Wall clock time and date at job start Tue Mar 31 2020 23:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 N 1.46498 * 109.47141 * 119.99530 * 2 1 3 5 5 C 1.36935 * 120.00191 * 275.00099 * 4 2 1 6 6 H 1.08001 * 120.00110 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99696 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00580 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99661 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47453 * 59.99453 * 9 7 5 11 11 H 1.48507 * 109.47203 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47188 * 299.99432 * 9 7 5 13 13 C 1.53007 * 109.47110 * 239.99935 * 2 1 3 14 14 H 1.08996 * 109.51148 * 185.10112 * 13 2 1 15 15 C 1.53296 * 109.51024 * 64.99927 * 13 2 1 16 16 N 1.47153 * 108.37901 * 187.77536 * 15 13 2 17 17 C 1.34778 * 120.98139 * 230.55417 * 16 15 13 18 18 O 1.21549 * 120.00027 * 356.20138 * 17 16 15 19 19 C 1.47847 * 120.00053 * 176.19833 * 17 16 15 20 20 C 1.39559 * 120.55049 * 48.27543 * 19 17 16 21 21 N 1.31663 * 120.59089 * 179.97438 * 20 19 17 22 22 C 1.31940 * 121.89835 * 359.97438 * 21 20 19 23 23 C 1.38433 * 121.05870 * 0.02686 * 22 21 20 24 24 Cl 1.73601 * 120.35753 * 179.97438 * 23 22 21 25 25 C 1.38508 * 119.27908 * 359.69850 * 23 22 21 26 26 C 1.47153 * 118.03680 * 50.53752 * 16 15 13 27 27 C 1.53295 * 108.38336 * 309.45811 * 26 16 15 28 28 O 1.42960 * 109.50890 * 305.24942 * 13 2 1 29 29 H 1.09001 * 109.47324 * 300.00311 * 1 2 3 30 30 H 1.08999 * 109.47617 * 60.00372 * 1 2 3 31 31 H 1.08997 * 109.47485 * 180.02562 * 1 2 3 32 32 H 0.97007 * 119.99835 * 95.00084 * 4 2 1 33 33 H 0.96992 * 120.00203 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.68373 * 307.49242 * 15 13 2 35 35 H 1.08994 * 109.68209 * 68.05583 * 15 13 2 36 36 H 1.07998 * 119.70274 * 359.94712 * 20 19 17 37 37 H 1.07996 * 119.47303 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.86263 * 180.29834 * 25 23 22 39 39 H 1.08996 * 109.68800 * 69.18611 * 26 16 15 40 40 H 1.09008 * 109.68060 * 189.74277 * 26 16 15 41 41 H 1.09005 * 109.51379 * 172.22580 * 27 26 16 42 42 H 1.08993 * 109.51899 * 292.32997 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3757 6 1 1.8926 1.0407 2.4241 7 6 2.6123 -0.6616 3.5090 8 7 2.9253 -1.9387 3.4500 9 14 2.7900 0.2702 5.1182 10 1 1.4673 0.8061 5.5287 11 1 3.2991 -0.6481 6.1684 12 1 3.7445 1.3934 4.9371 13 6 2.0400 -0.7213 -1.2493 14 1 3.1261 -0.8015 -1.2055 15 6 1.6349 0.0697 -2.4984 16 7 1.9697 -0.7336 -3.6850 17 6 2.6770 -0.2053 -4.7034 18 8 2.9890 0.9693 -4.6817 19 6 3.0736 -1.0545 -5.8468 20 6 2.1395 -1.8787 -6.4759 21 7 2.4917 -2.6349 -7.4945 22 6 3.7262 -2.6468 -7.9601 23 6 4.7115 -1.8580 -7.3914 24 17 6.3301 -1.8883 -8.0182 25 6 4.3905 -1.0400 -6.3207 26 6 1.5097 -2.1307 -3.7268 27 6 1.9210 -2.8144 -2.4178 28 8 1.4659 -2.0290 -1.3134 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2490 -1.6317 1.1527 33 1 3.2487 -2.3958 4.2420 34 1 0.5627 0.2647 -2.4777 35 1 2.1797 1.0132 -2.5281 36 1 1.1188 -1.8968 -6.1236 37 1 3.9720 -3.2820 -8.7981 38 1 5.1380 -0.4106 -5.8608 39 1 0.4249 -2.1573 -3.8298 40 1 1.9717 -2.6443 -4.5700 41 1 1.4720 -3.8065 -2.3685 42 1 3.0065 -2.9038 -2.3791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755461472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:24 Heat of formation + Delta-G solvation = -20.267192 kcal Electronic energy + Delta-G solvation = -27095.916532 eV Core-core repulsion = 23103.003965 eV Total energy + Delta-G solvation = -3992.912567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36242 -39.95868 -38.44652 -37.18478 -35.65294 -34.71760 -33.18416 -32.60445 -31.82367 -30.29842 -28.59674 -27.46932 -25.34113 -24.58521 -24.20713 -23.44860 -22.34580 -20.08823 -19.68377 -18.14637 -17.72017 -17.30712 -17.16642 -16.56470 -16.11663 -15.64508 -15.41184 -15.22538 -14.70606 -14.55038 -14.52730 -14.08760 -13.82603 -13.41854 -13.38173 -13.10081 -12.93691 -12.70122 -12.51952 -12.20079 -12.03636 -11.76882 -11.40041 -11.18829 -10.92032 -10.82042 -10.75023 -10.54544 -10.42049 -10.30496 -10.08158 -9.92198 -9.88584 -9.67284 -9.50337 -8.90884 -8.65736 -6.95582 -5.74945 -3.04000 0.07169 0.42911 1.40524 2.26655 2.52680 3.04849 3.44727 3.49238 3.50051 3.69652 3.88137 3.93134 4.07411 4.17446 4.53075 4.54975 4.63543 4.66603 4.76809 4.98019 5.06168 5.19520 5.25183 5.30268 5.35227 5.56728 5.58365 5.62914 5.71206 5.74169 5.89222 5.94582 6.09913 6.24468 6.42148 6.61361 6.78862 6.98350 7.12664 7.13587 7.39501 7.69790 7.72951 8.43153 9.55035 10.12001 10.48468 11.47367 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.002417 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.478224 B =11579.830197 C =12032.674144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.075 3.925 14 H 0.064 0.936 15 C 0.083 3.917 16 N -0.602 5.602 17 C 0.564 3.436 18 O -0.524 6.524 19 C -0.162 4.162 20 C 0.132 3.868 21 N -0.466 5.466 22 C 0.131 3.869 23 C -0.093 4.093 24 Cl -0.043 7.043 25 C -0.017 4.017 26 C 0.061 3.939 27 C 0.047 3.953 28 O -0.356 6.356 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.389 0.611 33 H 0.255 0.745 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.155 0.845 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 -2.977 -25.252 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.016 3.984 14 H 0.082 0.918 15 C -0.039 4.039 16 N -0.335 5.335 17 C 0.351 3.649 18 O -0.400 6.400 19 C -0.168 4.168 20 C -0.025 4.025 21 N -0.174 5.174 22 C -0.027 4.027 23 C -0.122 4.122 24 Cl -0.015 7.015 25 C -0.043 4.043 26 C -0.062 4.062 27 C -0.032 4.032 28 O -0.273 6.273 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.189 0.811 37 H 0.189 0.811 38 H 0.173 0.827 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.182 -2.828 -25.383 25.541 hybrid contribution 1.143 0.667 1.020 1.671 sum 0.961 -2.160 -24.363 24.478 Atomic orbital electron populations 1.22422 0.98600 1.01672 0.99601 1.20192 0.92873 0.94605 0.84885 0.92243 1.42343 1.77884 1.10953 1.04859 1.19196 1.36759 0.93844 0.87359 0.91206 1.24738 1.02122 0.95962 0.98026 1.69664 1.50665 1.08641 1.28938 0.86282 0.77780 0.78591 0.83600 1.21270 1.21732 1.21290 1.23007 0.97705 0.83059 0.94639 0.91760 1.22603 1.02405 0.95738 0.83169 1.48101 1.53671 1.13045 1.18703 1.17960 0.78222 0.86919 0.81807 1.90834 1.55007 1.15747 1.78453 1.20970 0.95252 1.00863 0.99684 1.23239 0.99959 0.89118 0.90231 1.67904 1.17820 1.20286 1.11430 1.23032 0.86948 0.94860 0.97817 1.21994 0.89056 1.02128 0.99026 1.98412 1.19378 1.97687 1.85979 1.21586 0.95784 0.94510 0.92463 1.22851 1.01059 0.81662 1.00608 1.22898 0.99637 0.95307 0.85324 1.88124 1.67409 1.25815 1.45992 0.92834 0.94655 0.92391 0.77672 0.93493 0.89576 0.87951 0.81106 0.81129 0.82743 0.89590 0.89009 0.87598 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.06 37.16 0.34 -2.55 16 2 C 0.19 3.58 2.77 -67.93 -0.19 3.39 16 3 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 4 N -0.72 -17.89 5.10 -53.43 -0.27 -18.16 16 5 C -0.24 -6.62 9.93 -15.06 -0.15 -6.76 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 9 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 C 0.08 1.22 2.61 -26.57 -0.07 1.15 16 14 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 15 C 0.08 1.12 5.81 -3.53 -0.02 1.10 16 16 N -0.60 -7.05 3.02 -173.39 -0.52 -7.58 16 17 C 0.56 7.02 7.30 -12.33 -0.09 6.93 16 18 O -0.52 -8.32 16.51 5.32 0.09 -8.23 16 19 C -0.16 -1.60 5.08 -104.83 -0.53 -2.13 16 20 C 0.13 1.09 8.56 -17.13 -0.15 0.94 16 21 N -0.47 -3.94 10.34 -12.88 -0.13 -4.07 16 22 C 0.13 0.95 10.97 -17.43 -0.19 0.76 16 23 C -0.09 -0.74 6.34 -39.41 -0.25 -0.99 16 24 Cl -0.04 -0.32 28.98 -51.86 -1.50 -1.82 16 25 C -0.02 -0.15 9.68 -38.84 -0.38 -0.53 16 26 C 0.06 0.56 5.42 -3.53 -0.02 0.54 16 27 C 0.05 0.53 6.98 37.31 0.26 0.79 16 28 O -0.36 -5.67 9.24 -35.23 -0.33 -5.99 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.03 0.51 6.42 -51.93 -0.33 0.18 16 31 H 0.06 1.08 7.56 -51.93 -0.39 0.69 16 32 H 0.39 10.47 7.59 -40.82 -0.31 10.16 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.09 1.09 6.27 -51.93 -0.33 0.76 16 35 H 0.10 1.46 7.11 -51.93 -0.37 1.09 16 36 H 0.17 1.08 6.87 -52.49 -0.36 0.72 16 37 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.67 4.66 -51.92 -0.24 0.43 16 41 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -32.84 360.68 -8.32 -41.17 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.26 Total: 7.12 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.53 Total: 2.20 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.20 Total: -57.19 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.24 Total: -14.22 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.50 Total: -1.82 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.84 -8.32 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755461472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.899 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds