Wall clock time and date at job start Tue Mar 31 2020 23:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47375 * 2 1 4 4 C 1.53004 * 109.47374 * 239.99877 * 2 1 3 5 5 C 1.52994 * 109.47204 * 175.00292 * 4 2 1 6 6 N 1.46499 * 109.47410 * 179.97438 * 5 4 2 7 7 C 1.34773 * 120.00532 * 179.97438 * 6 5 4 8 8 O 1.21361 * 119.99722 * 0.02562 * 7 6 5 9 9 C 1.49344 * 120.00183 * 180.02562 * 7 6 5 10 10 O 1.21375 * 119.99904 * 0.02562 * 9 7 6 11 11 N 1.34783 * 119.99779 * 180.02562 * 9 7 6 12 12 C 1.39767 * 119.99550 * 175.38241 * 11 9 7 13 13 C 1.38926 * 120.05757 * 214.81924 * 12 11 9 14 14 C 1.38099 * 119.93184 * 179.76566 * 13 12 11 15 15 C 1.38394 * 120.06016 * 0.48896 * 14 13 12 16 16 Cl 1.73605 * 119.93218 * 179.74339 * 15 14 13 17 17 C 1.38394 * 120.13278 * 359.76848 * 15 14 13 18 18 C 1.38091 * 120.06122 * 359.97438 * 17 15 14 19 19 N 1.46500 * 109.46683 * 120.00143 * 2 1 3 20 20 C 1.36941 * 119.99964 * 274.99816 * 19 2 1 21 21 H 1.07994 * 119.99630 * 0.02562 * 20 19 2 22 22 C 1.38805 * 120.00020 * 179.72429 * 20 19 2 23 23 N 1.31625 * 119.99993 * 0.27952 * 22 20 19 24 24 Si 1.86802 * 120.00121 * 180.27390 * 22 20 19 25 25 H 1.48498 * 109.47001 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47097 * 120.00179 * 24 22 20 27 27 H 1.48502 * 109.47433 * 240.00194 * 24 22 20 28 28 H 1.08995 * 109.47494 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47146 * 300.00558 * 1 2 3 30 30 H 1.09004 * 109.46493 * 59.99790 * 1 2 3 31 31 H 1.09000 * 109.46758 * 295.00164 * 4 2 1 32 32 H 1.09000 * 109.46927 * 54.99907 * 4 2 1 33 33 H 1.09000 * 109.47265 * 300.00171 * 5 4 2 34 34 H 1.09000 * 109.46970 * 59.99989 * 5 4 2 35 35 H 0.97004 * 119.99227 * 0.02562 * 6 5 4 36 36 H 0.96990 * 120.00082 * 355.37799 * 11 9 7 37 37 H 1.07996 * 120.03488 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.96461 * 180.23396 * 14 13 12 39 39 H 1.08000 * 119.97338 * 179.97438 * 17 15 14 40 40 H 1.08002 * 120.03556 * 179.97438 * 18 17 15 41 41 H 0.97004 * 120.00333 * 95.00082 * 19 2 1 42 42 H 0.97005 * 119.99795 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 7 4.0534 -1.3045 -2.5094 7 6 5.3742 -1.3400 -2.7750 8 8 6.1590 -0.7998 -2.0233 9 6 5.8720 -2.0441 -3.9944 10 8 5.0871 -2.5839 -4.7464 11 7 7.1930 -2.0800 -4.2596 12 6 7.6676 -2.8195 -5.3465 13 6 8.8936 -3.4677 -5.2650 14 6 9.3578 -4.2017 -6.3387 15 6 8.6075 -4.2835 -7.4988 16 17 9.1973 -5.2016 -8.8489 17 6 7.3883 -3.6343 -7.5848 18 6 6.9167 -2.9033 -6.5124 19 7 2.0182 -0.6907 1.1962 20 6 2.1490 -0.0075 2.3758 21 1 1.8918 1.0402 2.4243 22 6 2.6062 -0.6633 3.5106 23 7 2.9192 -1.9404 3.4515 24 14 2.7773 0.2667 5.1216 25 1 2.3636 1.6792 4.9241 26 1 1.9116 -0.3628 6.1509 27 1 4.1921 0.2229 5.5706 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1370 33 1 3.8533 0.4369 -1.3572 34 1 3.9994 -1.0729 -0.4258 35 1 3.4260 -1.7360 -3.1104 36 1 7.8142 -1.5926 -3.6964 37 1 9.4815 -3.4005 -4.3615 38 1 10.3091 -4.7090 -6.2745 39 1 6.8051 -3.6995 -8.4915 40 1 5.9653 -2.3965 -6.5801 41 1 2.2489 -1.6319 1.1527 42 1 3.2383 -2.3987 4.2446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753008657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:54 Heat of formation + Delta-G solvation = -40.654199 kcal Electronic energy + Delta-G solvation = -25457.679742 eV Core-core repulsion = 21463.883128 eV Total energy + Delta-G solvation = -3993.796614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33193 -39.71326 -38.49251 -36.90480 -36.73357 -35.35925 -34.37700 -32.30520 -31.54523 -30.08354 -29.46342 -28.24686 -25.53572 -23.88387 -23.54440 -22.86471 -21.90249 -20.66634 -19.90189 -18.94155 -17.95183 -17.30599 -17.18603 -16.48517 -16.29719 -15.68815 -15.43260 -14.98196 -14.75764 -14.48578 -14.13422 -13.97364 -13.93521 -13.72046 -13.54307 -13.01095 -12.84362 -12.56253 -12.33506 -12.10594 -11.97344 -11.77217 -11.59579 -11.23741 -11.19433 -10.98883 -10.80715 -10.67962 -10.60244 -10.31271 -10.01485 -9.76561 -9.67202 -9.48278 -9.14540 -8.93087 -8.57698 -6.98549 -5.77985 -3.07017 0.49404 0.84288 1.28303 1.73589 2.06629 2.94703 3.23895 3.37898 3.42918 3.48680 3.50772 4.21975 4.35969 4.42806 4.58295 4.77642 4.88745 4.99986 5.15385 5.31486 5.42648 5.51195 5.51810 5.60547 5.74249 5.79109 5.80588 5.85546 5.98818 6.09949 6.17716 6.29227 6.31718 6.36045 6.47305 6.62145 6.65672 6.81938 7.02440 7.16530 7.44894 7.70047 7.85813 8.40210 9.51797 10.07803 10.42290 11.44559 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.001769 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.522760 B =15825.412367 C =16629.648203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.119 3.881 6 N -0.691 5.691 7 C 0.504 3.496 8 O -0.513 6.513 9 C 0.512 3.488 10 O -0.500 6.500 11 N -0.647 5.647 12 C 0.148 3.852 13 C -0.127 4.127 14 C -0.091 4.091 15 C -0.049 4.049 16 Cl -0.072 7.072 17 C -0.091 4.091 18 C -0.108 4.108 19 N -0.724 5.724 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.410 0.590 36 H 0.426 0.574 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.383 0.617 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.394 -2.974 -24.519 26.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.173 4.173 5 C -0.003 4.003 6 N -0.343 5.343 7 C 0.283 3.717 8 O -0.389 6.389 9 C 0.295 3.705 10 O -0.373 6.373 11 N -0.294 5.294 12 C 0.054 3.946 13 C -0.148 4.148 14 C -0.110 4.110 15 C -0.076 4.076 16 Cl -0.043 7.043 17 C -0.110 4.110 18 C -0.129 4.129 19 N -0.366 5.366 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.245 0.755 36 H 0.265 0.735 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.167 0.833 41 H 0.217 0.783 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.397 -2.884 -24.402 26.681 hybrid contribution 0.193 -0.014 0.894 0.915 sum 10.590 -2.898 -23.508 25.945 Atomic orbital electron populations 1.22420 0.98985 1.00929 1.00042 1.20154 0.92007 0.95565 0.85860 0.93156 1.22094 0.93276 1.02241 0.99690 1.21689 0.95057 0.97336 0.86246 1.45942 1.06281 1.54645 1.27416 1.19660 0.84145 0.82075 0.85847 1.90829 1.55072 1.44517 1.48446 1.20567 0.82636 0.80670 0.86669 1.90760 1.55010 1.43280 1.48271 1.43174 1.08320 1.48723 1.29222 1.17840 0.94636 0.94949 0.87177 1.20940 0.96242 0.97901 0.99693 1.20853 1.00084 0.98867 0.91177 1.20958 0.96347 0.99990 0.90354 1.98375 1.88249 1.72818 1.44876 1.20981 0.94165 0.96433 0.99425 1.21299 1.01209 0.99925 0.90433 1.42475 1.78104 1.10665 1.05383 1.19265 1.36558 0.93853 0.87250 0.91103 1.24736 1.02193 0.95951 0.98054 1.69668 1.51037 1.08623 1.28706 0.86144 0.77294 0.78788 0.84117 1.20574 1.21965 1.21888 0.93460 0.92657 0.94509 0.91280 0.91582 0.90968 0.88953 0.75472 0.73508 0.84248 0.84317 0.84403 0.83260 0.78283 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.49 37.16 0.35 -2.40 16 2 C 0.17 3.18 2.89 -67.93 -0.20 2.99 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 C -0.13 -1.93 4.87 -26.73 -0.13 -2.06 16 5 C 0.12 1.81 5.56 -4.05 -0.02 1.78 16 6 N -0.69 -8.91 5.55 -60.77 -0.34 -9.25 16 7 C 0.50 6.84 7.89 -11.64 -0.09 6.75 16 8 O -0.51 -8.35 16.48 5.49 0.09 -8.26 16 9 C 0.51 6.00 7.73 -11.63 -0.09 5.91 16 10 O -0.50 -6.38 13.91 5.48 0.08 -6.31 16 11 N -0.65 -6.18 5.32 -10.29 -0.05 -6.24 16 12 C 0.15 1.36 6.30 -83.73 -0.53 0.84 16 13 C -0.13 -0.95 9.97 -39.38 -0.39 -1.34 16 14 C -0.09 -0.66 9.82 -39.58 -0.39 -1.04 16 15 C -0.05 -0.40 6.32 -39.47 -0.25 -0.65 16 16 Cl -0.07 -0.55 28.95 -51.86 -1.50 -2.05 16 17 C -0.09 -0.75 9.82 -39.58 -0.39 -1.13 16 18 C -0.11 -1.01 8.69 -39.38 -0.34 -1.36 16 19 N -0.72 -17.11 4.57 -53.43 -0.24 -17.35 16 20 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 24 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.75 7.75 -51.93 -0.40 1.35 16 35 H 0.41 4.47 7.94 -40.82 -0.32 4.15 16 36 H 0.43 3.44 8.30 -40.82 -0.34 3.10 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.15 1.48 6.22 -52.49 -0.33 1.16 16 41 H 0.38 9.70 7.80 -40.82 -0.32 9.38 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -31.55 378.75 -8.76 -40.30 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.48 Total: 12.01 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.71 Total: 1.25 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.09 Total: -59.86 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.17 Total: -14.57 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.55 -8.76 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753008657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.353 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds