Wall clock time and date at job start Tue Mar 31 2020 23:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46761 * 2 1 4 4 N 1.46492 * 109.47324 * 120.00571 * 2 1 3 5 5 C 1.36939 * 120.00179 * 274.99871 * 4 2 1 6 6 H 1.08003 * 119.99787 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00064 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00182 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99859 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47081 * 89.99983 * 9 7 5 11 11 H 1.48494 * 109.47092 * 210.00502 * 9 7 5 12 12 H 1.48503 * 109.46870 * 329.99852 * 9 7 5 13 13 C 1.52997 * 109.46799 * 240.00890 * 2 1 3 14 14 H 1.09007 * 109.47396 * 299.99440 * 13 2 1 15 15 C 1.53009 * 109.46980 * 179.97438 * 13 2 1 16 16 N 1.46501 * 109.47849 * 59.99675 * 13 2 1 17 17 C 1.34769 * 120.00486 * 205.00137 * 16 13 2 18 18 O 1.21363 * 119.99965 * 359.97438 * 17 16 13 19 19 C 1.49346 * 120.00017 * 179.97438 * 17 16 13 20 20 O 1.21376 * 120.00168 * 0.02562 * 19 17 16 21 21 N 1.34782 * 120.00148 * 179.97438 * 19 17 16 22 22 C 1.39757 * 120.00216 * 175.38275 * 21 19 17 23 23 C 1.38925 * 120.06069 * 214.82188 * 22 21 19 24 24 C 1.38099 * 119.93356 * 179.71706 * 23 22 21 25 25 C 1.38392 * 120.06043 * 0.56149 * 24 23 22 26 26 Cl 1.73605 * 119.93452 * 179.69819 * 25 24 23 27 27 C 1.38394 * 120.13112 * 359.71542 * 25 24 23 28 28 C 1.38091 * 120.05938 * 0.02562 * 27 25 24 29 29 H 1.09001 * 109.47742 * 59.99373 * 1 2 3 30 30 H 1.09003 * 109.46761 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47311 * 299.99256 * 1 2 3 32 32 H 0.97003 * 119.99803 * 95.00411 * 4 2 1 33 33 H 0.97001 * 120.00145 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47027 * 299.99815 * 15 13 2 35 35 H 1.08998 * 109.46883 * 59.99852 * 15 13 2 36 36 H 1.09000 * 109.46995 * 179.97438 * 15 13 2 37 37 H 0.97003 * 119.99404 * 24.99480 * 16 13 2 38 38 H 0.97007 * 119.99836 * 355.37782 * 21 19 17 39 39 H 1.07995 * 120.03218 * 359.97438 * 23 22 21 40 40 H 1.07997 * 119.96508 * 180.25073 * 24 23 22 41 41 H 1.08003 * 119.97239 * 179.97438 * 27 25 24 42 42 H 1.08002 * 120.02950 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1492 -0.0077 2.3757 6 1 1.8919 1.0401 2.4244 7 6 2.6114 -0.6623 3.5091 8 7 2.9245 -1.9394 3.4499 9 14 2.7892 0.2693 5.1185 10 1 1.5213 0.1780 5.8859 11 1 3.8935 -0.3240 5.9145 12 1 3.0943 1.6946 4.8343 13 6 2.0399 -0.7211 -1.2494 14 1 1.6766 -1.7488 -1.2495 15 6 3.5700 -0.7205 -1.2497 16 7 1.5515 -0.0304 -2.4455 17 6 1.4228 -0.7026 -3.6065 18 8 1.7118 -1.8800 -3.6612 19 6 0.9244 0.0014 -4.8256 20 8 0.6357 1.1791 -4.7710 21 7 0.7961 -0.6707 -5.9869 22 6 0.2395 -0.0388 -7.1023 23 6 -0.5435 -0.7620 -7.9932 24 6 -1.0970 -0.1336 -9.0913 25 6 -0.8627 1.2126 -9.3109 26 17 -1.5537 1.9974 -10.6967 27 6 -0.0784 1.9342 -8.4281 28 6 0.4733 1.3123 -7.3255 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 2.2491 -1.6318 1.1523 33 1 3.2471 -2.3969 4.2420 34 1 3.9329 0.3073 -1.2498 35 1 3.9337 -1.2342 -0.3598 36 1 3.9333 -1.2346 -2.1396 37 1 1.3208 0.9108 -2.4018 38 1 1.0902 -1.5930 -6.0484 39 1 -0.7226 -1.8136 -7.8250 40 1 -1.7092 -0.6944 -9.7821 41 1 0.1032 2.9846 -8.6022 42 1 1.0857 1.8759 -6.6371 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717414602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:54 Heat of formation + Delta-G solvation = -35.591465 kcal Electronic energy + Delta-G solvation = -25978.613882 eV Core-core repulsion = 21985.036805 eV Total energy + Delta-G solvation = -3993.577077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35752 -39.82051 -38.59709 -36.98389 -36.87940 -35.23634 -34.00941 -31.85228 -31.55007 -30.11824 -29.63380 -28.46814 -25.56584 -24.06202 -23.61660 -23.02114 -21.94959 -20.46522 -20.24864 -18.90917 -17.98102 -17.40198 -17.19183 -16.54889 -16.25922 -15.72056 -15.14284 -14.83952 -14.65261 -14.43406 -14.09543 -13.95906 -13.80402 -13.69966 -13.38737 -13.14505 -12.84975 -12.50880 -12.34697 -11.99607 -11.98542 -11.85458 -11.70318 -11.28885 -11.23566 -11.03372 -10.88290 -10.75078 -10.61029 -10.27879 -10.01667 -9.86955 -9.69690 -9.49183 -9.21395 -8.93256 -8.58646 -7.05824 -5.83068 -3.13143 0.48592 0.83159 1.27684 1.72711 2.05767 2.94038 3.22940 3.36315 3.40184 3.46075 3.46961 4.21368 4.34671 4.41559 4.55123 4.76438 4.87710 4.98966 5.14121 5.40157 5.41304 5.50937 5.55455 5.63499 5.73018 5.77700 5.79617 5.85046 5.99155 6.03665 6.22881 6.31717 6.33688 6.39028 6.47666 6.62020 6.71340 6.78880 6.94105 7.20011 7.46560 7.64134 7.87190 8.34131 9.45993 9.99498 10.34740 11.39087 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034400 B = 0.001783 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.750413 B =15701.482501 C =16067.477628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.168 3.832 3 H 0.054 0.946 4 N -0.717 5.717 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.132 3.868 14 H 0.091 0.909 15 C -0.154 4.154 16 N -0.679 5.679 17 C 0.507 3.493 18 O -0.519 6.519 19 C 0.511 3.489 20 O -0.497 6.497 21 N -0.648 5.648 22 C 0.149 3.851 23 C -0.128 4.128 24 C -0.091 4.091 25 C -0.049 4.049 26 Cl -0.072 7.072 27 C -0.090 4.090 28 C -0.108 4.108 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.411 0.589 38 H 0.426 0.574 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 4.328 -27.403 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.058 3.942 3 H 0.072 0.928 4 N -0.359 5.359 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.207 4.207 8 N -0.578 5.578 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.207 1.207 13 C 0.028 3.972 14 H 0.109 0.891 15 C -0.212 4.212 16 N -0.331 5.331 17 C 0.286 3.714 18 O -0.395 6.395 19 C 0.293 3.707 20 O -0.370 6.370 21 N -0.295 5.295 22 C 0.054 3.946 23 C -0.148 4.148 24 C -0.110 4.110 25 C -0.077 4.077 26 Cl -0.043 7.043 27 C -0.110 4.110 28 C -0.128 4.128 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.247 0.753 38 H 0.264 0.736 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.159 4.496 -27.252 28.299 hybrid contribution 0.022 0.182 0.808 0.829 sum -6.137 4.677 -26.444 27.547 Atomic orbital electron populations 1.22477 0.98874 1.01194 1.00153 1.20396 0.92279 0.95733 0.85840 0.92813 1.42270 1.78247 1.10659 1.04710 1.19190 1.37010 0.93952 0.87011 0.91065 1.24744 1.01898 0.95984 0.98076 1.69657 1.50546 1.08625 1.28969 0.86188 0.77307 0.78791 0.83857 1.21723 1.21769 1.20748 1.21596 0.94922 0.97745 0.82895 0.89089 1.22072 0.94215 1.02222 1.02688 1.45933 1.63483 1.14875 1.08795 1.19653 0.80225 0.87098 0.84392 1.90793 1.49161 1.15022 1.84570 1.20591 0.78475 0.87100 0.84514 1.90771 1.46529 1.14976 1.84773 1.43173 1.60131 1.17680 1.08521 1.17832 0.95851 0.93012 0.87890 1.20921 0.97713 1.00911 0.95300 1.20846 0.99808 0.92625 0.97736 1.20959 1.01284 0.93598 0.91814 1.98376 1.83594 1.80708 1.41638 1.20991 0.96364 1.00531 0.93075 1.21313 1.00509 0.93731 0.97293 0.94483 0.93334 0.92369 0.78014 0.93413 0.92698 0.89589 0.93296 0.75304 0.73577 0.84313 0.84348 0.84386 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.33 37.16 0.35 -2.51 16 2 C 0.17 3.07 2.52 -67.94 -0.17 2.90 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 N -0.72 -16.72 4.43 -53.43 -0.24 -16.96 16 5 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 6 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 7 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 8 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 9 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 C 0.13 2.10 2.21 -67.93 -0.15 1.95 16 14 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 15 C -0.15 -2.46 9.33 37.16 0.35 -2.11 16 16 N -0.68 -8.99 4.38 -54.27 -0.24 -9.23 16 17 C 0.51 6.64 7.85 -11.64 -0.09 6.55 16 18 O -0.52 -7.83 16.14 5.49 0.09 -7.74 16 19 C 0.51 5.83 7.73 -11.63 -0.09 5.74 16 20 O -0.50 -6.35 13.91 5.47 0.08 -6.27 16 21 N -0.65 -5.90 5.32 -10.29 -0.05 -5.95 16 22 C 0.15 1.32 6.30 -83.74 -0.53 0.79 16 23 C -0.13 -0.90 9.97 -39.38 -0.39 -1.29 16 24 C -0.09 -0.63 9.82 -39.58 -0.39 -1.02 16 25 C -0.05 -0.39 6.32 -39.47 -0.25 -0.64 16 26 Cl -0.07 -0.54 28.95 -51.86 -1.50 -2.04 16 27 C -0.09 -0.74 9.82 -39.58 -0.39 -1.12 16 28 C -0.11 -1.00 8.69 -39.38 -0.34 -1.34 16 29 H 0.04 0.53 7.45 -51.93 -0.39 0.15 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.39 9.66 7.58 -40.82 -0.31 9.35 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.57 7.45 -51.93 -0.39 1.19 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.41 4.92 7.86 -40.82 -0.32 4.59 16 38 H 0.43 3.18 8.30 -40.82 -0.34 2.84 16 39 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 42 H 0.15 1.50 6.22 -52.49 -0.33 1.17 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -30.14 375.77 -8.23 -38.37 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -5.39 Total: 12.79 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.34 Total: 1.02 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.20 Total: -58.53 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.16 Total: -14.01 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.14 -8.23 -38.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717414602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.779 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds