Wall clock time and date at job start Tue Mar 31 2020 23:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47111 * 2 1 4 4 C 1.52999 * 109.47150 * 119.99842 * 2 1 3 5 5 N 1.46501 * 109.47296 * 175.00369 * 4 2 1 6 6 C 1.46492 * 119.99788 * 269.72214 * 5 4 2 7 7 C 1.36930 * 120.00045 * 90.00076 * 5 4 2 8 8 H 1.08006 * 119.99909 * 325.63618 * 7 5 4 9 9 C 1.38816 * 120.00216 * 145.64285 * 7 5 4 10 10 N 1.31616 * 119.99933 * 4.51308 * 9 7 5 11 11 Si 1.86806 * 120.00057 * 184.50764 * 9 7 5 12 12 H 1.48498 * 109.46642 * 90.00209 * 11 9 7 13 13 H 1.48500 * 109.47041 * 210.00154 * 11 9 7 14 14 H 1.48502 * 109.47209 * 330.00162 * 11 9 7 15 15 N 1.46501 * 109.47291 * 239.99592 * 2 1 3 16 16 C 1.34779 * 119.99417 * 85.00320 * 15 2 1 17 17 O 1.21360 * 120.00493 * 359.97438 * 16 15 2 18 18 C 1.49355 * 119.99482 * 179.97438 * 16 15 2 19 19 O 1.21377 * 120.00140 * 359.97438 * 18 16 15 20 20 N 1.34780 * 119.99687 * 179.97438 * 18 16 15 21 21 C 1.39760 * 119.99696 * 175.89454 * 20 18 16 22 22 C 1.38923 * 120.06178 * 214.95238 * 21 20 18 23 23 C 1.38099 * 119.93316 * 179.72242 * 22 21 20 24 24 C 1.38397 * 120.06216 * 0.55876 * 23 22 21 25 25 Cl 1.73602 * 119.93379 * 179.69937 * 24 23 22 26 26 C 1.38395 * 120.12725 * 359.72007 * 24 23 22 27 27 C 1.38095 * 120.06414 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.46518 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47542 * 300.00206 * 1 2 3 30 30 H 1.09000 * 109.46921 * 60.00687 * 1 2 3 31 31 H 1.09001 * 109.47431 * 54.99565 * 4 2 1 32 32 H 1.09006 * 109.47218 * 295.00143 * 4 2 1 33 33 H 1.09004 * 109.47345 * 274.85009 * 6 5 4 34 34 H 1.09003 * 109.47303 * 34.85119 * 6 5 4 35 35 H 1.08998 * 109.47545 * 154.84718 * 6 5 4 36 36 H 0.96997 * 120.00169 * 180.02562 * 10 9 7 37 37 H 0.96994 * 120.00039 * 264.99809 * 15 2 1 38 38 H 0.97001 * 120.00206 * 355.90195 * 20 18 16 39 39 H 1.07993 * 120.03327 * 0.02562 * 22 21 20 40 40 H 1.07996 * 119.96478 * 180.25650 * 23 22 21 41 41 H 1.08000 * 119.97088 * 179.97438 * 26 24 23 42 42 H 1.08002 * 120.02982 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1907 6 6 4.1259 -1.9947 0.5668 7 6 4.2798 0.1649 1.7241 8 1 3.9520 1.1930 1.6791 9 6 5.4917 -0.1516 2.3226 10 7 5.9333 -1.3912 2.2991 11 14 6.4957 1.1819 3.1612 12 1 6.0987 1.2762 4.5890 13 1 7.9393 0.8458 3.0699 14 1 6.2473 2.4837 2.4912 15 7 2.0184 -0.6907 -1.1961 16 6 2.1472 -0.0183 -2.3571 17 8 1.8581 1.1591 -2.4117 18 6 2.6456 -0.7223 -3.5764 19 8 2.9351 -1.8997 -3.5216 20 7 2.7739 -0.0500 -4.7375 21 6 3.3206 -0.6852 -5.8559 22 6 4.1075 0.0321 -6.7482 23 6 4.6511 -0.5995 -7.8494 24 6 4.4032 -1.9430 -8.0706 25 17 5.0819 -2.7318 -9.4602 26 6 3.6150 -2.6587 -7.1864 27 6 3.0730 -2.0336 -6.0808 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6054 -1.7197 1.2953 32 1 1.7516 -0.1582 2.1370 33 1 4.2041 -2.7990 1.2983 34 1 3.5176 -2.3268 -0.2746 35 1 5.1214 -1.7278 0.2123 36 1 6.7799 -1.6125 2.7177 37 1 2.2491 -1.6318 -1.1525 38 1 2.4868 0.8746 -4.7968 39 1 4.2979 1.0815 -6.5783 40 1 5.2663 -0.0434 -8.5412 41 1 3.4228 -3.7069 -7.3617 42 1 2.4576 -2.5925 -5.3914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669837815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:14 Heat of formation + Delta-G solvation = -19.488929 kcal Electronic energy + Delta-G solvation = -26722.742906 eV Core-core repulsion = 22729.864087 eV Total energy + Delta-G solvation = -3992.878819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10613 -39.56626 -38.33892 -36.75476 -36.59616 -35.02715 -34.09939 -31.47554 -31.35613 -30.42880 -29.77870 -26.21933 -25.76095 -25.23669 -23.41686 -22.57106 -21.54392 -20.50219 -20.14740 -18.76011 -17.71641 -17.10484 -16.76916 -16.30114 -16.02813 -15.54541 -15.07048 -14.87783 -14.61613 -14.21187 -13.86661 -13.81559 -13.75255 -13.52022 -13.34132 -12.91405 -12.67253 -12.26790 -12.16198 -12.09133 -11.81460 -11.57079 -11.48303 -11.35513 -11.09101 -10.88933 -10.72358 -10.67633 -10.41696 -10.19276 -10.10272 -9.96975 -9.54399 -9.31493 -8.86451 -8.51112 -8.40151 -6.64845 -5.82699 -3.36286 0.67897 0.99601 1.54396 1.87401 2.31994 3.19740 3.34945 3.41726 3.42860 3.43905 3.65755 4.43456 4.45997 4.57094 4.57788 4.93286 5.04892 5.16617 5.26451 5.34147 5.51814 5.58455 5.65811 5.66983 5.86275 5.91426 5.95459 6.00900 6.03769 6.06769 6.30656 6.41082 6.52052 6.66720 6.69340 6.77525 6.89775 7.33578 7.46477 7.67825 7.76213 7.78376 8.19234 8.42086 9.19834 9.77783 10.32208 11.23598 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013151 B = 0.002596 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.549751 B =10781.873158 C =11829.395934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.113 3.887 3 H 0.089 0.911 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.165 3.835 7 C -0.264 4.264 8 H 0.064 0.936 9 C 0.014 3.986 10 N -0.901 5.901 11 Si 0.902 3.098 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.279 1.279 15 N -0.664 5.664 16 C 0.507 3.493 17 O -0.530 6.530 18 C 0.510 3.490 19 O -0.495 6.495 20 N -0.650 5.650 21 C 0.152 3.848 22 C -0.129 4.129 23 C -0.091 4.091 24 C -0.051 4.051 25 Cl -0.074 7.074 26 C -0.090 4.090 27 C -0.109 4.109 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.018 0.982 34 H -0.011 1.011 35 H 0.057 0.943 36 H 0.254 0.746 37 H 0.411 0.589 38 H 0.424 0.576 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.177 -0.405 -19.121 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.006 3.994 3 H 0.107 0.893 4 C 0.012 3.988 5 N -0.320 5.320 6 C 0.020 3.980 7 C -0.394 4.394 8 H 0.082 0.918 9 C -0.185 4.185 10 N -0.545 5.545 11 Si 0.731 3.269 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.316 5.316 16 C 0.287 3.713 17 O -0.408 6.408 18 C 0.293 3.707 19 O -0.367 6.367 20 N -0.297 5.297 21 C 0.058 3.942 22 C -0.150 4.150 23 C -0.110 4.110 24 C -0.078 4.078 25 Cl -0.045 7.045 26 C -0.109 4.109 27 C -0.129 4.129 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.007 0.993 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.249 0.751 38 H 0.263 0.737 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.938 -0.582 -19.043 20.640 hybrid contribution 0.833 0.640 0.356 1.109 sum -7.105 0.058 -18.687 19.992 Atomic orbital electron populations 1.22131 0.95858 1.01718 1.02108 1.22212 0.92616 0.99116 0.85445 0.89292 1.21097 0.86401 0.97650 0.93631 1.43764 0.98896 1.22449 1.66902 1.20873 0.96091 0.88939 0.92074 1.19078 1.01486 0.87770 1.31044 0.91816 1.25347 0.99247 0.95987 0.97949 1.70011 1.20994 1.17176 1.46280 0.86308 0.79192 0.81391 0.79986 1.21182 1.21665 1.20382 1.45988 1.62442 1.14936 1.08282 1.19625 0.80147 0.87028 0.84537 1.90739 1.50157 1.15043 1.84869 1.20671 0.78398 0.87161 0.84476 1.90772 1.46197 1.15142 1.84633 1.43182 1.60797 1.17327 1.08414 1.17841 0.95635 0.93025 0.87714 1.20922 0.97755 1.00988 0.95313 1.20829 0.99790 0.92626 0.97748 1.20932 1.01504 0.93600 0.91773 1.98368 1.84166 1.80563 1.41432 1.20972 0.96444 1.00436 0.93076 1.21295 1.00656 0.93747 0.97194 0.92700 0.91391 0.92811 0.93917 0.91382 0.96325 0.99335 0.92409 0.93529 0.75053 0.73734 0.84365 0.84430 0.84454 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.48 37.16 0.35 -1.75 16 2 C 0.11 1.89 2.88 -67.93 -0.20 1.69 16 3 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 4 C 0.14 2.66 5.32 -4.04 -0.02 2.64 16 5 N -0.60 -14.32 2.76 -181.12 -0.50 -14.82 16 6 C 0.16 3.93 8.66 59.84 0.52 4.45 16 7 C -0.26 -7.08 9.55 -15.06 -0.14 -7.22 16 8 H 0.06 1.70 7.83 -52.48 -0.41 1.28 16 9 C 0.01 0.39 5.33 -17.43 -0.09 0.30 16 10 N -0.90 -25.86 10.68 55.49 0.59 -25.26 16 11 Si 0.90 21.58 29.56 -169.99 -5.02 16.56 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 N -0.66 -11.02 4.51 -54.27 -0.24 -11.26 16 16 C 0.51 8.27 7.85 -11.63 -0.09 8.18 16 17 O -0.53 -9.35 16.14 5.49 0.09 -9.26 16 18 C 0.51 7.48 7.72 -11.63 -0.09 7.39 16 19 O -0.49 -8.03 13.93 5.47 0.08 -7.96 16 20 N -0.65 -7.65 5.32 -10.29 -0.05 -7.70 16 21 C 0.15 1.71 6.29 -83.73 -0.53 1.19 16 22 C -0.13 -1.20 9.97 -39.38 -0.39 -1.60 16 23 C -0.09 -0.81 9.82 -39.57 -0.39 -1.20 16 24 C -0.05 -0.50 6.32 -39.46 -0.25 -0.75 16 25 Cl -0.07 -0.67 28.95 -51.86 -1.50 -2.18 16 26 C -0.09 -0.91 9.82 -39.58 -0.39 -1.30 16 27 C -0.11 -1.24 8.69 -39.38 -0.34 -1.58 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 32 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 33 H 0.02 0.47 7.78 -51.93 -0.40 0.07 16 34 H -0.01 -0.24 5.56 -51.93 -0.29 -0.53 16 35 H 0.06 1.55 6.98 -51.93 -0.36 1.18 16 36 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.41 6.81 5.58 -40.82 -0.23 6.59 16 38 H 0.42 4.21 8.30 -40.82 -0.34 3.87 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.15 1.81 6.25 -52.49 -0.33 1.48 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -30.77 369.77 -8.31 -39.08 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.26 Total: 6.77 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -2.05 Total: 10.45 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.21 Total: -59.04 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.16 Total: -17.22 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.77 -8.31 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669837815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.596 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds