Wall clock time and date at job start Tue Mar 31 2020 23:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47111 * 2 1 4 4 C 1.52999 * 109.47150 * 119.99842 * 2 1 3 5 5 N 1.46501 * 109.47296 * 175.00369 * 4 2 1 6 6 C 1.46492 * 119.99788 * 269.72214 * 5 4 2 7 7 C 1.36930 * 120.00045 * 90.00076 * 5 4 2 8 8 H 1.08006 * 119.99909 * 325.63618 * 7 5 4 9 9 C 1.38816 * 120.00216 * 145.64285 * 7 5 4 10 10 N 1.31616 * 119.99933 * 4.51308 * 9 7 5 11 11 Si 1.86806 * 120.00057 * 184.50764 * 9 7 5 12 12 H 1.48498 * 109.46642 * 90.00209 * 11 9 7 13 13 H 1.48500 * 109.47041 * 210.00154 * 11 9 7 14 14 H 1.48502 * 109.47209 * 330.00162 * 11 9 7 15 15 N 1.46501 * 109.47291 * 239.99592 * 2 1 3 16 16 C 1.34779 * 119.99417 * 85.00320 * 15 2 1 17 17 O 1.21360 * 120.00493 * 359.97438 * 16 15 2 18 18 C 1.49355 * 119.99482 * 179.97438 * 16 15 2 19 19 O 1.21377 * 120.00140 * 359.97438 * 18 16 15 20 20 N 1.34780 * 119.99687 * 179.97438 * 18 16 15 21 21 C 1.39760 * 119.99696 * 175.89454 * 20 18 16 22 22 C 1.38923 * 120.06178 * 214.95238 * 21 20 18 23 23 C 1.38099 * 119.93316 * 179.72242 * 22 21 20 24 24 C 1.38397 * 120.06216 * 0.55876 * 23 22 21 25 25 Cl 1.73602 * 119.93379 * 179.69937 * 24 23 22 26 26 C 1.38395 * 120.12725 * 359.72007 * 24 23 22 27 27 C 1.38095 * 120.06414 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.46518 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47542 * 300.00206 * 1 2 3 30 30 H 1.09000 * 109.46921 * 60.00687 * 1 2 3 31 31 H 1.09001 * 109.47431 * 54.99565 * 4 2 1 32 32 H 1.09006 * 109.47218 * 295.00143 * 4 2 1 33 33 H 1.09004 * 109.47345 * 274.85009 * 6 5 4 34 34 H 1.09003 * 109.47303 * 34.85119 * 6 5 4 35 35 H 1.08998 * 109.47545 * 154.84718 * 6 5 4 36 36 H 0.96997 * 120.00169 * 180.02562 * 10 9 7 37 37 H 0.96994 * 120.00039 * 264.99809 * 15 2 1 38 38 H 0.97001 * 120.00206 * 355.90195 * 20 18 16 39 39 H 1.07993 * 120.03327 * 0.02562 * 22 21 20 40 40 H 1.07996 * 119.96478 * 180.25650 * 23 22 21 41 41 H 1.08000 * 119.97088 * 179.97438 * 26 24 23 42 42 H 1.08002 * 120.02982 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1907 6 6 4.1259 -1.9947 0.5668 7 6 4.2798 0.1649 1.7241 8 1 3.9520 1.1930 1.6791 9 6 5.4917 -0.1516 2.3226 10 7 5.9333 -1.3912 2.2991 11 14 6.4957 1.1819 3.1612 12 1 6.0987 1.2762 4.5890 13 1 7.9393 0.8458 3.0699 14 1 6.2473 2.4837 2.4912 15 7 2.0184 -0.6907 -1.1961 16 6 2.1472 -0.0183 -2.3571 17 8 1.8581 1.1591 -2.4117 18 6 2.6456 -0.7223 -3.5764 19 8 2.9351 -1.8997 -3.5216 20 7 2.7739 -0.0500 -4.7375 21 6 3.3206 -0.6852 -5.8559 22 6 4.1075 0.0321 -6.7482 23 6 4.6511 -0.5995 -7.8494 24 6 4.4032 -1.9430 -8.0706 25 17 5.0819 -2.7318 -9.4602 26 6 3.6150 -2.6587 -7.1864 27 6 3.0730 -2.0336 -6.0808 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6054 -1.7197 1.2953 32 1 1.7516 -0.1582 2.1370 33 1 4.2041 -2.7990 1.2983 34 1 3.5176 -2.3268 -0.2746 35 1 5.1214 -1.7278 0.2123 36 1 6.7799 -1.6125 2.7177 37 1 2.2491 -1.6318 -1.1525 38 1 2.4868 0.8746 -4.7968 39 1 4.2979 1.0815 -6.5783 40 1 5.2663 -0.0434 -8.5412 41 1 3.4228 -3.7069 -7.3617 42 1 2.4576 -2.5925 -5.3914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669837815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:13 Heat of formation + Delta-G solvation = -38.601486 kcal Electronic energy + Delta-G solvation = -26723.571689 eV Core-core repulsion = 22729.864087 eV Total energy + Delta-G solvation = -3993.707602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.20210 -40.64676 -39.41260 -38.16870 -37.53012 -36.21501 -35.58078 -33.18441 -32.16641 -31.94658 -30.66377 -28.02284 -27.44729 -26.44787 -24.25526 -23.73346 -23.00333 -21.87199 -21.38089 -19.90123 -18.88670 -18.53391 -18.03232 -17.40185 -17.17074 -16.94991 -16.73386 -15.97259 -15.65140 -15.53342 -15.26122 -15.12314 -14.94411 -14.55194 -14.53824 -14.40561 -13.69515 -13.52872 -13.49180 -13.26277 -13.00105 -12.83541 -12.79470 -12.72977 -12.54087 -12.46415 -12.32384 -12.09922 -11.89922 -11.85377 -11.76513 -11.31345 -10.75858 -10.60667 -10.19676 -10.10599 -9.25486 -8.60794 -7.89006 -5.44189 -0.23170 0.23483 0.43281 1.08702 1.23532 1.45225 1.45902 1.54444 2.04207 2.47358 2.53272 2.58485 3.27867 3.30467 3.67959 3.75877 3.85328 4.07888 4.16536 4.26710 4.35090 4.37337 4.45638 4.76093 4.77653 4.79768 4.92122 4.93318 4.99584 5.09137 5.11725 5.18374 5.18806 5.28647 5.39583 5.42432 5.64280 5.69257 5.69692 5.85973 6.28892 6.38207 6.60681 6.89177 7.16221 7.83295 8.31709 9.15259 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013151 B = 0.002596 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.549751 B =10781.873158 C =11829.395934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.122 3.878 3 H 0.062 0.938 4 C 0.140 3.860 5 N -0.614 5.614 6 C 0.182 3.818 7 C -0.267 4.267 8 H 0.063 0.937 9 C -0.041 4.041 10 N -0.932 5.932 11 Si 0.963 3.037 12 H -0.281 1.281 13 H -0.296 1.296 14 H -0.272 1.272 15 N -0.668 5.668 16 C 0.506 3.494 17 O -0.545 6.545 18 C 0.512 3.488 19 O -0.516 6.516 20 N -0.634 5.634 21 C 0.130 3.870 22 C -0.122 4.122 23 C -0.089 4.089 24 C -0.055 4.055 25 Cl -0.067 7.067 26 C -0.095 4.095 27 C -0.122 4.122 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.071 0.929 33 H -0.003 1.003 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.249 0.751 37 H 0.410 0.590 38 H 0.433 0.567 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.853 0.496 -20.278 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 H 0.080 0.920 4 C 0.013 3.987 5 N -0.337 5.337 6 C 0.037 3.963 7 C -0.398 4.398 8 H 0.080 0.920 9 C -0.237 4.237 10 N -0.577 5.577 11 Si 0.791 3.209 12 H -0.207 1.207 13 H -0.222 1.222 14 H -0.197 1.197 15 N -0.320 5.320 16 C 0.286 3.714 17 O -0.424 6.424 18 C 0.295 3.705 19 O -0.390 6.390 20 N -0.282 5.282 21 C 0.036 3.964 22 C -0.143 4.143 23 C -0.108 4.108 24 C -0.082 4.082 25 Cl -0.039 7.039 26 C -0.114 4.114 27 C -0.142 4.142 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.015 0.985 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.249 0.751 38 H 0.273 0.727 39 H 0.179 0.821 40 H 0.180 0.820 41 H 0.167 0.833 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.655 0.350 -20.232 22.008 hybrid contribution 1.008 0.360 0.588 1.222 sum -7.646 0.710 -19.644 21.092 Atomic orbital electron populations 1.22035 0.92651 1.03098 1.02882 1.21959 0.94925 0.97041 0.84529 0.91951 1.21277 0.83433 0.99144 0.94823 1.43951 1.00913 1.21715 1.67118 1.20556 0.94985 0.88380 0.92373 1.19332 1.01859 0.88449 1.30126 0.91970 1.26042 1.00670 0.97894 0.99080 1.70170 1.21209 1.18825 1.47462 0.85340 0.77304 0.79180 0.79031 1.20708 1.22219 1.19708 1.45997 1.62625 1.14876 1.08492 1.19885 0.79682 0.86854 0.84961 1.90724 1.50817 1.15653 1.85239 1.20347 0.78597 0.86878 0.84714 1.90768 1.47537 1.15799 1.84935 1.43038 1.59881 1.17500 1.07741 1.18048 0.96960 0.93314 0.88035 1.21178 0.96547 1.01982 0.94544 1.21140 0.99429 0.92410 0.97799 1.21098 1.01211 0.94106 0.91825 1.98372 1.83988 1.80535 1.40964 1.21100 0.96392 1.01131 0.92777 1.21280 1.01196 0.94051 0.97661 0.91008 0.89755 0.92891 0.91852 0.91092 0.98509 0.96098 0.95997 0.94130 0.75100 0.72715 0.82060 0.82036 0.83306 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.48 71.98 0.68 -2.89 16 2 C 0.12 3.94 2.88 44.99 0.13 4.07 16 3 H 0.06 2.37 7.58 -2.39 -0.02 2.36 16 4 C 0.14 5.12 5.32 86.38 0.46 5.58 16 5 N -0.61 -29.41 2.76 -726.94 -2.01 -31.42 16 6 C 0.18 8.81 8.66 127.77 1.11 9.92 16 7 C -0.27 -14.38 9.55 84.04 0.80 -13.58 16 8 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 9 C -0.04 -2.26 5.33 84.86 0.45 -1.81 16 10 N -0.93 -54.56 10.68 21.65 0.23 -54.33 16 11 Si 0.96 44.75 29.56 68.60 2.03 46.78 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 N -0.67 -21.69 4.51 -443.96 -2.00 -23.69 16 16 C 0.51 16.27 7.85 87.24 0.68 16.95 16 17 O -0.55 -18.92 16.14 -3.28 -0.05 -18.97 16 18 C 0.51 14.86 7.72 87.24 0.67 15.54 16 19 O -0.52 -16.77 13.93 -3.33 -0.05 -16.82 16 20 N -0.63 -14.41 5.32 -304.81 -1.62 -16.03 16 21 C 0.13 2.80 6.29 38.21 0.24 3.04 16 22 C -0.12 -2.02 9.97 22.40 0.22 -1.80 16 23 C -0.09 -1.37 9.82 22.27 0.22 -1.15 16 24 C -0.06 -0.99 6.32 22.35 0.14 -0.84 16 25 Cl -0.07 -1.11 28.95 -2.72 -0.08 -1.19 16 26 C -0.09 -1.83 9.82 22.27 0.22 -1.61 16 27 C -0.12 -2.73 8.69 22.40 0.19 -2.54 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 32 H 0.07 2.56 8.04 -2.38 -0.02 2.54 16 33 H 0.00 -0.18 7.78 -2.38 -0.02 -0.20 16 34 H 0.02 0.86 5.56 -2.39 -0.01 0.85 16 35 H 0.02 1.18 6.98 -2.39 -0.02 1.16 16 36 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 37 H 0.41 13.31 5.58 -92.71 -0.52 12.79 16 38 H 0.43 8.10 8.30 -92.71 -0.77 7.34 16 39 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 40 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 41 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.14 3.38 6.25 -2.91 -0.02 3.36 16 Total: -1.00 -66.52 369.77 2.47 -64.06 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.21 Total: 22.73 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 6.23 Total: 28.88 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -5.40 Total: -125.47 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.10 Total: -35.79 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -66.52 2.47 -64.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669837815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.457 kcal (2) G-P(sol) polarization free energy of solvation -66.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds