Wall clock time and date at job start Tue Mar 31 2020 23:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47006 * 2 1 4 4 N 1.46502 * 109.47692 * 239.99558 * 2 1 3 5 5 C 1.36940 * 119.99400 * 84.99806 * 4 2 1 6 6 H 1.07995 * 120.00533 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99425 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99961 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00167 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47365 * 89.99864 * 9 7 5 11 11 H 1.48501 * 109.47285 * 209.99710 * 9 7 5 12 12 H 1.48497 * 109.47066 * 329.99814 * 9 7 5 13 13 C 1.53004 * 109.47174 * 119.99640 * 2 1 3 14 14 H 1.09005 * 109.47133 * 185.00254 * 13 2 1 15 15 C 1.53000 * 109.46967 * 65.00069 * 13 2 1 16 16 N 1.46500 * 109.47001 * 305.00199 * 13 2 1 17 17 C 1.34776 * 120.00281 * 204.72342 * 16 13 2 18 18 O 1.21361 * 119.99622 * 0.27430 * 17 16 13 19 19 C 1.49345 * 120.00346 * 180.27781 * 17 16 13 20 20 O 1.21381 * 120.00019 * 359.97438 * 19 17 16 21 21 N 1.34781 * 119.99981 * 180.02562 * 19 17 16 22 22 C 1.39760 * 119.99751 * 175.37998 * 21 19 17 23 23 C 1.38921 * 120.06198 * 214.82151 * 22 21 19 24 24 C 1.38091 * 119.93875 * 179.71898 * 23 22 21 25 25 C 1.38398 * 120.06122 * 0.56002 * 24 23 22 26 26 Cl 1.73595 * 119.93737 * 179.70095 * 25 24 23 27 27 C 1.38400 * 120.12592 * 359.71266 * 25 24 23 28 28 C 1.38091 * 120.06141 * 0.02562 * 27 25 24 29 29 H 1.08998 * 109.46721 * 60.00418 * 1 2 3 30 30 H 1.09002 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47456 * 300.00390 * 1 2 3 32 32 H 0.96996 * 120.00242 * 265.00145 * 4 2 1 33 33 H 0.96995 * 120.00155 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47131 * 180.02562 * 15 13 2 35 35 H 1.09000 * 109.46922 * 300.00193 * 15 13 2 36 36 H 1.08996 * 109.46721 * 60.00355 * 15 13 2 37 37 H 0.96999 * 119.99994 * 24.99626 * 16 13 2 38 38 H 0.96996 * 119.99882 * 355.37940 * 21 19 17 39 39 H 1.08002 * 120.03202 * 359.97438 * 23 22 21 40 40 H 1.07999 * 119.97255 * 180.24950 * 24 23 22 41 41 H 1.07999 * 119.96824 * 179.97438 * 27 25 24 42 42 H 1.07995 * 120.03138 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0404 -2.4242 7 6 2.6116 -0.6621 -3.5091 8 7 2.7368 -0.0057 -4.6431 9 14 3.0546 -2.4748 -3.4255 10 1 1.8568 -3.2925 -3.7450 11 1 4.1298 -2.7675 -4.4071 12 1 3.5294 -2.8057 -2.0579 13 6 2.0400 -0.7212 1.2493 14 1 3.1263 -0.6442 1.2952 15 6 1.6352 -2.1954 1.1881 16 7 1.4558 -0.1035 2.4424 17 6 2.0883 -0.1983 3.6287 18 8 3.1444 -0.7911 3.7076 19 6 1.4897 0.4260 4.8462 20 8 0.4337 1.0193 4.7672 21 7 2.1226 0.3317 6.0324 22 6 1.6131 0.9967 7.1511 23 6 2.4787 1.5292 8.0982 24 6 1.9727 2.1909 9.1996 25 6 0.6043 2.3137 9.3663 26 17 -0.0285 3.1393 10.7560 27 6 -0.2606 1.7792 8.4273 28 6 0.2399 1.1212 7.3212 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2492 -1.6318 -1.1525 33 1 3.0602 -0.4629 -5.4350 34 1 1.9982 -2.7091 2.0783 35 1 0.5489 -2.2723 1.1421 36 1 2.0699 -2.6549 0.3004 37 1 0.6118 0.3703 2.3793 38 1 2.9316 -0.1978 6.1097 39 1 3.5466 1.4294 7.9712 40 1 2.6452 2.6086 9.9341 41 1 -1.3280 1.8762 8.5601 42 1 -0.4354 0.7040 6.5890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717414600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:46 Heat of formation + Delta-G solvation = -48.196927 kcal Electronic energy + Delta-G solvation = -26065.695593 eV Core-core repulsion = 22071.571902 eV Total energy + Delta-G solvation = -3994.123691 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.27088 -40.79009 -39.51116 -38.59440 -37.53314 -36.19506 -35.51034 -33.73804 -32.14975 -31.53811 -30.67201 -30.07988 -26.72164 -26.04850 -24.61246 -24.09158 -23.01830 -21.51928 -20.90234 -20.28890 -19.63712 -18.61907 -18.06891 -17.45680 -17.19921 -16.84374 -16.61804 -16.02657 -15.96734 -15.67355 -15.44603 -15.16184 -15.03005 -14.65722 -14.54497 -14.43251 -14.07935 -13.74288 -13.50965 -13.23849 -13.17848 -12.99970 -12.88955 -12.76542 -12.66538 -12.52358 -12.25324 -11.91049 -11.84888 -11.78412 -11.66445 -11.32159 -11.00484 -10.82450 -10.35789 -10.09958 -9.35838 -9.25436 -8.01207 -5.35734 -0.25210 0.24340 0.38234 1.04350 1.18838 1.38796 1.41995 1.48954 1.96383 2.41111 2.49133 2.58292 3.21184 3.30221 3.60626 3.75534 3.77021 3.86170 3.98016 4.16914 4.22880 4.27167 4.37543 4.53279 4.59609 4.77957 4.80345 4.88264 4.90678 4.94550 5.09261 5.13552 5.17785 5.19445 5.20403 5.25947 5.57272 5.68136 5.78195 5.82323 6.19779 6.22330 6.56134 6.79125 7.07995 7.81784 8.00788 9.19891 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.033722 B = 0.001854 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.109378 B =15099.490893 C =15391.649269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.050 0.950 4 N -0.745 5.745 5 C -0.228 4.228 6 H 0.059 0.941 7 C -0.062 4.062 8 N -0.982 5.982 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.298 1.298 12 H -0.250 1.250 13 C 0.143 3.857 14 H 0.080 0.920 15 C -0.160 4.160 16 N -0.676 5.676 17 C 0.512 3.488 18 O -0.537 6.537 19 C 0.516 3.484 20 O -0.513 6.513 21 N -0.633 5.633 22 C 0.130 3.870 23 C -0.120 4.120 24 C -0.090 4.090 25 C -0.055 4.055 26 Cl -0.070 7.070 27 C -0.096 4.096 28 C -0.120 4.120 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.368 0.632 33 H 0.257 0.743 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.419 0.581 38 H 0.434 0.566 39 H 0.164 0.836 40 H 0.160 0.840 41 H 0.148 0.852 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 0.518 33.280 33.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.068 0.932 4 N -0.390 5.390 5 C -0.359 4.359 6 H 0.077 0.923 7 C -0.254 4.254 8 N -0.633 5.633 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.225 1.225 12 H -0.174 1.174 13 C 0.038 3.962 14 H 0.098 0.902 15 C -0.218 4.218 16 N -0.331 5.331 17 C 0.292 3.708 18 O -0.414 6.414 19 C 0.298 3.702 20 O -0.387 6.387 21 N -0.281 5.281 22 C 0.037 3.963 23 C -0.140 4.140 24 C -0.109 4.109 25 C -0.082 4.082 26 Cl -0.041 7.041 27 C -0.115 4.115 28 C -0.141 4.141 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.203 0.797 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.259 0.741 38 H 0.274 0.726 39 H 0.181 0.819 40 H 0.178 0.822 41 H 0.165 0.835 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.020 0.753 33.178 33.429 hybrid contribution 0.247 -0.755 -0.727 1.077 sum -3.773 -0.002 32.451 32.669 Atomic orbital electron populations 1.22380 0.96444 1.02278 1.01188 1.20491 0.93919 0.95216 0.84459 0.93185 1.42737 1.80096 1.09727 1.06476 1.18986 1.35284 0.94572 0.87030 0.92287 1.25462 1.02291 1.02434 0.95212 1.69877 1.54552 1.37697 1.01161 0.85518 0.77793 0.80965 0.78182 1.20247 1.22541 1.17406 1.21190 0.98521 0.93538 0.82951 0.90158 1.22159 1.03064 0.94317 1.02251 1.45871 1.26119 1.54397 1.06706 1.19914 0.84978 0.81163 0.84774 1.90786 1.22363 1.42594 1.85640 1.20150 0.84880 0.80539 0.84595 1.90784 1.21432 1.40916 1.85594 1.43034 1.29976 1.48840 1.06203 1.17997 0.93116 0.97186 0.88042 1.21175 1.00979 0.98002 0.93829 1.21144 0.93214 0.98277 0.98280 1.21127 0.94366 1.01354 0.91400 1.98379 1.87219 1.77332 1.41167 1.21105 1.00925 0.97058 0.92450 1.21291 0.94292 1.00480 0.97990 0.94010 0.91791 0.90901 0.79654 0.93404 0.91610 0.90416 0.91974 0.74124 0.72595 0.81886 0.82204 0.83466 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 9.01 71.98 0.65 -4.18 16 2 C 0.17 5.75 2.93 44.99 0.13 5.88 16 3 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 4 N -0.74 -32.44 4.84 -322.93 -1.56 -34.00 16 5 C -0.23 -12.48 10.41 84.03 0.87 -11.60 16 6 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 7 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 8 N -0.98 -62.02 13.97 21.65 0.30 -61.72 16 9 Si 0.95 44.16 27.74 68.60 1.90 46.06 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.25 -10.37 6.52 99.48 0.65 -9.72 16 13 C 0.14 4.06 2.62 44.99 0.12 4.18 16 14 H 0.08 2.57 7.58 -2.38 -0.02 2.55 16 15 C -0.16 -4.14 9.00 71.98 0.65 -3.50 16 16 N -0.68 -15.87 4.98 -443.96 -2.21 -18.09 16 17 C 0.51 11.94 7.85 87.24 0.68 12.62 16 18 O -0.54 -14.55 16.15 -3.28 -0.05 -14.61 16 19 C 0.52 10.54 7.73 87.24 0.67 11.22 16 20 O -0.51 -12.03 13.91 -3.34 -0.05 -12.08 16 21 N -0.63 -9.88 5.32 -304.82 -1.62 -11.50 16 22 C 0.13 2.00 6.30 38.21 0.24 2.24 16 23 C -0.12 -1.32 9.97 22.40 0.22 -1.09 16 24 C -0.09 -0.98 9.82 22.27 0.22 -0.76 16 25 C -0.06 -0.75 6.32 22.35 0.14 -0.61 16 26 Cl -0.07 -0.92 28.95 -2.72 -0.08 -1.00 16 27 C -0.10 -1.41 9.82 22.27 0.22 -1.19 16 28 C -0.12 -2.03 8.69 22.40 0.19 -1.83 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.77 6.57 -2.39 -0.02 1.76 16 31 H 0.07 1.65 6.29 -2.39 -0.02 1.64 16 32 H 0.37 15.33 3.63 -92.71 -0.34 15.00 16 33 H 0.26 15.53 8.31 -92.71 -0.77 14.75 16 34 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.08 1.80 6.57 -2.39 -0.02 1.78 16 36 H 0.06 1.76 6.29 -2.39 -0.02 1.75 16 37 H 0.42 8.78 6.05 -92.71 -0.56 8.22 16 38 H 0.43 5.21 8.30 -92.71 -0.77 4.44 16 39 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 40 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.14 2.61 6.23 -2.91 -0.02 2.60 16 Total: -1.00 -68.76 364.95 1.49 -67.27 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: -0.62 Total: 31.41 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 5.48 Total: 8.24 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -5.09 Total: -125.31 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.10 Total: -26.69 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.06 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -68.76 1.49 -67.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717414600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.071 kcal (2) G-P(sol) polarization free energy of solvation -68.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds