Wall clock time and date at job start Tue Mar 31 2020 22:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47551 * 2 1 4 4 C 1.52998 * 109.47326 * 239.99526 * 2 1 3 5 5 C 1.53000 * 109.47105 * 175.00559 * 4 2 1 6 6 N 1.46496 * 109.47315 * 179.97438 * 5 4 2 7 7 C 1.36936 * 120.00473 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99852 * 359.97438 * 7 6 5 9 9 C 1.38813 * 120.00639 * 179.97438 * 7 6 5 10 10 N 1.31613 * 120.00347 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99435 * 0.02562 * 9 7 6 12 12 H 1.48490 * 109.47182 * 90.00105 * 11 9 7 13 13 H 1.48504 * 109.46699 * 210.00030 * 11 9 7 14 14 H 1.48497 * 109.47160 * 329.99367 * 11 9 7 15 15 N 1.46503 * 109.46899 * 119.99155 * 2 1 3 16 16 C 1.34776 * 120.00417 * 275.00531 * 15 2 1 17 17 O 1.21356 * 119.99691 * 359.97438 * 16 15 2 18 18 C 1.49344 * 119.99982 * 180.02562 * 16 15 2 19 19 O 1.21376 * 120.00320 * 359.97438 * 18 16 15 20 20 N 1.34776 * 119.99982 * 180.02562 * 18 16 15 21 21 C 1.39766 * 120.00195 * 185.27306 * 20 18 16 22 22 C 1.38923 * 120.06332 * 213.61000 * 21 20 18 23 23 C 1.38089 * 119.93698 * 180.22962 * 22 21 20 24 24 C 1.38404 * 120.05855 * 359.50028 * 23 22 21 25 25 Cl 1.73597 * 119.93242 * 180.27282 * 24 23 22 26 26 C 1.38394 * 120.12697 * 0.24657 * 24 23 22 27 27 C 1.38088 * 120.06489 * 0.02562 * 26 24 23 28 28 H 1.08995 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47306 * 300.00734 * 1 2 3 30 30 H 1.09003 * 109.46409 * 60.00742 * 1 2 3 31 31 H 1.08996 * 109.47028 * 294.99861 * 4 2 1 32 32 H 1.09000 * 109.47187 * 55.00244 * 4 2 1 33 33 H 1.09010 * 109.46936 * 299.99981 * 5 4 2 34 34 H 1.08995 * 109.47875 * 59.99284 * 5 4 2 35 35 H 0.96999 * 119.99685 * 359.97438 * 6 5 4 36 36 H 0.96997 * 120.00186 * 179.97438 * 10 9 7 37 37 H 0.97005 * 119.99343 * 95.00194 * 15 2 1 38 38 H 0.97005 * 119.99780 * 5.26856 * 20 18 16 39 39 H 1.07999 * 120.03231 * 359.97438 * 22 21 20 40 40 H 1.08001 * 119.96956 * 179.77074 * 23 22 21 41 41 H 1.07998 * 119.96666 * 180.02562 * 26 24 23 42 42 H 1.08000 * 120.03130 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3135 6 7 4.0533 -1.3047 -2.5092 7 6 5.3954 -1.3408 -2.7790 8 1 6.0937 -0.8593 -2.1105 9 6 5.8583 -1.9962 -3.9118 10 7 7.1481 -2.0304 -4.1713 11 14 4.6503 -2.8283 -5.0684 12 1 4.2152 -1.8620 -6.1086 13 1 5.3073 -3.9915 -5.7171 14 1 3.4683 -3.2931 -4.2990 15 7 2.0183 -0.6905 1.1963 16 6 2.1469 -0.0180 2.3572 17 8 1.8587 1.1595 2.4115 18 6 2.6452 -0.7218 3.5766 19 8 2.9340 -1.8995 3.5222 20 7 2.7734 -0.0496 4.7376 21 6 3.3425 -0.6770 5.8493 22 6 2.8982 -0.3645 7.1280 23 6 3.4656 -0.9825 8.2248 24 6 4.4688 -1.9199 8.0505 25 17 5.1749 -2.7000 9.4313 26 6 4.9097 -2.2370 6.7776 27 6 4.3498 -1.6181 5.6774 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.7517 -1.7716 -1.2054 32 1 1.6055 -0.2619 -2.1369 33 1 3.8533 0.4369 -1.3572 34 1 3.9995 -1.0728 -0.4257 35 1 3.4261 -1.7367 -3.1098 36 1 7.4716 -2.4887 -4.9627 37 1 2.2490 -1.6317 1.1528 38 1 2.4706 0.8698 4.8017 39 1 2.1127 0.3640 7.2644 40 1 3.1232 -0.7373 9.2194 41 1 5.6924 -2.9692 6.6445 42 1 4.6940 -1.8662 4.6842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732711821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:02 Heat of formation + Delta-G solvation = -36.541309 kcal Electronic energy + Delta-G solvation = -25764.177275 eV Core-core repulsion = 21770.559009 eV Total energy + Delta-G solvation = -3993.618266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40429 -39.89855 -38.63681 -36.96270 -36.83358 -35.23949 -34.52927 -32.09309 -31.53504 -31.01748 -29.98268 -28.38493 -25.72058 -24.00456 -23.54162 -22.59807 -21.44755 -20.98239 -20.59273 -19.14658 -18.02733 -17.52981 -17.28334 -16.68450 -16.40712 -15.86314 -15.44600 -14.78178 -14.70755 -14.39014 -14.30388 -14.13046 -13.95477 -13.83090 -13.64371 -13.45239 -12.82586 -12.73981 -12.65060 -12.33822 -12.22103 -11.96661 -11.82839 -11.60483 -11.32004 -11.21558 -10.99313 -10.79650 -10.63016 -10.61971 -10.18106 -9.91076 -9.62114 -9.48128 -9.37973 -8.92489 -8.55337 -7.27169 -5.78968 -3.15327 0.48029 0.85489 1.23295 1.75494 1.98751 2.85705 3.24532 3.27217 3.34921 3.37196 3.43227 4.11115 4.34641 4.43061 4.56428 4.63089 4.78184 4.89670 4.97081 4.99554 5.10984 5.42774 5.43435 5.48247 5.52757 5.56132 5.66195 5.72408 5.76680 5.82133 5.83503 5.87614 6.03397 6.06759 6.15586 6.35125 6.58417 6.63156 6.66723 7.06118 7.38097 7.71194 7.96568 8.39615 9.18315 9.90364 10.09638 11.39379 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.002165 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.232841 B =12927.137219 C =14673.043712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.097 0.903 4 C -0.141 4.141 5 C 0.156 3.844 6 N -0.756 5.756 7 C -0.246 4.246 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.887 3.113 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.683 5.683 16 C 0.512 3.488 17 O -0.520 6.520 18 C 0.509 3.491 19 O -0.491 6.491 20 N -0.648 5.648 21 C 0.150 3.850 22 C -0.130 4.130 23 C -0.091 4.091 24 C -0.050 4.050 25 Cl -0.071 7.071 26 C -0.087 4.087 27 C -0.107 4.107 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.415 0.585 38 H 0.425 0.575 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.465 3.587 25.383 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.115 0.885 4 C -0.179 4.179 5 C 0.029 3.971 6 N -0.402 5.402 7 C -0.376 4.376 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.581 5.581 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.336 5.336 16 C 0.291 3.709 17 O -0.397 6.397 18 C 0.291 3.709 19 O -0.363 6.363 20 N -0.295 5.295 21 C 0.056 3.944 22 C -0.150 4.150 23 C -0.110 4.110 24 C -0.077 4.077 25 Cl -0.042 7.042 26 C -0.106 4.106 27 C -0.128 4.128 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.193 0.807 36 H 0.070 0.930 37 H 0.252 0.748 38 H 0.263 0.737 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.163 3.566 25.410 28.838 hybrid contribution -0.666 -0.734 -0.790 1.267 sum -13.829 2.832 24.620 28.380 Atomic orbital electron populations 1.22179 0.94708 1.02446 1.02740 1.21172 0.94046 0.97919 0.82938 0.88535 1.22147 0.98283 1.01082 0.96391 1.20635 0.89989 0.96114 0.90389 1.42689 1.05376 1.66050 1.26086 1.19050 0.82191 1.29484 1.06860 0.89283 1.24695 0.95639 1.00613 0.98267 1.69700 1.11741 1.48091 1.28587 0.86516 0.80847 0.79462 0.81483 1.21060 1.21699 1.20360 1.45956 1.63824 1.15187 1.08639 1.19694 0.79749 0.86970 0.84476 1.90776 1.49145 1.14979 1.84787 1.20472 0.78930 0.86967 0.84561 1.90825 1.46360 1.14827 1.84338 1.43168 1.59855 1.17484 1.08988 1.17798 0.93854 0.96410 0.86329 1.20866 1.01194 1.02699 0.90263 1.20835 0.95293 0.95365 0.99484 1.20954 0.99090 0.99041 0.88600 1.98377 1.83313 1.79982 1.42547 1.20992 0.99981 0.99752 0.89909 1.21210 0.94570 0.96708 1.00266 0.92197 0.92162 0.90989 0.91054 0.89762 0.95431 0.95554 0.80661 0.93015 0.74789 0.73667 0.84412 0.84368 0.84236 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.48 37.16 0.35 -1.18 16 2 C 0.14 1.64 2.57 -67.93 -0.17 1.46 16 3 H 0.10 1.20 7.58 -51.93 -0.39 0.81 16 4 C -0.14 -1.87 4.87 -26.73 -0.13 -2.00 16 5 C 0.16 2.87 6.15 -4.04 -0.02 2.85 16 6 N -0.76 -17.68 5.41 -59.91 -0.32 -18.00 16 7 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 10 N -0.93 -29.41 13.97 55.49 0.78 -28.64 16 11 Si 0.89 21.93 27.74 -169.99 -4.71 17.21 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 15 N -0.68 -7.86 4.52 -54.27 -0.25 -8.11 16 16 C 0.51 6.06 7.85 -11.64 -0.09 5.97 16 17 O -0.52 -6.88 16.15 5.49 0.09 -6.79 16 18 C 0.51 5.72 7.62 -11.64 -0.09 5.63 16 19 O -0.49 -6.50 14.16 5.47 0.08 -6.42 16 20 N -0.65 -5.81 5.32 -10.29 -0.05 -5.86 16 21 C 0.15 1.37 6.28 -83.73 -0.53 0.84 16 22 C -0.13 -0.91 9.96 -39.38 -0.39 -1.30 16 23 C -0.09 -0.64 9.82 -39.57 -0.39 -1.03 16 24 C -0.05 -0.42 6.32 -39.46 -0.25 -0.67 16 25 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.07 16 26 C -0.09 -0.78 9.82 -39.58 -0.39 -1.17 16 27 C -0.11 -1.09 8.65 -39.38 -0.34 -1.43 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 35 H 0.36 8.12 5.53 -40.82 -0.23 7.90 16 36 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 37 H 0.42 4.67 8.07 -40.82 -0.33 4.34 16 38 H 0.42 2.98 8.30 -40.82 -0.34 2.64 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.15 1.66 6.42 -52.49 -0.34 1.32 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -33.62 375.36 -8.36 -41.98 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.42 Total: 10.21 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -2.70 Total: 0.84 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.15 Total: -60.61 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.17 Total: -13.21 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.62 -8.36 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732711821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.443 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds