Wall clock time and date at job start Tue Mar 31 2020 22:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47084 * 112.35040 * 3 2 1 5 5 N 1.46503 * 109.47009 * 172.59153 * 4 3 2 6 6 C 1.46498 * 120.00081 * 265.67824 * 5 4 3 7 7 C 1.50706 * 109.47397 * 270.00290 * 6 5 4 8 8 H 1.08003 * 119.99568 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00249 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99638 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99895 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47097 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46791 * 119.99751 * 11 9 7 14 14 H 1.48494 * 109.47292 * 239.99871 * 11 9 7 15 15 C 1.34777 * 119.99926 * 85.67976 * 5 4 3 16 16 O 1.21522 * 119.99877 * 178.87087 * 15 5 4 17 17 C 1.48145 * 120.00123 * 358.87272 * 15 5 4 18 18 C 1.39167 * 119.68956 * 188.71081 * 17 15 5 19 19 C 1.38746 * 119.18541 * 179.97438 * 18 17 15 20 20 C 1.38370 * 118.56049 * 0.02562 * 19 18 17 21 21 C 1.39256 * 119.30546 * 359.97438 * 20 19 18 22 22 O 1.35662 * 119.61732 * 180.02562 * 21 20 19 23 23 C 1.42893 * 117.00398 * 175.64729 * 22 21 20 24 24 C 1.53000 * 109.47724 * 174.86458 * 23 22 21 25 25 F 1.39901 * 109.47008 * 300.00408 * 24 23 22 26 26 F 1.39902 * 109.46718 * 59.99735 * 24 23 22 27 27 N 1.31926 * 120.76706 * 0.26856 * 21 20 19 28 28 H 1.09004 * 109.47195 * 352.35511 * 3 2 1 29 29 H 1.08997 * 109.47303 * 232.35411 * 3 2 1 30 30 H 1.09002 * 109.47237 * 52.59263 * 4 3 2 31 31 H 1.09003 * 109.47396 * 292.59161 * 4 3 2 32 32 H 1.09003 * 109.47319 * 30.00121 * 6 5 4 33 33 H 1.09003 * 109.47558 * 149.99897 * 6 5 4 34 34 H 0.96999 * 119.99307 * 180.02562 * 10 9 7 35 35 H 1.07993 * 120.40637 * 0.02645 * 18 17 15 36 36 H 1.07997 * 120.71846 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.34872 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47147 * 294.87179 * 23 22 21 39 39 H 1.09002 * 109.47299 * 54.86291 * 23 22 21 40 40 H 1.08989 * 109.47493 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5494 -1.3341 5 7 4.5718 0.7162 -1.2699 6 6 5.1448 2.0131 -0.9010 7 6 5.3578 2.8399 -2.1428 8 1 5.0932 2.4391 -3.1102 9 6 5.8904 4.1078 -2.0440 10 7 6.2121 4.5958 -0.8659 11 14 6.1550 5.1322 -3.5835 12 1 5.7146 4.3605 -4.7733 13 1 5.3640 6.3853 -3.4862 14 1 7.5961 5.4655 -3.7146 15 6 5.3824 -0.3234 -1.5503 16 8 6.5887 -0.1795 -1.5171 17 6 4.8030 -1.6414 -1.8991 18 6 5.6339 -2.7524 -2.0092 19 6 5.0801 -3.9818 -2.3358 20 6 3.7139 -4.0582 -2.5418 21 6 2.9402 -2.9073 -2.4157 22 8 1.6001 -2.9750 -2.6158 23 6 0.8477 -1.7835 -2.3790 24 6 -0.6116 -2.0142 -2.7768 25 9 -0.6780 -2.3456 -4.1343 26 9 -1.1428 -3.0604 -2.0148 27 7 3.4959 -1.7508 -2.1086 28 1 2.9718 -1.0177 0.1367 29 1 2.9711 0.6285 0.8137 30 1 2.6499 1.5136 -1.5330 31 1 2.8670 -0.1479 -2.1335 32 1 4.4619 2.5344 -0.2301 33 1 6.0999 1.8588 -0.3989 34 1 6.5864 5.4880 -0.7964 35 1 6.6967 -2.6588 -1.8415 36 1 5.7019 -4.8600 -2.4281 37 1 3.2524 -5.0007 -2.7970 38 1 0.8996 -1.5253 -1.3213 39 1 1.2616 -0.9684 -2.9726 40 1 -1.1855 -1.1055 -2.5957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089811800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:02 Heat of formation + Delta-G solvation = -99.247930 kcal Electronic energy + Delta-G solvation = -30005.551523 eV Core-core repulsion = 25457.417414 eV Total energy + Delta-G solvation = -4548.134109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.05123 -48.08355 -42.16186 -40.47020 -38.96598 -38.13839 -36.86208 -34.95799 -33.61826 -32.50741 -32.17174 -30.75423 -29.25360 -26.31523 -25.44002 -24.96379 -23.94166 -23.52829 -21.18545 -19.63173 -18.94475 -18.67882 -18.45738 -18.42207 -18.12155 -17.77434 -17.12207 -17.07512 -17.00695 -16.39636 -16.20318 -16.01294 -15.71207 -15.17384 -14.97240 -14.75247 -14.63984 -14.44839 -14.42791 -14.37089 -14.05885 -13.77911 -13.48781 -13.44121 -13.22722 -13.08812 -12.98178 -12.76043 -12.57047 -12.33629 -12.22319 -12.10431 -12.01228 -11.69050 -11.25422 -10.96983 -10.60095 -10.18086 -9.73686 -9.42766 -8.19350 -6.31765 -0.36271 0.21077 1.39451 1.41858 1.52407 1.54999 1.60688 1.65719 1.81945 2.14081 2.42358 2.62177 2.68735 2.85945 3.10736 3.11339 3.12810 3.34086 3.70214 3.75037 3.95084 4.00959 4.10798 4.14398 4.15200 4.21590 4.30924 4.48205 4.57957 4.78011 4.92022 5.06053 5.13657 5.21523 5.29666 5.33186 5.58823 5.81744 6.00045 6.09453 6.40952 6.46079 6.67401 6.76742 7.23255 7.41085 8.87802 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.003936 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.925438 B = 7112.704890 C = 8205.990353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.238 3.762 3 C -0.037 4.037 4 C 0.091 3.909 5 N -0.576 5.576 6 C 0.257 3.743 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.014 3.986 10 N -0.924 5.924 11 Si 0.959 3.041 12 H -0.270 1.270 13 H -0.273 1.273 14 H -0.282 1.282 15 C 0.553 3.447 16 O -0.569 6.569 17 C 0.110 3.890 18 C -0.144 4.144 19 C -0.024 4.024 20 C -0.153 4.153 21 C 0.299 3.701 22 O -0.298 6.298 23 C 0.002 3.998 24 C 0.271 3.729 25 F -0.207 7.207 26 F -0.207 7.207 27 N -0.519 5.519 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.036 0.964 33 H 0.011 0.989 34 H 0.266 0.734 35 H 0.151 0.849 36 H 0.194 0.806 37 H 0.174 0.826 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 -18.389 -1.861 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.078 4.078 3 C -0.078 4.078 4 C -0.033 4.033 5 N -0.304 5.304 6 C 0.136 3.864 7 C -0.579 4.579 8 H 0.069 0.931 9 C -0.185 4.185 10 N -0.564 5.564 11 Si 0.784 3.216 12 H -0.194 1.194 13 H -0.198 1.198 14 H -0.208 1.208 15 C 0.340 3.660 16 O -0.448 6.448 17 C -0.025 4.025 18 C -0.166 4.166 19 C -0.049 4.049 20 C -0.174 4.174 21 C 0.119 3.881 22 O -0.206 6.206 23 C -0.074 4.074 24 C 0.218 3.782 25 F -0.188 7.188 26 F -0.189 7.189 27 N -0.246 5.246 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.094 0.906 31 H 0.157 0.843 32 H 0.054 0.946 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.168 0.832 36 H 0.211 0.789 37 H 0.192 0.808 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.103 -17.610 -1.754 20.891 hybrid contribution 1.234 0.663 -0.494 1.485 sum -9.869 -16.947 -2.248 19.739 Atomic orbital electron populations 1.81249 1.13039 1.10018 1.09641 1.28942 0.94958 0.91854 0.92066 1.19737 0.81075 1.05522 1.01459 1.22407 0.79160 1.03459 0.98299 1.47964 1.06833 1.10763 1.64819 1.18951 0.93712 0.78603 0.95092 1.21703 1.42282 0.99972 0.93911 0.93054 1.25701 0.94893 0.98856 0.99073 1.70027 1.43818 1.17888 1.24630 0.85491 0.77827 0.78605 0.79631 1.19440 1.19811 1.20792 1.18386 0.85883 0.83935 0.77833 1.90755 1.15644 1.84177 1.54273 1.20628 0.88424 0.93959 0.99481 1.22170 1.02138 0.92282 1.00004 1.21881 0.93697 0.97948 0.91384 1.21658 0.93802 0.98361 1.03530 1.20217 0.84074 0.90527 0.93312 1.86293 1.14991 1.35710 1.83562 1.24365 0.89696 0.88647 1.04724 1.22328 0.93603 0.89668 0.72628 1.92999 1.97281 1.94215 1.34311 1.92990 1.87901 1.62284 1.75692 1.67333 1.13130 1.25121 1.19031 0.86875 0.86422 0.90553 0.84259 0.94643 0.97114 0.92457 0.83174 0.78928 0.80826 0.88606 0.87666 0.82585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.46 17.85 20.01 0.36 -11.10 16 2 C 0.24 5.38 12.35 89.44 1.11 6.48 16 3 C -0.04 -0.83 5.55 28.79 0.16 -0.67 16 4 C 0.09 2.65 4.93 86.38 0.43 3.08 16 5 N -0.58 -22.32 2.46 -829.20 -2.04 -24.36 16 6 C 0.26 12.64 5.13 85.64 0.44 13.08 16 7 C -0.54 -29.42 9.39 25.60 0.24 -29.18 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.01 0.78 5.46 84.65 0.46 1.24 16 10 N -0.92 -53.20 13.29 21.45 0.28 -52.91 16 11 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 15 C 0.55 21.36 7.63 86.88 0.66 22.03 16 16 O -0.57 -26.77 15.94 -3.79 -0.06 -26.83 16 17 C 0.11 3.12 6.44 41.85 0.27 3.39 16 18 C -0.14 -3.18 9.62 22.61 0.22 -2.96 16 19 C -0.02 -0.33 10.16 22.42 0.23 -0.10 16 20 C -0.15 -2.33 10.05 22.55 0.23 -2.10 16 21 C 0.30 6.36 7.49 84.92 0.64 7.00 16 22 O -0.30 -6.56 10.00 -89.78 -0.90 -7.46 16 23 C 0.00 0.05 5.04 71.98 0.36 0.41 16 24 C 0.27 5.25 5.63 71.98 0.41 5.65 16 25 F -0.21 -4.63 17.28 44.97 0.78 -3.85 16 26 F -0.21 -4.76 17.28 44.97 0.78 -3.98 16 27 N -0.52 -12.81 3.88 -298.19 -1.16 -13.96 16 28 H 0.11 2.35 7.07 -2.38 -0.02 2.33 16 29 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.08 2.32 8.02 -2.39 -0.02 2.30 16 31 H 0.14 3.79 3.12 -28.30 -0.09 3.70 16 32 H 0.04 1.73 8.07 -2.39 -0.02 1.71 16 33 H 0.01 0.61 7.44 -2.39 -0.02 0.59 16 34 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.15 3.38 7.66 -2.91 -0.02 3.36 16 36 H 0.19 0.97 8.06 -2.91 -0.02 0.94 16 37 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.10 1.98 3.73 -2.38 -0.01 1.97 16 39 H 0.11 2.08 6.79 -2.39 -0.02 2.07 16 40 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -71.06 354.11 6.94 -64.12 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.03 Total: 7.44 kcal Atomic # 6 Polarization: 21.50 SS G_CDS: 5.84 Total: 27.34 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -2.56 Total: -102.34 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.96 Total: -34.30 kcal Atomic # 9 Polarization: -9.39 SS G_CDS: 1.55 Total: -7.83 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -71.06 6.94 -64.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089811800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.125 kcal (2) G-P(sol) polarization free energy of solvation -71.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds