Wall clock time and date at job start Tue Mar 31 2020 23:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47167 * 2 1 4 4 C 1.53004 * 109.47225 * 239.99990 * 2 1 3 5 5 N 1.46499 * 109.46902 * 184.99761 * 4 2 1 6 6 C 1.36939 * 119.99708 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00414 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99759 * 180.02562 * 6 5 4 9 9 N 1.31623 * 120.00036 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00281 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47302 * 90.00164 * 10 8 6 12 12 H 1.48505 * 109.47519 * 210.00185 * 10 8 6 13 13 H 1.48499 * 109.47293 * 330.00185 * 10 8 6 14 14 N 1.46494 * 109.47478 * 119.99785 * 2 1 3 15 15 C 1.46502 * 120.00118 * 59.99942 * 14 2 1 16 16 C 1.34776 * 120.00157 * 240.00276 * 14 2 1 17 17 O 1.21355 * 120.00008 * 356.43910 * 16 14 2 18 18 C 1.49355 * 119.99801 * 176.43139 * 16 14 2 19 19 O 1.21381 * 120.00353 * 5.93125 * 18 16 14 20 20 N 1.34779 * 119.99843 * 185.91908 * 18 16 14 21 21 C 1.39759 * 119.99974 * 175.31687 * 20 18 16 22 22 C 1.38929 * 120.06441 * 214.83144 * 21 20 18 23 23 C 1.38092 * 119.93358 * 179.72263 * 22 21 20 24 24 C 1.38393 * 120.06568 * 0.55612 * 23 22 21 25 25 Cl 1.73606 * 119.93939 * 179.70270 * 24 23 22 26 26 C 1.38398 * 120.12774 * 359.71711 * 24 23 22 27 27 C 1.38099 * 120.05830 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.46454 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46823 * 60.00320 * 1 2 3 30 30 H 1.08994 * 109.47053 * 299.99895 * 1 2 3 31 31 H 1.08991 * 109.47113 * 304.99799 * 4 2 1 32 32 H 1.09001 * 109.47062 * 64.99832 * 4 2 1 33 33 H 0.96998 * 120.00298 * 0.02562 * 5 4 2 34 34 H 0.96997 * 120.00253 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.47260 * 95.98149 * 15 14 2 36 36 H 1.08998 * 109.47769 * 215.98244 * 15 14 2 37 37 H 1.09007 * 109.47056 * 335.98357 * 15 14 2 38 38 H 0.97001 * 119.99847 * 355.32467 * 20 18 16 39 39 H 1.07995 * 120.02978 * 359.97438 * 22 21 20 40 40 H 1.08002 * 119.96289 * 180.25132 * 23 22 21 41 41 H 1.07996 * 119.97272 * 179.97438 * 26 24 23 42 42 H 1.08000 * 120.02426 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 3.5001 -0.8263 -1.1905 6 6 4.1839 -1.4378 -2.2072 7 1 3.6470 -1.8430 -3.0521 8 6 5.5673 -1.5378 -2.1513 9 7 6.2247 -2.1261 -3.1282 10 14 6.4962 -0.8376 -0.6897 11 1 6.6268 -1.8804 0.3595 12 1 7.8473 -0.4011 -1.1247 13 1 5.7529 0.3253 -0.1419 14 7 2.0184 -0.6905 1.1961 15 6 1.6646 -2.0931 1.4281 16 6 2.7933 -0.0355 2.0833 17 8 3.1398 1.1059 1.8597 18 6 3.2253 -0.7143 3.3416 19 8 2.9703 -1.8880 3.5164 20 7 3.8985 -0.0235 4.2829 21 6 4.2171 -0.6303 5.5009 22 6 4.2205 0.1179 6.6714 23 6 4.5301 -0.4857 7.8742 24 6 4.8481 -1.8321 7.9127 25 17 5.2443 -2.5859 9.4255 26 6 4.8511 -2.5787 6.7474 27 6 4.5371 -1.9816 5.5424 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 0.5138 0.8899 31 1 1.6055 -1.7197 -1.2952 32 1 1.7517 -0.1583 -2.1370 33 1 3.9824 -0.4627 -0.4316 34 1 7.1913 -2.1956 -3.0894 35 1 2.4675 -2.7352 1.0657 36 1 1.5199 -2.2597 2.4955 37 1 0.7430 -2.3282 0.8955 38 1 4.1619 0.8949 4.1150 39 1 3.9773 1.1697 6.6412 40 1 4.5289 0.0946 8.7850 41 1 5.1000 -3.6291 6.7803 42 1 4.5400 -2.5646 4.6334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666942831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:15 Heat of formation + Delta-G solvation = -33.185578 kcal Electronic energy + Delta-G solvation = -27194.006279 eV Core-core repulsion = 23200.533529 eV Total energy + Delta-G solvation = -3993.472750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.42655 -40.84257 -39.49176 -38.25585 -37.55497 -36.30700 -35.65821 -33.69196 -32.27415 -32.15040 -30.73004 -28.11053 -27.64979 -26.45882 -24.34862 -24.08770 -23.38549 -21.95456 -20.94634 -19.71762 -19.33568 -18.63143 -18.26697 -17.58964 -17.42867 -16.88203 -16.65094 -16.35534 -15.89306 -15.55477 -15.26941 -15.16982 -14.84099 -14.61113 -14.49860 -14.30939 -14.23769 -13.89433 -13.82154 -13.60183 -13.21086 -13.11835 -12.98834 -12.95214 -12.61053 -12.56928 -12.36210 -12.26853 -11.91595 -11.87304 -11.81254 -11.36015 -11.08078 -10.56685 -10.12825 -9.87185 -9.35650 -9.28033 -8.09988 -5.41187 -0.29308 0.20598 0.34391 1.01497 1.15417 1.24818 1.27433 1.34107 1.87964 2.26352 2.37866 2.54046 3.04185 3.22068 3.52738 3.72880 3.82357 3.89556 4.12425 4.18116 4.22851 4.23684 4.29377 4.33127 4.66504 4.75650 4.77291 4.81788 4.88571 4.91448 4.98201 5.06519 5.07953 5.16193 5.19727 5.28626 5.34749 5.67240 5.70176 5.79696 6.05124 6.14762 6.47150 6.70324 7.00426 7.77640 7.94131 9.11647 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.003083 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.508300 B = 9080.326917 C =10275.714333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.123 3.877 3 H 0.090 0.910 4 C 0.142 3.858 5 N -0.758 5.758 6 C -0.225 4.225 7 H 0.068 0.932 8 C -0.055 4.055 9 N -0.978 5.978 10 Si 0.935 3.065 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.266 1.266 14 N -0.564 5.564 15 C 0.066 3.934 16 C 0.496 3.504 17 O -0.545 6.545 18 C 0.510 3.490 19 O -0.500 6.500 20 N -0.637 5.637 21 C 0.131 3.869 22 C -0.117 4.117 23 C -0.086 4.086 24 C -0.053 4.053 25 Cl -0.067 7.067 26 C -0.095 4.095 27 C -0.125 4.125 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.359 0.641 34 H 0.258 0.742 35 H 0.043 0.957 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.432 0.568 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.146 0.854 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.514 4.613 25.417 27.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.020 3.980 3 H 0.108 0.892 4 C 0.016 3.984 5 N -0.403 5.403 6 C -0.356 4.356 7 H 0.086 0.914 8 C -0.247 4.247 9 N -0.629 5.629 10 Si 0.764 3.236 11 H -0.209 1.209 12 H -0.215 1.215 13 H -0.192 1.192 14 N -0.296 5.296 15 C -0.075 4.075 16 C 0.279 3.721 17 O -0.423 6.423 18 C 0.293 3.707 19 O -0.375 6.375 20 N -0.284 5.284 21 C 0.037 3.963 22 C -0.137 4.137 23 C -0.105 4.105 24 C -0.081 4.081 25 Cl -0.038 7.038 26 C -0.114 4.114 27 C -0.146 4.146 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.191 0.809 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.272 0.728 39 H 0.184 0.816 40 H 0.183 0.817 41 H 0.163 0.837 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.533 4.209 25.271 27.700 hybrid contribution 1.379 0.349 0.167 1.432 sum -9.154 4.558 25.437 27.416 Atomic orbital electron populations 1.22014 0.90317 1.04029 1.03937 1.21651 0.96919 0.97015 0.82397 0.89188 1.21267 0.82686 0.98693 0.95783 1.42714 1.03491 1.70708 1.23381 1.19073 0.89966 1.27537 0.99056 0.91424 1.25293 0.97292 1.01990 1.00139 1.69833 1.07475 1.50873 1.34690 0.85692 0.78636 0.78786 0.80494 1.20910 1.21483 1.19170 1.47842 1.47045 1.13878 1.20815 1.22422 1.01523 0.78577 1.04967 1.20063 0.80455 0.86453 0.85171 1.90755 1.55550 1.18507 1.77532 1.20238 0.78959 0.86857 0.84691 1.90684 1.53365 1.15332 1.78132 1.43097 1.53660 1.18200 1.13473 1.18028 0.99809 0.93257 0.85205 1.21172 1.01528 1.01815 0.89194 1.21159 0.97779 0.92404 0.99190 1.21095 1.05303 0.94316 0.87352 1.98376 1.92435 1.82187 1.30801 1.21071 0.99099 1.01094 0.90181 1.21272 0.99733 0.94519 0.99027 0.90494 0.89200 0.91147 0.93994 0.93488 0.80869 0.93278 0.93864 0.87442 0.88565 0.72844 0.81611 0.81724 0.83654 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.18 71.98 0.66 -2.08 16 2 C 0.12 3.53 2.79 44.99 0.13 3.65 16 3 H 0.09 2.88 6.90 -2.39 -0.02 2.87 16 4 C 0.14 5.14 5.56 86.38 0.48 5.62 16 5 N -0.76 -36.26 5.24 -343.46 -1.80 -38.06 16 6 C -0.23 -12.99 10.47 84.03 0.88 -12.11 16 7 H 0.07 4.17 8.06 -2.91 -0.02 4.14 16 8 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 9 N -0.98 -63.49 13.97 21.65 0.30 -63.19 16 10 Si 0.94 48.21 27.73 68.60 1.90 50.11 16 11 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 13 H -0.27 -13.23 6.52 99.48 0.65 -12.58 16 14 N -0.56 -16.70 2.24 -824.27 -1.85 -18.55 16 15 C 0.07 1.74 8.67 127.77 1.11 2.85 16 16 C 0.50 15.60 7.43 87.24 0.65 16.25 16 17 O -0.54 -19.07 15.82 -3.26 -0.05 -19.12 16 18 C 0.51 14.29 7.61 87.24 0.66 14.95 16 19 O -0.50 -14.81 10.57 -3.34 -0.04 -14.85 16 20 N -0.64 -14.35 5.32 -304.81 -1.62 -15.98 16 21 C 0.13 2.70 6.30 38.21 0.24 2.94 16 22 C -0.12 -1.69 9.97 22.40 0.22 -1.46 16 23 C -0.09 -1.17 9.82 22.27 0.22 -0.96 16 24 C -0.05 -0.90 6.32 22.34 0.14 -0.76 16 25 Cl -0.07 -1.05 28.95 -2.72 -0.08 -1.13 16 26 C -0.10 -1.84 9.82 22.27 0.22 -1.62 16 27 C -0.13 -2.88 8.69 22.40 0.19 -2.68 16 28 H 0.08 1.27 6.67 -2.39 -0.02 1.26 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.46 7.84 -2.39 -0.02 1.45 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.36 17.51 4.93 -92.71 -0.46 17.05 16 34 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 35 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.11 2.67 5.36 -2.48 -0.01 2.66 16 37 H 0.10 1.98 6.44 -2.38 -0.02 1.96 16 38 H 0.43 8.30 8.30 -92.71 -0.77 7.53 16 39 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 42 H 0.13 3.52 6.22 -2.91 -0.02 3.50 16 Total: -1.00 -73.70 364.50 2.84 -70.87 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.20 Total: 28.19 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 6.27 Total: 21.71 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -4.97 Total: -135.78 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.09 Total: -33.97 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 1.90 Total: 50.11 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -73.70 2.84 -70.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666942831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.682 kcal (2) G-P(sol) polarization free energy of solvation -73.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds