Wall clock time and date at job start Tue Mar 31 2020 23:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47375 * 2 1 4 4 C 1.53004 * 109.47374 * 239.99877 * 2 1 3 5 5 C 1.52994 * 109.47204 * 175.00292 * 4 2 1 6 6 N 1.46499 * 109.47410 * 179.97438 * 5 4 2 7 7 C 1.34773 * 120.00532 * 179.97438 * 6 5 4 8 8 O 1.21361 * 119.99722 * 0.02562 * 7 6 5 9 9 C 1.49344 * 120.00183 * 180.02562 * 7 6 5 10 10 O 1.21375 * 119.99904 * 0.02562 * 9 7 6 11 11 N 1.34783 * 119.99779 * 180.02562 * 9 7 6 12 12 C 1.39767 * 119.99550 * 175.38241 * 11 9 7 13 13 C 1.38926 * 120.05757 * 214.81924 * 12 11 9 14 14 C 1.38099 * 119.93184 * 179.76566 * 13 12 11 15 15 C 1.38394 * 120.06016 * 0.48896 * 14 13 12 16 16 Cl 1.73605 * 119.93218 * 179.74339 * 15 14 13 17 17 C 1.38394 * 120.13278 * 359.76848 * 15 14 13 18 18 C 1.38091 * 120.06122 * 359.97438 * 17 15 14 19 19 N 1.46500 * 109.46683 * 120.00143 * 2 1 3 20 20 C 1.36941 * 119.99964 * 274.99816 * 19 2 1 21 21 H 1.07994 * 119.99630 * 0.02562 * 20 19 2 22 22 C 1.38805 * 120.00020 * 179.72429 * 20 19 2 23 23 N 1.31625 * 119.99993 * 0.27952 * 22 20 19 24 24 Si 1.86802 * 120.00121 * 180.27390 * 22 20 19 25 25 H 1.48498 * 109.47001 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47097 * 120.00179 * 24 22 20 27 27 H 1.48502 * 109.47433 * 240.00194 * 24 22 20 28 28 H 1.08995 * 109.47494 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47146 * 300.00558 * 1 2 3 30 30 H 1.09004 * 109.46493 * 59.99790 * 1 2 3 31 31 H 1.09000 * 109.46758 * 295.00164 * 4 2 1 32 32 H 1.09000 * 109.46927 * 54.99907 * 4 2 1 33 33 H 1.09000 * 109.47265 * 300.00171 * 5 4 2 34 34 H 1.09000 * 109.46970 * 59.99989 * 5 4 2 35 35 H 0.97004 * 119.99227 * 0.02562 * 6 5 4 36 36 H 0.96990 * 120.00082 * 355.37799 * 11 9 7 37 37 H 1.07996 * 120.03488 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.96461 * 180.23396 * 14 13 12 39 39 H 1.08000 * 119.97338 * 179.97438 * 17 15 14 40 40 H 1.08002 * 120.03556 * 179.97438 * 18 17 15 41 41 H 0.97004 * 120.00333 * 95.00082 * 19 2 1 42 42 H 0.97005 * 119.99795 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 7 4.0534 -1.3045 -2.5094 7 6 5.3742 -1.3400 -2.7750 8 8 6.1590 -0.7998 -2.0233 9 6 5.8720 -2.0441 -3.9944 10 8 5.0871 -2.5839 -4.7464 11 7 7.1930 -2.0800 -4.2596 12 6 7.6676 -2.8195 -5.3465 13 6 8.8936 -3.4677 -5.2650 14 6 9.3578 -4.2017 -6.3387 15 6 8.6075 -4.2835 -7.4988 16 17 9.1973 -5.2016 -8.8489 17 6 7.3883 -3.6343 -7.5848 18 6 6.9167 -2.9033 -6.5124 19 7 2.0182 -0.6907 1.1962 20 6 2.1490 -0.0075 2.3758 21 1 1.8918 1.0402 2.4243 22 6 2.6062 -0.6633 3.5106 23 7 2.9192 -1.9404 3.4515 24 14 2.7773 0.2667 5.1216 25 1 2.3636 1.6792 4.9241 26 1 1.9116 -0.3628 6.1509 27 1 4.1921 0.2229 5.5706 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1370 33 1 3.8533 0.4369 -1.3572 34 1 3.9994 -1.0729 -0.4258 35 1 3.4260 -1.7360 -3.1104 36 1 7.8142 -1.5926 -3.6964 37 1 9.4815 -3.4005 -4.3615 38 1 10.3091 -4.7090 -6.2745 39 1 6.8051 -3.6995 -8.4915 40 1 5.9653 -2.3965 -6.5801 41 1 2.2489 -1.6319 1.1527 42 1 3.2383 -2.3987 4.2446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753008657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:53 Heat of formation + Delta-G solvation = -62.005717 kcal Electronic energy + Delta-G solvation = -25458.605613 eV Core-core repulsion = 21463.883128 eV Total energy + Delta-G solvation = -3994.722485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.23500 -40.60861 -39.38894 -38.19024 -37.54261 -36.36841 -35.56419 -34.12754 -32.15871 -31.21747 -30.69603 -29.71214 -26.58709 -25.70767 -24.32508 -23.87394 -22.84648 -21.79691 -21.17035 -19.95694 -19.21000 -18.72008 -18.02343 -17.46251 -17.22717 -16.84415 -16.68258 -16.22039 -15.80736 -15.54418 -15.33783 -15.24495 -15.07819 -14.57656 -14.55240 -14.30873 -14.12723 -13.59189 -13.51449 -13.24540 -13.00942 -12.86174 -12.81009 -12.63309 -12.53481 -12.30701 -12.22762 -12.09084 -11.85876 -11.61082 -11.58556 -11.32759 -10.95662 -10.80995 -10.32650 -10.10913 -9.26633 -8.96332 -7.91194 -5.17827 -0.26377 0.23351 0.37677 1.05196 1.18990 1.47789 1.48422 1.57684 1.95843 2.44656 2.57315 2.58439 3.23703 3.43331 3.75658 3.85197 3.89918 3.96735 4.15856 4.20735 4.26201 4.34482 4.36541 4.67108 4.75102 4.79367 4.85755 4.93319 5.00287 5.05223 5.08476 5.16462 5.17479 5.19223 5.26244 5.40795 5.56826 5.62891 5.66846 5.80954 6.20224 6.31971 6.55380 6.81382 7.38165 8.15804 8.36908 9.32388 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.001769 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.522760 B =15825.412367 C =16629.648203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.165 3.835 3 H 0.049 0.951 4 C -0.120 4.120 5 C 0.129 3.871 6 N -0.681 5.681 7 C 0.504 3.496 8 O -0.544 6.544 9 C 0.519 3.481 10 O -0.512 6.512 11 N -0.635 5.635 12 C 0.129 3.871 13 C -0.122 4.122 14 C -0.090 4.090 15 C -0.055 4.055 16 Cl -0.069 7.069 17 C -0.095 4.095 18 C -0.119 4.119 19 N -0.735 5.735 20 C -0.230 4.230 21 H 0.076 0.924 22 C -0.079 4.079 23 N -0.970 5.970 24 Si 0.965 3.035 25 H -0.266 1.266 26 H -0.296 1.296 27 H -0.298 1.298 28 H 0.043 0.957 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.422 0.578 36 H 0.433 0.567 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.372 0.628 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.504 -2.549 -26.193 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.056 3.944 3 H 0.067 0.933 4 C -0.158 4.158 5 C 0.006 3.994 6 N -0.333 5.333 7 C 0.284 3.716 8 O -0.422 6.422 9 C 0.301 3.699 10 O -0.386 6.386 11 N -0.282 5.282 12 C 0.035 3.965 13 C -0.142 4.142 14 C -0.109 4.109 15 C -0.082 4.082 16 Cl -0.040 7.040 17 C -0.114 4.114 18 C -0.140 4.140 19 N -0.376 5.376 20 C -0.362 4.362 21 H 0.094 0.906 22 C -0.271 4.271 23 N -0.621 5.621 24 Si 0.796 3.204 25 H -0.190 1.190 26 H -0.224 1.224 27 H -0.225 1.225 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.260 0.740 36 H 0.273 0.727 37 H 0.178 0.822 38 H 0.178 0.822 39 H 0.168 0.832 40 H 0.158 0.842 41 H 0.204 0.796 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.488 -2.428 -26.138 28.268 hybrid contribution 0.186 -0.131 1.271 1.291 sum 10.674 -2.559 -24.867 27.182 Atomic orbital electron populations 1.22273 0.97278 1.00988 1.00904 1.20452 0.93068 0.95404 0.85435 0.93339 1.21956 0.92365 1.02278 0.99219 1.21375 0.95612 0.96826 0.85545 1.45772 1.06523 1.54259 1.26765 1.20017 0.83984 0.81529 0.86114 1.90813 1.55814 1.45889 1.49665 1.20104 0.83349 0.80611 0.85851 1.90761 1.55466 1.44019 1.48397 1.43070 1.07572 1.48321 1.29264 1.18028 0.95562 0.95889 0.86974 1.21176 0.95531 0.96928 1.00546 1.21136 1.00714 0.98434 0.90599 1.21117 0.96407 0.99872 0.90790 1.98378 1.88148 1.72682 1.44762 1.21111 0.94489 0.96175 0.99606 1.21293 1.01121 1.00480 0.91062 1.42674 1.78325 1.10258 1.06311 1.19641 1.34121 0.94096 0.88314 0.90630 1.25476 1.03529 0.96840 1.01257 1.69815 1.53186 1.10099 1.29005 0.85179 0.76539 0.78331 0.80400 1.19000 1.22399 1.22548 0.93796 0.94783 0.90628 0.91064 0.87565 0.91242 0.93182 0.74034 0.72733 0.82157 0.82215 0.83229 0.84170 0.79631 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 9.49 71.98 0.68 -4.19 16 2 C 0.16 5.80 2.89 44.99 0.13 5.93 16 3 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 4 C -0.12 -3.21 4.87 30.59 0.15 -3.06 16 5 C 0.13 3.89 5.56 86.38 0.48 4.37 16 6 N -0.68 -17.04 5.55 -464.53 -2.58 -19.62 16 7 C 0.50 13.55 7.89 87.24 0.69 14.24 16 8 O -0.54 -17.90 16.48 -3.28 -0.05 -17.95 16 9 C 0.52 11.85 7.73 87.24 0.67 12.53 16 10 O -0.51 -12.69 13.91 -3.32 -0.05 -12.74 16 11 N -0.64 -11.65 5.32 -304.81 -1.62 -13.27 16 12 C 0.13 2.23 6.30 38.21 0.24 2.47 16 13 C -0.12 -1.59 9.97 22.40 0.22 -1.37 16 14 C -0.09 -1.11 9.82 22.27 0.22 -0.89 16 15 C -0.05 -0.79 6.32 22.34 0.14 -0.65 16 16 Cl -0.07 -0.94 28.95 -2.72 -0.08 -1.02 16 17 C -0.09 -1.45 9.82 22.27 0.22 -1.23 16 18 C -0.12 -2.14 8.69 22.40 0.19 -1.95 16 19 N -0.73 -34.96 4.57 -322.94 -1.48 -36.43 16 20 C -0.23 -12.39 9.93 84.03 0.83 -11.56 16 21 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 22 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 23 N -0.97 -59.20 13.06 21.65 0.28 -58.91 16 24 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.05 1.96 7.75 -2.39 -0.02 1.94 16 35 H 0.42 8.55 7.94 -92.71 -0.74 7.82 16 36 H 0.43 6.68 8.30 -92.72 -0.77 5.91 16 37 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.14 2.75 6.22 -2.91 -0.02 2.73 16 41 H 0.37 19.24 7.80 -92.71 -0.72 18.52 16 42 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 Total: -1.00 -68.88 378.75 0.65 -68.22 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -1.14 Total: 32.80 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.34 Total: 10.60 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -5.39 Total: -128.24 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.10 Total: -30.69 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -68.88 0.65 -68.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753008657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.216 kcal (2) G-P(sol) polarization free energy of solvation -68.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds