Wall clock time and date at job start Tue Mar 31 2020 23:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47167 * 2 1 4 4 C 1.53004 * 109.47225 * 239.99990 * 2 1 3 5 5 N 1.46499 * 109.46902 * 184.99761 * 4 2 1 6 6 C 1.36939 * 119.99708 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00414 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99759 * 180.02562 * 6 5 4 9 9 N 1.31623 * 120.00036 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00281 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47302 * 90.00164 * 10 8 6 12 12 H 1.48505 * 109.47519 * 210.00185 * 10 8 6 13 13 H 1.48499 * 109.47293 * 330.00185 * 10 8 6 14 14 N 1.46494 * 109.47478 * 119.99785 * 2 1 3 15 15 C 1.46502 * 120.00118 * 59.99942 * 14 2 1 16 16 C 1.34776 * 120.00157 * 240.00276 * 14 2 1 17 17 O 1.21355 * 120.00008 * 356.43910 * 16 14 2 18 18 C 1.49355 * 119.99801 * 176.43139 * 16 14 2 19 19 O 1.21381 * 120.00353 * 5.93125 * 18 16 14 20 20 N 1.34779 * 119.99843 * 185.91908 * 18 16 14 21 21 C 1.39759 * 119.99974 * 175.31687 * 20 18 16 22 22 C 1.38929 * 120.06441 * 214.83144 * 21 20 18 23 23 C 1.38092 * 119.93358 * 179.72263 * 22 21 20 24 24 C 1.38393 * 120.06568 * 0.55612 * 23 22 21 25 25 Cl 1.73606 * 119.93939 * 179.70270 * 24 23 22 26 26 C 1.38398 * 120.12774 * 359.71711 * 24 23 22 27 27 C 1.38099 * 120.05830 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.46454 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46823 * 60.00320 * 1 2 3 30 30 H 1.08994 * 109.47053 * 299.99895 * 1 2 3 31 31 H 1.08991 * 109.47113 * 304.99799 * 4 2 1 32 32 H 1.09001 * 109.47062 * 64.99832 * 4 2 1 33 33 H 0.96998 * 120.00298 * 0.02562 * 5 4 2 34 34 H 0.96997 * 120.00253 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.47260 * 95.98149 * 15 14 2 36 36 H 1.08998 * 109.47769 * 215.98244 * 15 14 2 37 37 H 1.09007 * 109.47056 * 335.98357 * 15 14 2 38 38 H 0.97001 * 119.99847 * 355.32467 * 20 18 16 39 39 H 1.07995 * 120.02978 * 359.97438 * 22 21 20 40 40 H 1.08002 * 119.96289 * 180.25132 * 23 22 21 41 41 H 1.07996 * 119.97272 * 179.97438 * 26 24 23 42 42 H 1.08000 * 120.02426 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 3.5001 -0.8263 -1.1905 6 6 4.1839 -1.4378 -2.2072 7 1 3.6470 -1.8430 -3.0521 8 6 5.5673 -1.5378 -2.1513 9 7 6.2247 -2.1261 -3.1282 10 14 6.4962 -0.8376 -0.6897 11 1 6.6268 -1.8804 0.3595 12 1 7.8473 -0.4011 -1.1247 13 1 5.7529 0.3253 -0.1419 14 7 2.0184 -0.6905 1.1961 15 6 1.6646 -2.0931 1.4281 16 6 2.7933 -0.0355 2.0833 17 8 3.1398 1.1059 1.8597 18 6 3.2253 -0.7143 3.3416 19 8 2.9703 -1.8880 3.5164 20 7 3.8985 -0.0235 4.2829 21 6 4.2171 -0.6303 5.5009 22 6 4.2205 0.1179 6.6714 23 6 4.5301 -0.4857 7.8742 24 6 4.8481 -1.8321 7.9127 25 17 5.2443 -2.5859 9.4255 26 6 4.8511 -2.5787 6.7474 27 6 4.5371 -1.9816 5.5424 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 0.5138 0.8899 31 1 1.6055 -1.7197 -1.2952 32 1 1.7517 -0.1583 -2.1370 33 1 3.9824 -0.4627 -0.4316 34 1 7.1913 -2.1956 -3.0894 35 1 2.4675 -2.7352 1.0657 36 1 1.5199 -2.2597 2.4955 37 1 0.7430 -2.3282 0.8955 38 1 4.1619 0.8949 4.1150 39 1 3.9773 1.1697 6.6412 40 1 4.5289 0.0946 8.7850 41 1 5.1000 -3.6291 6.7803 42 1 4.5400 -2.5646 4.6334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666942831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:15 Heat of formation + Delta-G solvation = -10.849094 kcal Electronic energy + Delta-G solvation = -27193.037696 eV Core-core repulsion = 23200.533529 eV Total energy + Delta-G solvation = -3992.504168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36560 -39.84068 -38.50758 -36.98065 -36.75118 -35.10878 -34.08747 -31.97604 -31.44577 -30.58429 -29.89477 -26.97264 -26.09470 -25.30474 -23.50639 -22.70128 -22.01759 -20.84988 -19.69571 -18.38720 -17.72257 -17.54212 -17.27044 -16.61810 -16.29138 -15.78447 -15.28045 -14.80687 -14.55966 -14.45435 -14.13821 -13.97900 -13.85938 -13.69066 -13.07972 -12.92020 -12.85561 -12.71385 -12.49813 -12.38722 -12.14377 -12.07426 -11.90607 -11.84315 -11.33389 -11.15151 -10.99258 -10.85817 -10.64486 -10.49353 -10.16323 -9.61890 -9.52128 -9.32524 -8.93699 -8.65356 -8.44898 -7.26210 -5.79270 -3.14507 0.58829 0.93296 1.38835 1.81276 2.12980 3.01031 3.30749 3.33299 3.35820 3.42740 3.43680 4.12533 4.42775 4.51069 4.58017 4.86269 4.89533 4.98050 5.07866 5.17132 5.29918 5.38695 5.49963 5.51435 5.61675 5.71184 5.73406 5.79720 5.86136 5.87370 5.89923 5.99626 6.12306 6.18182 6.24070 6.46150 6.52005 6.58864 6.79409 7.19184 7.50313 7.87655 7.95780 8.39758 9.18416 9.91311 10.10710 11.39036 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.003083 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.508300 B = 9080.326917 C =10275.714333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.118 3.882 3 H 0.104 0.896 4 C 0.149 3.851 5 N -0.752 5.752 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.008 3.992 9 N -0.932 5.932 10 Si 0.873 3.127 11 H -0.285 1.285 12 H -0.288 1.288 13 H -0.274 1.274 14 N -0.561 5.561 15 C 0.062 3.938 16 C 0.504 3.496 17 O -0.522 6.522 18 C 0.512 3.488 19 O -0.488 6.488 20 N -0.649 5.649 21 C 0.150 3.850 22 C -0.129 4.129 23 C -0.092 4.092 24 C -0.050 4.050 25 Cl -0.073 7.073 26 C -0.089 4.089 27 C -0.108 4.108 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.041 0.959 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.425 0.575 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.222 3.406 22.867 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.015 3.985 3 H 0.122 0.878 4 C 0.021 3.979 5 N -0.398 5.398 6 C -0.373 4.373 7 H 0.109 0.891 8 C -0.188 4.188 9 N -0.580 5.580 10 Si 0.703 3.297 11 H -0.212 1.212 12 H -0.215 1.215 13 H -0.199 1.199 14 N -0.293 5.293 15 C -0.080 4.080 16 C 0.285 3.715 17 O -0.399 6.399 18 C 0.295 3.705 19 O -0.362 6.362 20 N -0.296 5.296 21 C 0.056 3.944 22 C -0.150 4.150 23 C -0.111 4.111 24 C -0.077 4.077 25 Cl -0.044 7.044 26 C -0.108 4.108 27 C -0.128 4.128 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.263 0.737 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.197 2.988 22.685 24.660 hybrid contribution 1.050 0.751 0.936 1.595 sum -8.147 3.739 23.621 25.265 Atomic orbital electron populations 1.22066 0.94097 1.02691 1.02534 1.21699 0.94176 0.98549 0.84054 0.87776 1.20999 0.85815 0.97637 0.93468 1.42639 1.01204 1.71291 1.24685 1.19033 0.89860 1.29244 0.99179 0.89079 1.24620 0.96162 1.00520 0.97468 1.69689 1.07345 1.48511 1.32486 0.86693 0.80047 0.79341 0.83602 1.21162 1.21453 1.19950 1.47682 1.47353 1.13320 1.20980 1.22406 1.01521 0.79940 1.04086 1.19680 0.80792 0.86546 0.84464 1.90778 1.54699 1.17563 1.76825 1.20501 0.78350 0.86938 0.84732 1.90687 1.52484 1.15043 1.77961 1.43197 1.54648 1.18115 1.13624 1.17837 0.98526 0.93171 0.84890 1.20890 1.03115 1.00715 0.90245 1.20817 0.99214 0.92765 0.98285 1.20948 1.05633 0.93730 0.87393 1.98371 1.92512 1.82150 1.31385 1.21002 0.99004 1.00536 0.90300 1.21373 0.98198 0.94014 0.99200 0.91819 0.90712 0.92415 0.94937 0.94108 0.80582 0.93027 0.91160 0.88270 0.91121 0.73651 0.84414 0.84410 0.84347 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.18 37.16 0.34 -1.37 16 2 C 0.12 1.79 2.79 -67.93 -0.19 1.60 16 3 H 0.10 1.73 6.90 -51.93 -0.36 1.37 16 4 C 0.15 2.78 5.56 -4.04 -0.02 2.75 16 5 N -0.75 -18.14 5.24 -59.91 -0.31 -18.45 16 6 C -0.24 -6.95 10.47 -15.06 -0.16 -7.10 16 7 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 8 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 9 N -0.93 -29.62 13.97 55.49 0.78 -28.85 16 10 Si 0.87 22.94 27.73 -169.99 -4.71 18.23 16 11 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 13 H -0.27 -7.04 6.52 56.52 0.37 -6.67 16 14 N -0.56 -8.65 2.24 -174.47 -0.39 -9.04 16 15 C 0.06 0.85 8.67 59.85 0.52 1.37 16 16 C 0.50 8.12 7.43 -11.63 -0.09 8.04 16 17 O -0.52 -9.34 15.82 5.49 0.09 -9.25 16 18 C 0.51 7.32 7.61 -11.63 -0.09 7.23 16 19 O -0.49 -7.27 10.57 5.47 0.06 -7.21 16 20 N -0.65 -7.66 5.32 -10.29 -0.05 -7.71 16 21 C 0.15 1.65 6.30 -83.74 -0.53 1.12 16 22 C -0.13 -1.11 9.97 -39.38 -0.39 -1.50 16 23 C -0.09 -0.76 9.82 -39.58 -0.39 -1.15 16 24 C -0.05 -0.47 6.32 -39.47 -0.25 -0.72 16 25 Cl -0.07 -0.64 28.95 -51.86 -1.50 -2.14 16 26 C -0.09 -0.90 9.82 -39.57 -0.39 -1.29 16 27 C -0.11 -1.25 8.69 -39.38 -0.34 -1.60 16 28 H 0.06 0.64 6.67 -51.93 -0.35 0.30 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.60 7.84 -51.93 -0.41 0.19 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.36 8.91 4.93 -40.82 -0.20 8.71 16 34 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.10 1.29 5.36 -51.94 -0.28 1.01 16 37 H 0.07 0.81 6.44 -51.92 -0.33 0.48 16 38 H 0.42 4.37 8.30 -40.82 -0.34 4.03 16 39 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 42 H 0.15 1.98 6.22 -52.49 -0.33 1.65 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -33.77 364.50 -7.77 -41.54 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.14 Total: 9.84 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.07 Total: 7.54 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: 0.02 Total: -64.05 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.14 Total: -16.46 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.23 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.77 -7.77 -41.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666942831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.696 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds