Wall clock time and date at job start Tue Mar 31 2020 22:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47084 * 112.35040 * 3 2 1 5 5 N 1.46503 * 109.47009 * 172.59153 * 4 3 2 6 6 C 1.46498 * 120.00081 * 265.67824 * 5 4 3 7 7 C 1.50706 * 109.47397 * 270.00290 * 6 5 4 8 8 H 1.08003 * 119.99568 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00249 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99638 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99895 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47097 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46791 * 119.99751 * 11 9 7 14 14 H 1.48494 * 109.47292 * 239.99871 * 11 9 7 15 15 C 1.34777 * 119.99926 * 85.67976 * 5 4 3 16 16 O 1.21522 * 119.99877 * 178.87087 * 15 5 4 17 17 C 1.48145 * 120.00123 * 358.87272 * 15 5 4 18 18 C 1.39167 * 119.68956 * 188.71081 * 17 15 5 19 19 C 1.38746 * 119.18541 * 179.97438 * 18 17 15 20 20 C 1.38370 * 118.56049 * 0.02562 * 19 18 17 21 21 C 1.39256 * 119.30546 * 359.97438 * 20 19 18 22 22 O 1.35662 * 119.61732 * 180.02562 * 21 20 19 23 23 C 1.42893 * 117.00398 * 175.64729 * 22 21 20 24 24 C 1.53000 * 109.47724 * 174.86458 * 23 22 21 25 25 F 1.39901 * 109.47008 * 300.00408 * 24 23 22 26 26 F 1.39902 * 109.46718 * 59.99735 * 24 23 22 27 27 N 1.31926 * 120.76706 * 0.26856 * 21 20 19 28 28 H 1.09004 * 109.47195 * 352.35511 * 3 2 1 29 29 H 1.08997 * 109.47303 * 232.35411 * 3 2 1 30 30 H 1.09002 * 109.47237 * 52.59263 * 4 3 2 31 31 H 1.09003 * 109.47396 * 292.59161 * 4 3 2 32 32 H 1.09003 * 109.47319 * 30.00121 * 6 5 4 33 33 H 1.09003 * 109.47558 * 149.99897 * 6 5 4 34 34 H 0.96999 * 119.99307 * 180.02562 * 10 9 7 35 35 H 1.07993 * 120.40637 * 0.02645 * 18 17 15 36 36 H 1.07997 * 120.71846 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.34872 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47147 * 294.87179 * 23 22 21 39 39 H 1.09002 * 109.47299 * 54.86291 * 23 22 21 40 40 H 1.08989 * 109.47493 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5494 -1.3341 5 7 4.5718 0.7162 -1.2699 6 6 5.1448 2.0131 -0.9010 7 6 5.3578 2.8399 -2.1428 8 1 5.0932 2.4391 -3.1102 9 6 5.8904 4.1078 -2.0440 10 7 6.2121 4.5958 -0.8659 11 14 6.1550 5.1322 -3.5835 12 1 5.7146 4.3605 -4.7733 13 1 5.3640 6.3853 -3.4862 14 1 7.5961 5.4655 -3.7146 15 6 5.3824 -0.3234 -1.5503 16 8 6.5887 -0.1795 -1.5171 17 6 4.8030 -1.6414 -1.8991 18 6 5.6339 -2.7524 -2.0092 19 6 5.0801 -3.9818 -2.3358 20 6 3.7139 -4.0582 -2.5418 21 6 2.9402 -2.9073 -2.4157 22 8 1.6001 -2.9750 -2.6158 23 6 0.8477 -1.7835 -2.3790 24 6 -0.6116 -2.0142 -2.7768 25 9 -0.6780 -2.3456 -4.1343 26 9 -1.1428 -3.0604 -2.0148 27 7 3.4959 -1.7508 -2.1086 28 1 2.9718 -1.0177 0.1367 29 1 2.9711 0.6285 0.8137 30 1 2.6499 1.5136 -1.5330 31 1 2.8670 -0.1479 -2.1335 32 1 4.4619 2.5344 -0.2301 33 1 6.0999 1.8588 -0.3989 34 1 6.5864 5.4880 -0.7964 35 1 6.6967 -2.6588 -1.8415 36 1 5.7019 -4.8600 -2.4281 37 1 3.2524 -5.0007 -2.7970 38 1 0.8996 -1.5253 -1.3213 39 1 1.2616 -0.9684 -2.9726 40 1 -1.1855 -1.1055 -2.5957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089811800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:03 Heat of formation + Delta-G solvation = -79.963267 kcal Electronic energy + Delta-G solvation = -30004.715277 eV Core-core repulsion = 25457.417414 eV Total energy + Delta-G solvation = -4547.297863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.16739 -47.18848 -41.15124 -39.18999 -37.96291 -37.02129 -35.45119 -33.19864 -32.48753 -31.54451 -30.89156 -29.78660 -27.51957 -25.11092 -24.03733 -23.92941 -22.66580 -22.53195 -19.95459 -18.62252 -17.79611 -17.73873 -17.37759 -17.16254 -16.76253 -16.51758 -16.23096 -16.14276 -15.59854 -15.27267 -14.88046 -14.56029 -14.30765 -14.18532 -13.98837 -13.73003 -13.56401 -13.52943 -13.37589 -13.02687 -12.68466 -12.57514 -12.40352 -12.27330 -12.13996 -11.77758 -11.45142 -11.36475 -11.19865 -11.04610 -10.97519 -10.69446 -10.24900 -10.13667 -9.91809 -9.65776 -8.98288 -8.74404 -8.51254 -7.88201 -6.12862 -4.17560 0.61399 1.05970 2.44870 2.59380 2.64404 3.01301 3.25954 3.34159 3.36862 3.45746 3.47942 3.73253 3.88686 3.96351 4.12540 4.23364 4.38958 4.52121 4.77078 4.78661 4.85308 4.97158 5.06493 5.15228 5.18583 5.22541 5.26169 5.31980 5.57725 5.77899 5.94202 5.97928 6.10944 6.34652 6.78406 6.95881 7.26541 7.34112 7.41188 7.47400 7.83209 8.11066 8.15020 8.68453 8.89140 9.48082 10.95333 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.003936 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.925438 B = 7112.704890 C = 8205.990353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.223 3.777 3 C -0.049 4.049 4 C 0.091 3.909 5 N -0.571 5.571 6 C 0.242 3.758 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.556 3.444 16 O -0.520 6.520 17 C 0.134 3.866 18 C -0.148 4.148 19 C -0.043 4.043 20 C -0.171 4.171 21 C 0.312 3.688 22 O -0.292 6.292 23 C 0.004 3.996 24 C 0.273 3.727 25 F -0.198 7.198 26 F -0.197 7.197 27 N -0.513 5.513 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.264 0.736 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.448 -16.342 -0.878 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.094 4.094 3 C -0.091 4.091 4 C -0.035 4.035 5 N -0.300 5.300 6 C 0.123 3.877 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.208 1.208 15 C 0.340 3.660 16 O -0.395 6.395 17 C -0.003 4.003 18 C -0.169 4.169 19 C -0.069 4.069 20 C -0.191 4.191 21 C 0.132 3.868 22 O -0.199 6.199 23 C -0.073 4.073 24 C 0.219 3.781 25 F -0.179 7.179 26 F -0.178 7.178 27 N -0.240 5.240 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.146 0.854 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.171 0.829 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.101 -15.546 -0.771 18.555 hybrid contribution 0.959 0.146 -0.792 1.252 sum -9.142 -15.400 -1.563 17.977 Atomic orbital electron populations 1.81231 1.12689 1.09405 1.09232 1.29141 0.95301 0.92409 0.92539 1.19920 0.81216 1.04905 1.03016 1.22255 0.81767 1.03331 0.96186 1.48070 1.05036 1.12145 1.64767 1.19478 0.95215 0.76574 0.96406 1.21427 1.42489 0.99391 0.93378 0.92222 1.24910 0.95104 0.97634 0.96268 1.69930 1.43026 1.17410 1.22809 0.86448 0.78004 0.79927 0.83098 1.19772 1.20959 1.20830 1.17772 0.86436 0.82557 0.79191 1.90801 1.13562 1.82975 1.52169 1.21345 0.87432 0.95644 0.95857 1.22033 1.02385 0.91801 1.00716 1.21455 0.93653 0.98045 0.93711 1.21212 0.93739 0.98098 1.06078 1.19934 0.83949 0.90176 0.92703 1.86285 1.14886 1.35367 1.83386 1.24320 0.89438 0.88704 1.04792 1.22047 0.93565 0.89194 0.73314 1.93018 1.97252 1.94088 1.33585 1.93013 1.87779 1.61612 1.75441 1.67662 1.13810 1.23935 1.18613 0.88092 0.86888 0.89765 0.85409 0.94416 0.93382 0.92674 0.82939 0.83357 0.83792 0.88449 0.87879 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.86 17.85 42.15 0.75 -5.11 16 2 C 0.22 2.64 12.35 -20.76 -0.26 2.38 16 3 C -0.05 -0.57 5.55 -29.52 -0.16 -0.73 16 4 C 0.09 1.31 4.93 -4.04 -0.02 1.29 16 5 N -0.57 -10.69 2.46 -176.05 -0.43 -11.12 16 6 C 0.24 5.67 5.13 -5.19 -0.03 5.64 16 7 C -0.53 -13.95 9.39 -34.44 -0.32 -14.28 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 11 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.56 10.40 7.63 -12.19 -0.09 10.31 16 16 O -0.52 -11.62 15.94 5.35 0.09 -11.54 16 17 C 0.13 1.93 6.44 -83.02 -0.53 1.40 16 18 C -0.15 -1.76 9.62 -39.05 -0.38 -2.14 16 19 C -0.04 -0.38 10.16 -39.35 -0.40 -0.78 16 20 C -0.17 -1.65 10.05 -39.15 -0.39 -2.04 16 21 C 0.31 3.72 7.49 -17.13 -0.13 3.59 16 22 O -0.29 -3.55 10.00 -18.69 -0.19 -3.74 16 23 C 0.00 0.05 5.04 37.16 0.19 0.23 16 24 C 0.27 2.87 5.63 37.16 0.21 3.08 16 25 F -0.20 -2.37 17.28 2.25 0.04 -2.33 16 26 F -0.20 -2.42 17.28 2.25 0.04 -2.39 16 27 N -0.51 -6.67 3.88 -9.87 -0.04 -6.71 16 28 H 0.10 1.10 7.07 -51.93 -0.37 0.73 16 29 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.26 8.02 -51.93 -0.42 0.84 16 31 H 0.13 1.76 3.12 -65.05 -0.20 1.56 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.05 1.27 7.44 -51.93 -0.39 0.88 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.15 1.78 7.66 -52.49 -0.40 1.38 16 36 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.10 1.09 3.73 -51.93 -0.19 0.89 16 39 H 0.10 1.09 6.79 -51.93 -0.35 0.73 16 40 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -31.75 354.11 -5.08 -36.83 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -3.98 Total: -0.41 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -2.42 Total: 9.56 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 1.02 Total: -47.32 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.10 Total: -15.28 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.08 Total: -4.72 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.75 -5.08 -36.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089811800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.132 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds