Wall clock time and date at job start Tue Mar 31 2020 23:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46638 * 2 1 4 4 N 1.46498 * 109.47023 * 240.00216 * 2 1 3 5 5 C 1.36935 * 120.00071 * 85.00372 * 4 2 1 6 6 H 1.08004 * 120.00029 * 359.97438 * 5 4 2 7 7 C 1.38817 * 120.00216 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00109 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99746 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46821 * 90.00472 * 9 7 5 11 11 H 1.48500 * 109.47448 * 210.00324 * 9 7 5 12 12 H 1.48501 * 109.47558 * 330.00845 * 9 7 5 13 13 C 1.52995 * 109.46904 * 120.00322 * 2 1 3 14 14 H 1.09000 * 109.55825 * 299.87378 * 13 2 1 15 15 C 1.53300 * 109.51064 * 179.74556 * 13 2 1 16 16 N 1.47158 * 108.38375 * 187.76961 * 15 13 2 17 17 C 1.34769 * 120.98361 * 230.51043 * 16 15 13 18 18 O 1.21553 * 120.00172 * 356.22940 * 17 16 15 19 19 C 1.47842 * 119.99761 * 176.22091 * 17 16 15 20 20 C 1.39554 * 120.55406 * 48.27358 * 19 17 16 21 21 N 1.31665 * 120.59769 * 180.02562 * 20 19 17 22 22 C 1.31948 * 121.89550 * 359.97438 * 21 20 19 23 23 C 1.38430 * 121.05951 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.36068 * 180.02562 * 23 22 21 25 25 C 1.38518 * 119.27900 * 359.71694 * 23 22 21 26 26 C 1.47157 * 118.03230 * 50.54175 * 16 15 13 27 27 C 1.53304 * 108.37964 * 309.45878 * 26 16 15 28 28 O 1.42957 * 109.22509 * 52.30828 * 27 26 16 29 29 H 1.09003 * 109.47165 * 299.99690 * 1 2 3 30 30 H 1.09006 * 109.47293 * 60.00108 * 1 2 3 31 31 H 1.09001 * 109.47322 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99789 * 264.99956 * 4 2 1 33 33 H 0.96999 * 119.99889 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.67975 * 68.04939 * 15 13 2 35 35 H 1.08999 * 109.68134 * 307.49596 * 15 13 2 36 36 H 1.08004 * 119.70311 * 359.97327 * 20 19 17 37 37 H 1.08000 * 119.47064 * 179.97438 * 22 21 20 38 38 H 1.07994 * 120.86279 * 180.27338 * 25 23 22 39 39 H 1.08999 * 109.67842 * 189.74074 * 26 16 15 40 40 H 1.08996 * 109.68498 * 69.18130 * 26 16 15 41 41 H 1.09002 * 109.51395 * 292.37739 * 27 26 16 42 42 H 1.09005 * 109.50677 * 172.22908 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1492 -0.0074 -2.3757 6 1 1.8920 1.0405 -2.4243 7 6 2.6114 -0.6618 -3.5093 8 7 2.7366 -0.0053 -4.6432 9 14 3.0555 -2.4743 -3.4255 10 1 1.8580 -3.2926 -3.7445 11 1 4.1305 -2.7666 -4.4074 12 1 3.5309 -2.8049 -2.0580 13 6 2.0399 -0.7213 1.2492 14 1 1.6792 -0.2073 2.1401 15 6 3.5729 -0.7274 1.2469 16 7 4.0352 -1.5830 2.3514 17 6 4.9544 -1.1419 3.2328 18 8 5.4647 -0.0489 3.0830 19 6 5.3418 -1.9873 4.3820 20 6 5.6697 -3.3310 4.1957 21 7 6.0144 -4.0848 5.2187 22 6 6.0651 -3.6101 6.4487 23 6 5.7546 -2.2881 6.7174 24 17 5.8279 -1.6825 8.3427 25 6 5.3911 -1.4521 5.6745 26 6 3.4648 -2.9348 2.4645 27 6 1.9370 -2.8210 2.4074 28 8 1.5639 -2.0694 1.2501 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2490 -1.6317 -1.1526 33 1 3.0599 -0.4625 -5.4352 34 1 3.9442 0.2875 1.3887 35 1 3.9371 -1.1231 0.2988 36 1 5.6397 -3.7565 3.2035 37 1 6.3525 -4.2637 7.2591 38 1 5.1480 -0.4154 5.8544 39 1 3.7644 -3.3815 3.4124 40 1 3.8180 -3.5526 1.6389 41 1 1.5759 -2.3147 3.3025 42 1 1.4997 -3.8179 2.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755461470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:17 Heat of formation + Delta-G solvation = -17.022614 kcal Electronic energy + Delta-G solvation = -27472.024923 eV Core-core repulsion = 23479.253052 eV Total energy + Delta-G solvation = -3992.771871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35263 -39.97364 -38.49313 -37.20720 -35.79335 -34.82216 -33.16096 -32.42499 -31.86745 -30.47041 -28.98642 -28.02603 -25.25887 -24.52814 -23.89315 -23.34236 -22.37307 -20.07076 -19.81550 -18.21827 -17.72763 -17.67988 -17.24613 -16.55802 -16.25690 -15.59813 -15.54324 -15.10820 -14.69623 -14.63237 -14.37876 -14.20930 -13.83809 -13.62298 -13.32931 -13.13222 -12.92470 -12.68772 -12.48999 -12.21809 -12.03002 -11.79590 -11.73313 -11.38276 -11.01896 -10.89244 -10.81895 -10.66497 -10.42554 -10.30350 -10.10360 -10.03768 -9.88367 -9.57690 -9.50629 -8.98292 -8.65569 -7.26980 -5.76823 -3.12193 0.07315 0.42011 1.38479 2.30880 2.56288 3.04443 3.37484 3.42067 3.46081 3.70508 3.74299 3.94492 4.06674 4.17102 4.54428 4.56853 4.59640 4.63958 4.75190 4.89679 5.05540 5.13724 5.20722 5.24443 5.31206 5.48649 5.51220 5.53075 5.58018 5.72461 5.77906 6.05164 6.09385 6.24671 6.28612 6.43766 6.67382 7.01098 7.03846 7.13228 7.23221 7.77675 7.99504 8.42270 9.21430 9.93351 10.14167 11.41423 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019479 B = 0.002806 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.087229 B = 9977.386921 C =10305.896485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.189 3.811 3 H 0.070 0.930 4 N -0.742 5.742 5 C -0.243 4.243 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.884 3.116 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.277 1.277 13 C 0.074 3.926 14 H 0.061 0.939 15 C 0.085 3.915 16 N -0.603 5.603 17 C 0.563 3.437 18 O -0.522 6.522 19 C -0.161 4.161 20 C 0.132 3.868 21 N -0.466 5.466 22 C 0.130 3.870 23 C -0.094 4.094 24 Cl -0.045 7.045 25 C -0.017 4.017 26 C 0.059 3.941 27 C 0.048 3.952 28 O -0.361 6.361 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.367 0.633 33 H 0.259 0.741 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.154 0.846 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 -8.172 26.291 27.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 H 0.088 0.912 4 N -0.386 5.386 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.715 3.285 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.203 1.203 13 C 0.015 3.985 14 H 0.079 0.921 15 C -0.037 4.037 16 N -0.336 5.336 17 C 0.349 3.651 18 O -0.398 6.398 19 C -0.166 4.166 20 C -0.025 4.025 21 N -0.174 5.174 22 C -0.027 4.027 23 C -0.123 4.123 24 Cl -0.016 7.016 25 C -0.044 4.044 26 C -0.064 4.064 27 C -0.030 4.030 28 O -0.280 6.280 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.200 0.800 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.189 0.811 37 H 0.188 0.812 38 H 0.172 0.828 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.610 -8.290 25.850 27.386 hybrid contribution 0.294 -0.380 0.441 0.652 sum 3.904 -8.670 26.291 27.957 Atomic orbital electron populations 1.22321 0.97903 1.01632 1.00248 1.20232 0.93021 0.94904 0.83982 0.91243 1.42729 1.79341 1.09766 1.06786 1.19067 1.37035 0.95567 0.85615 0.89153 1.24651 1.01430 0.97400 0.95530 1.69699 1.52591 1.35570 1.00233 0.86556 0.78072 0.86993 0.76903 1.21113 1.21944 1.20336 1.23012 0.91943 0.83397 1.00136 0.92072 1.22549 0.95109 0.96777 0.89223 1.48151 1.40765 1.15852 1.28855 1.17949 0.79628 0.85876 0.81642 1.90846 1.53048 1.21162 1.74749 1.20998 1.05095 0.95954 0.94587 1.23273 0.91509 0.88807 0.98947 1.67919 1.13190 1.37326 0.98944 1.23037 0.93259 0.91526 0.94909 1.21990 1.06499 0.95819 0.87955 1.98408 1.96810 1.87769 1.18591 1.21569 0.92595 1.00593 0.89668 1.22832 0.96035 0.84015 1.03523 1.22901 0.92570 0.97787 0.89714 1.88087 1.75195 1.23810 1.40860 0.94497 0.92189 0.92625 0.79957 0.93082 0.87863 0.88555 0.81077 0.81155 0.82788 0.88965 0.89498 0.92930 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.35 37.16 0.35 -2.41 16 2 C 0.19 3.44 2.74 -67.93 -0.19 3.25 16 3 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 4 N -0.74 -16.76 4.09 -53.43 -0.22 -16.98 16 5 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 6 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 7 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.00 13.97 55.49 0.78 -28.22 16 9 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 12 H -0.28 -6.41 6.52 56.52 0.37 -6.05 16 13 C 0.07 1.12 2.53 -26.58 -0.07 1.05 16 14 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 15 C 0.08 1.31 5.85 -3.53 -0.02 1.29 16 16 N -0.60 -7.69 3.02 -173.38 -0.52 -8.21 16 17 C 0.56 7.43 7.30 -12.33 -0.09 7.34 16 18 O -0.52 -8.78 16.52 5.32 0.09 -8.70 16 19 C -0.16 -1.64 5.08 -104.83 -0.53 -2.17 16 20 C 0.13 1.18 8.56 -17.13 -0.15 1.04 16 21 N -0.47 -4.13 10.34 -12.88 -0.13 -4.27 16 22 C 0.13 0.96 10.97 -17.43 -0.19 0.77 16 23 C -0.09 -0.73 6.34 -39.41 -0.25 -0.98 16 24 Cl -0.04 -0.31 28.98 -51.86 -1.50 -1.81 16 25 C -0.02 -0.16 9.68 -38.83 -0.38 -0.53 16 26 C 0.06 0.58 5.42 -3.53 -0.02 0.56 16 27 C 0.05 0.50 6.98 37.31 0.26 0.76 16 28 O -0.36 -5.32 9.22 -35.23 -0.32 -5.65 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.97 7.68 -51.93 -0.40 0.57 16 32 H 0.37 8.35 5.06 -40.82 -0.21 8.14 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.10 1.68 7.11 -51.93 -0.37 1.31 16 35 H 0.10 1.73 7.26 -51.93 -0.38 1.35 16 36 H 0.17 1.30 6.87 -52.48 -0.36 0.94 16 37 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.09 0.70 4.66 -51.93 -0.24 0.46 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -33.02 359.39 -8.01 -41.03 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.35 Total: 6.92 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.52 Total: 3.25 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.10 Total: -57.68 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.24 Total: -14.34 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.50 Total: -1.81 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.02 -8.01 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755461470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.010 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds