Wall clock time and date at job start Tue Mar 31 2020 23:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46811 * 2 1 4 4 C 1.53002 * 109.47208 * 119.99347 * 2 1 3 5 5 N 1.46502 * 109.47495 * 175.00070 * 4 2 1 6 6 C 1.36934 * 120.00303 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99568 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99835 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00071 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99670 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47104 * 60.00598 * 10 8 6 12 12 H 1.48501 * 109.46944 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47489 * 300.00047 * 10 8 6 14 14 N 1.46492 * 109.47293 * 239.99892 * 2 1 3 15 15 C 1.46506 * 120.00150 * 299.99777 * 14 2 1 16 16 C 1.34780 * 120.00382 * 120.00020 * 14 2 1 17 17 O 1.21356 * 119.99752 * 354.38225 * 16 14 2 18 18 C 1.49345 * 120.00225 * 174.65195 * 16 14 2 19 19 O 1.21382 * 119.99934 * 0.32534 * 18 16 14 20 20 N 1.34774 * 119.99896 * 180.31862 * 18 16 14 21 21 C 1.39768 * 119.99712 * 174.37734 * 20 18 16 22 22 C 1.38922 * 120.06449 * 330.68173 * 21 20 18 23 23 C 1.38091 * 119.93688 * 179.79158 * 22 21 20 24 24 C 1.38404 * 120.06178 * 0.46218 * 23 22 21 25 25 Cl 1.73595 * 119.93503 * 179.76513 * 24 23 22 26 26 C 1.38401 * 120.12605 * 359.79197 * 24 23 22 27 27 C 1.38092 * 120.06015 * 359.97438 * 26 24 23 28 28 H 1.08997 * 109.47048 * 60.00354 * 1 2 3 29 29 H 1.09004 * 109.46974 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47548 * 300.00127 * 1 2 3 31 31 H 1.09004 * 109.47368 * 295.00548 * 4 2 1 32 32 H 1.09000 * 109.46657 * 55.00398 * 4 2 1 33 33 H 0.97005 * 119.99665 * 0.02562 * 5 4 2 34 34 H 0.97008 * 119.99888 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.46815 * 263.76318 * 15 14 2 36 36 H 1.09003 * 109.46523 * 23.75501 * 15 14 2 37 37 H 1.08990 * 109.47166 * 143.75357 * 15 14 2 38 38 H 0.97000 * 120.00189 * 354.37763 * 20 18 16 39 39 H 1.07999 * 120.03145 * 0.02562 * 22 21 20 40 40 H 1.07990 * 119.97125 * 180.21188 * 23 22 21 41 41 H 1.07999 * 119.97010 * 179.97438 * 26 24 23 42 42 H 1.08006 * 120.02725 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.1838 -1.4386 2.2069 7 1 3.6466 -1.8444 3.0514 8 6 5.5672 -1.5387 2.1511 9 7 6.2217 -1.0445 1.1217 10 14 6.4998 -2.3746 3.5370 11 1 6.0431 -3.7821 3.6625 12 1 7.9545 -2.3504 3.2398 13 1 6.2432 -1.6555 4.8106 14 7 2.0183 -0.6906 -1.1961 15 6 1.6645 -2.0932 -1.4279 16 6 2.7932 -0.0357 -2.0833 17 8 3.0026 1.1517 -1.9456 18 6 3.3892 -0.7699 -3.2392 19 8 3.1709 -1.9552 -3.3830 20 7 4.1693 -0.1163 -4.1228 21 6 4.8218 -0.8240 -5.1361 22 6 5.1933 -2.1471 -4.9327 23 6 5.8340 -2.8452 -5.9372 24 6 6.1147 -2.2251 -7.1423 25 17 6.9257 -3.1039 -8.4006 26 6 5.7504 -0.9055 -7.3458 27 6 5.1052 -0.2040 -6.3466 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7516 -0.1581 2.1371 32 1 1.6054 -1.7197 1.2953 33 1 3.9825 -0.4621 0.4320 34 1 7.1885 -1.1142 1.0828 35 1 2.4694 -2.7350 -1.0696 36 1 0.7454 -2.3295 -0.8915 37 1 1.5152 -2.2587 -2.4948 38 1 4.2778 0.8453 -4.0555 39 1 4.9778 -2.6304 -3.9912 40 1 6.1200 -3.8748 -5.7809 41 1 5.9711 -0.4239 -8.2870 42 1 4.8216 0.8259 -6.5058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666942830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:11 Heat of formation + Delta-G solvation = -37.834691 kcal Electronic energy + Delta-G solvation = -27134.058754 eV Core-core repulsion = 23140.384403 eV Total energy + Delta-G solvation = -3993.674351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.34694 -40.77425 -39.41854 -38.15089 -37.51529 -36.18652 -35.57407 -33.50028 -32.15468 -31.83562 -30.67734 -28.06541 -27.42131 -26.38917 -24.54316 -24.22562 -23.35697 -21.84158 -20.75220 -19.36580 -19.13916 -18.57566 -18.22634 -17.53982 -17.29120 -16.88939 -16.60368 -16.12861 -15.60465 -15.58261 -15.25424 -15.11012 -15.01563 -14.59795 -14.43081 -14.19610 -13.94482 -13.79406 -13.65944 -13.30400 -13.13994 -13.05264 -12.97503 -12.76080 -12.59382 -12.56118 -12.42060 -12.18640 -11.84322 -11.82805 -11.76186 -11.36514 -10.97377 -10.51778 -10.09660 -9.81079 -9.18357 -9.02411 -7.95895 -5.25370 -0.24734 0.23734 0.45100 1.06463 1.19645 1.44809 1.48031 1.54013 2.00478 2.32254 2.54316 2.60079 3.12625 3.37957 3.74449 3.77401 3.85063 4.03367 4.16197 4.23457 4.26100 4.28151 4.34387 4.42914 4.67652 4.78175 4.80011 4.84835 4.90976 4.94360 5.01273 5.08772 5.11176 5.18938 5.21884 5.29851 5.39417 5.48063 5.70932 5.86300 6.12454 6.24054 6.53942 6.79076 7.30690 8.05650 8.28306 9.27031 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.003161 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.499366 B = 8855.380649 C =10667.491392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.126 3.874 3 H 0.082 0.918 4 C 0.140 3.860 5 N -0.743 5.743 6 C -0.244 4.244 7 H 0.079 0.921 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.974 3.026 11 H -0.277 1.277 12 H -0.298 1.298 13 H -0.277 1.277 14 N -0.562 5.562 15 C 0.081 3.919 16 C 0.503 3.497 17 O -0.546 6.546 18 C 0.512 3.488 19 O -0.503 6.503 20 N -0.635 5.635 21 C 0.137 3.863 22 C -0.131 4.131 23 C -0.093 4.093 24 C -0.057 4.057 25 Cl -0.067 7.067 26 C -0.083 4.083 27 C -0.122 4.122 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.369 0.631 34 H 0.249 0.751 35 H 0.038 0.962 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.431 0.569 39 H 0.124 0.876 40 H 0.144 0.856 41 H 0.167 0.833 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 0.579 -17.880 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.023 3.977 3 H 0.101 0.899 4 C 0.013 3.987 5 N -0.385 5.385 6 C -0.376 4.376 7 H 0.097 0.903 8 C -0.268 4.268 9 N -0.619 5.619 10 Si 0.802 3.198 11 H -0.203 1.203 12 H -0.225 1.225 13 H -0.203 1.203 14 N -0.293 5.293 15 C -0.060 4.060 16 C 0.285 3.715 17 O -0.425 6.425 18 C 0.294 3.706 19 O -0.377 6.377 20 N -0.282 5.282 21 C 0.043 3.957 22 C -0.152 4.152 23 C -0.112 4.112 24 C -0.084 4.084 25 Cl -0.038 7.038 26 C -0.102 4.102 27 C -0.142 4.142 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.200 0.800 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.271 0.729 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.185 0.815 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.286 0.192 -17.753 19.593 hybrid contribution 1.317 -0.088 0.748 1.518 sum -6.969 0.104 -17.005 18.378 Atomic orbital electron populations 1.22006 0.90508 1.03904 1.03784 1.21578 0.96724 0.96743 0.82649 0.89932 1.21262 0.84044 0.98056 0.95346 1.42484 1.02015 1.69923 1.24123 1.19600 0.89912 1.28482 0.99604 0.90279 1.25574 0.97561 1.03065 1.00555 1.69838 1.06893 1.52796 1.32406 0.85213 0.77021 0.78593 0.78931 1.20275 1.22459 1.20279 1.47719 1.46825 1.13833 1.20942 1.22162 1.01076 0.78936 1.03852 1.19968 0.80237 0.86986 0.84271 1.90723 1.60515 1.15431 1.75859 1.20230 0.79771 0.87275 0.83276 1.90708 1.58151 1.15242 1.73647 1.43093 1.44817 1.12922 1.27335 1.18060 0.95977 0.92678 0.88965 1.21191 0.99292 0.94428 1.00261 1.21025 0.97825 1.01014 0.91382 1.21047 1.02250 0.94117 0.91004 1.98366 1.77890 1.76090 1.51430 1.21156 0.96883 0.91659 1.00490 1.21137 1.01056 1.02272 0.89743 0.91363 0.90476 0.89275 0.94162 0.94632 0.79963 0.94255 0.94315 0.88592 0.88545 0.72932 0.85785 0.83870 0.81511 0.81414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.18 71.98 0.66 -2.41 16 2 C 0.13 4.02 2.79 44.99 0.13 4.15 16 3 H 0.08 3.01 6.91 -2.39 -0.02 2.99 16 4 C 0.14 5.37 5.56 86.38 0.48 5.85 16 5 N -0.74 -38.20 5.43 -343.44 -1.87 -40.06 16 6 C -0.24 -13.72 9.99 84.03 0.84 -12.88 16 7 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 8 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 9 N -0.97 -60.78 13.06 21.65 0.28 -60.49 16 10 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 N -0.56 -18.65 2.24 -824.30 -1.85 -20.50 16 15 C 0.08 2.39 8.40 127.77 1.07 3.46 16 16 C 0.50 17.99 7.43 87.24 0.65 18.64 16 17 O -0.55 -21.37 15.83 -3.26 -0.05 -21.42 16 18 C 0.51 16.77 7.53 87.24 0.66 17.42 16 19 O -0.50 -17.25 10.69 -3.35 -0.04 -17.29 16 20 N -0.64 -17.25 5.34 -304.82 -1.63 -18.88 16 21 C 0.14 3.47 6.35 38.20 0.24 3.71 16 22 C -0.13 -3.70 8.67 22.40 0.19 -3.51 16 23 C -0.09 -2.21 9.82 22.27 0.22 -1.99 16 24 C -0.06 -1.16 6.32 22.35 0.14 -1.01 16 25 Cl -0.07 -1.22 28.95 -2.72 -0.08 -1.30 16 26 C -0.08 -1.39 9.82 22.27 0.22 -1.17 16 27 C -0.12 -2.19 9.95 22.40 0.22 -1.97 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.42 6.67 -2.38 -0.02 1.41 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.50 8.14 -2.38 -0.02 1.49 16 32 H 0.04 1.30 7.84 -2.39 -0.02 1.28 16 33 H 0.37 20.89 7.07 -92.70 -0.65 20.24 16 34 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 35 H 0.04 1.38 8.13 -2.39 -0.02 1.37 16 36 H 0.10 2.20 6.44 -2.39 -0.02 2.19 16 37 H 0.10 2.68 5.83 -2.39 -0.01 2.66 16 38 H 0.43 10.16 8.28 -92.71 -0.77 9.39 16 39 H 0.12 4.17 6.12 -2.91 -0.02 4.15 16 40 H 0.14 3.06 8.06 -2.92 -0.02 3.04 16 41 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -71.86 367.76 2.65 -69.21 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.34 Total: 37.56 kcal Atomic # 6 Polarization: 18.17 SS G_CDS: 6.19 Total: 24.36 kcal Atomic # 7 Polarization: -134.87 SS G_CDS: -5.06 Total: -139.93 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.09 Total: -38.71 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -71.86 2.65 -69.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666942830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.380 kcal (2) G-P(sol) polarization free energy of solvation -71.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds