 0.84924 1.19779 1.20909 1.20810 1.84310 1.14543 1.33972 1.68395 0.91355 0.91300 0.87216 0.80488 0.80346 0.91108 0.88921 0.90698 0.93031 0.90187 0.92332 0.94502 0.93582 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.34 -3.79 10.58 -42.21 -0.45 -4.23 16 3 C 0.55 6.30 7.95 34.36 0.27 6.57 16 4 O -0.48 -5.77 16.65 -19.29 -0.32 -6.09 16 5 C -0.02 -0.26 7.19 -36.53 -0.26 -0.52 16 6 C -0.12 -1.06 10.60 -39.49 -0.42 -1.48 16 7 C -0.13 -1.19 10.60 -39.49 -0.42 -1.60 16 8 C 0.00 -0.05 7.19 -36.53 -0.26 -0.31 16 9 C 0.55 8.01 7.93 34.36 0.27 8.28 16 10 O -0.48 -7.02 16.12 -19.28 -0.31 -7.33 16 11 O -0.31 -5.28 9.43 -48.13 -0.45 -5.73 16 12 C 0.07 1.12 2.17 -27.88 -0.06 1.06 16 13 H 0.11 1.64 6.15 -51.93 -0.32 1.32 16 14 C -0.17 -2.11 9.28 37.16 0.34 -1.77 16 15 C 0.51 10.75 7.10 -10.98 -0.08 10.67 16 16 O -0.52 -13.42 16.09 -14.05 -0.23 -13.65 16 17 N -0.59 -12.35 2.86 -182.95 -0.52 -12.87 16 18 C 0.08 1.12 8.92 59.85 0.53 1.65 16 19 C 0.25 6.33 5.16 -5.20 -0.03 6.31 16 20 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 21 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 24 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 O -0.12 -1.61 10.68 1.26 0.01 -1.60 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.99 5.12 -51.93 -0.27 0.72 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.63 7.02 -51.93 -0.36 0.26 16 38 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 39 H 0.06 0.72 6.08 -51.93 -0.32 0.41 16 40 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.05 1.34 7.42 -51.92 -0.39 0.95 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -35.89 376.91 -5.32 -41.22 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -4.99 Total: -3.21 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 0.54 Total: 16.63 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.21 Total: -38.46 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.75 Total: -38.64 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.89 -5.32 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649723358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.937 kcal (2) G-P(sol) polarization free energy of solvation -35.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds