Wall clock time and date at job start Tue Mar 31 2020 22:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46889 * 14.74603 * 3 2 1 5 5 N 1.46500 * 109.47092 * 185.40068 * 4 3 2 6 6 C 1.46502 * 120.00304 * 278.05052 * 5 4 3 7 7 C 1.50697 * 109.46706 * 269.99662 * 6 5 4 8 8 H 1.07993 * 120.00502 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99638 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00104 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99836 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47167 * 90.00168 * 11 9 7 13 13 H 1.48504 * 109.47118 * 209.99898 * 11 9 7 14 14 H 1.48500 * 109.47238 * 330.00133 * 11 9 7 15 15 C 1.34776 * 119.99747 * 98.04558 * 5 4 3 16 16 O 1.21586 * 120.00203 * 185.84868 * 15 5 4 17 17 C 1.47620 * 120.00267 * 5.84848 * 15 5 4 18 18 C 1.40275 * 120.49753 * 134.70384 * 17 15 5 19 19 C 1.37965 * 118.35572 * 180.02562 * 18 17 15 20 20 C 1.39169 * 119.25849 * 359.97438 * 19 18 17 21 21 O 1.35499 * 119.52012 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99896 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47063 * 180.02562 * 22 21 20 24 24 F 1.39902 * 109.46891 * 299.99482 * 23 22 21 25 25 F 1.39899 * 109.47357 * 59.99707 * 23 22 21 26 26 N 1.32402 * 120.95076 * 0.02562 * 20 19 18 27 27 C 1.31661 * 121.80106 * 0.02562 * 26 20 19 28 28 H 1.08999 * 109.47217 * 254.74728 * 3 2 1 29 29 H 1.08994 * 109.46766 * 134.74469 * 3 2 1 30 30 H 1.09002 * 109.47351 * 65.40297 * 4 3 2 31 31 H 1.09000 * 109.47238 * 305.40320 * 4 3 2 32 32 H 1.09007 * 109.46843 * 29.99583 * 6 5 4 33 33 H 1.08998 * 109.47109 * 149.99701 * 6 5 4 34 34 H 0.96995 * 119.99720 * 179.97438 * 10 9 7 35 35 H 1.07996 * 120.82679 * 0.02562 * 18 17 15 36 36 H 1.07995 * 120.36996 * 180.02562 * 19 18 17 37 37 H 1.09005 * 109.46580 * 299.99658 * 22 21 20 38 38 H 1.08996 * 109.47219 * 59.99695 * 22 21 20 39 39 H 1.08997 * 109.46654 * 179.97438 * 23 22 21 40 40 H 1.08005 * 119.68316 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3941 -0.3672 5 7 4.5779 -1.4286 -0.2420 6 6 5.4185 -0.9190 -1.3282 7 6 5.7270 -2.0365 -2.2911 8 1 5.3356 -3.0270 -2.1122 9 6 6.5080 -1.7940 -3.4012 10 7 6.9842 -0.5876 -3.6194 11 14 6.8897 -3.1789 -4.5952 12 1 5.8443 -3.2265 -5.6486 13 1 8.2143 -2.9404 -5.2228 14 1 6.9142 -4.4708 -3.8633 15 6 5.1469 -1.9290 0.8726 16 8 6.3515 -1.8611 1.0232 17 6 4.3077 -2.5596 1.9105 18 6 4.6881 -3.7794 2.4894 19 6 3.8706 -4.3296 3.4551 20 6 2.7055 -3.6621 3.8207 21 8 1.8990 -4.1974 4.7689 22 6 0.7166 -3.4674 5.1024 23 6 -0.0605 -4.2216 6.1833 24 9 -0.4138 -5.4882 5.7056 25 9 0.7395 -4.3592 7.3227 26 7 2.3737 -2.5117 3.2555 27 6 3.1239 -1.9518 2.3296 28 1 2.9713 0.2712 0.9914 29 1 2.9710 0.7242 -0.7299 30 1 2.8365 -1.6256 -1.3943 31 1 2.6787 -2.1307 0.3052 32 1 4.8909 -0.1224 -1.8529 33 1 6.3485 -0.5282 -0.9152 34 1 7.5340 -0.4172 -4.4001 35 1 5.5984 -4.2756 2.1868 36 1 4.1324 -5.2672 3.9226 37 1 0.9919 -2.4807 5.4750 38 1 0.0935 -3.3597 4.2146 39 1 -0.9621 -3.6645 6.4380 40 1 2.8207 -1.0123 1.8916 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090394769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:54 Heat of formation + Delta-G solvation = -97.109717 kcal Electronic energy + Delta-G solvation = -28630.855940 eV Core-core repulsion = 24082.814551 eV Total energy + Delta-G solvation = -4548.041389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.31562 -47.34486 -41.07135 -39.48166 -37.81338 -37.01263 -35.42973 -33.05715 -32.70523 -31.64520 -31.03147 -30.01415 -27.38214 -24.65693 -24.45640 -24.00081 -23.02459 -22.32303 -19.26609 -19.19958 -17.93194 -17.90134 -17.79223 -17.37499 -16.84350 -16.56338 -16.37993 -16.16839 -15.58351 -15.31099 -14.61911 -14.47938 -14.23141 -14.08824 -14.04660 -13.83832 -13.70304 -13.52634 -13.36437 -13.02457 -12.91434 -12.70767 -12.55416 -12.32887 -12.08896 -11.84337 -11.60075 -11.47274 -11.33554 -11.04733 -10.98240 -10.69568 -10.30138 -10.09051 -10.04211 -9.79804 -9.25448 -8.66329 -8.53344 -7.98429 -6.15761 -4.20988 0.74603 1.03793 2.39206 2.64909 2.74481 3.07940 3.24505 3.32155 3.33135 3.34597 3.45452 3.67533 3.71245 3.91280 4.05626 4.10255 4.35730 4.40448 4.64737 4.69123 4.86506 4.90175 4.96141 4.97062 5.02411 5.06967 5.19437 5.25830 5.47308 5.64583 5.71550 5.96413 6.01815 6.12472 6.79066 6.84190 7.23910 7.31909 7.50212 7.51037 7.79913 8.07322 8.09363 8.67039 8.85720 9.45003 10.92341 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.002740 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.701259 B =10215.524050 C =11130.727966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.213 3.787 3 C -0.057 4.057 4 C 0.106 3.894 5 N -0.588 5.588 6 C 0.244 3.756 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.559 3.441 16 O -0.523 6.523 17 C -0.202 4.202 18 C 0.008 3.992 19 C -0.187 4.187 20 C 0.327 3.673 21 O -0.294 6.294 22 C 0.018 3.982 23 C 0.271 3.729 24 F -0.199 7.199 25 F -0.199 7.199 26 N -0.542 5.542 27 C 0.154 3.846 28 H 0.110 0.890 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.265 0.735 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.132 0.868 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.527 -2.978 16.242 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.105 4.105 3 C -0.098 4.098 4 C -0.020 4.020 5 N -0.318 5.318 6 C 0.125 3.875 7 C -0.572 4.572 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.345 3.655 16 O -0.399 6.399 17 C -0.208 4.208 18 C -0.017 4.017 19 C -0.207 4.207 20 C 0.149 3.851 21 O -0.201 6.201 22 C -0.059 4.059 23 C 0.217 3.783 24 F -0.180 7.180 25 F -0.180 7.180 26 N -0.266 5.266 27 C -0.003 4.003 28 H 0.127 0.873 29 H 0.144 0.856 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.171 0.829 36 H 0.166 0.834 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.149 0.851 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -14.177 -2.701 16.607 22.002 hybrid contribution 1.254 -1.009 -1.038 1.916 sum -12.923 -3.711 15.569 20.571 Atomic orbital electron populations 1.81210 1.12867 1.08372 1.08885 1.28980 0.94993 0.93368 0.93169 1.20012 0.81695 1.02368 1.05712 1.21550 0.82374 0.93602 1.04475 1.48142 1.05385 1.60358 1.17958 1.19434 0.90598 0.94735 0.82702 1.21402 1.32302 0.96199 1.07269 0.92273 1.24910 0.95349 0.95782 0.97818 1.69913 1.34495 1.20179 1.28449 0.86506 0.77788 0.82302 0.80909 1.20606 1.21060 1.19848 1.17824 0.87280 0.79077 0.81357 1.90803 1.14166 1.57051 1.77906 1.21119 0.98345 0.98810 1.02498 1.21508 0.97617 0.92248 0.90352 1.21002 0.94338 1.03335 1.02028 1.19906 0.88698 0.89009 0.87500 1.86245 1.33504 1.47381 1.52952 1.23842 0.86647 0.96351 0.99063 1.22135 0.92927 0.81972 0.81277 1.93029 1.92613 1.43905 1.88442 1.93026 1.76275 1.96269 1.52457 1.67279 1.34883 1.11186 1.13216 1.23109 0.88468 0.98606 0.90078 0.87278 0.85636 0.88400 0.90219 0.94346 0.93110 0.92563 0.82907 0.83410 0.88280 0.88268 0.85058 0.81307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.14 18.54 42.16 0.78 -5.36 16 2 C 0.21 2.47 15.37 -20.76 -0.32 2.15 16 3 C -0.06 -0.57 5.10 -29.52 -0.15 -0.72 16 4 C 0.11 1.39 4.83 -4.04 -0.02 1.37 16 5 N -0.59 -10.35 2.46 -176.25 -0.43 -10.79 16 6 C 0.24 5.49 5.22 -5.19 -0.03 5.46 16 7 C -0.53 -13.67 9.39 -34.44 -0.32 -13.99 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -24.64 13.29 55.43 0.74 -23.90 16 11 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 15 C 0.56 10.16 7.29 -12.43 -0.09 10.07 16 16 O -0.52 -11.75 16.55 5.29 0.09 -11.67 16 17 C -0.20 -2.90 5.11 -104.82 -0.54 -3.44 16 18 C 0.01 0.11 9.84 -38.92 -0.38 -0.27 16 19 C -0.19 -2.16 10.02 -39.34 -0.39 -2.56 16 20 C 0.33 4.00 7.49 -16.96 -0.13 3.87 16 21 O -0.29 -3.35 9.99 -18.19 -0.18 -3.53 16 22 C 0.02 0.14 5.52 37.16 0.21 0.35 16 23 C 0.27 1.87 5.63 37.16 0.21 2.08 16 24 F -0.20 -1.91 17.28 2.25 0.04 -1.87 16 25 F -0.20 -1.87 17.28 2.25 0.04 -1.84 16 26 N -0.54 -6.65 9.18 -12.97 -0.12 -6.77 16 27 C 0.15 1.90 8.58 -17.15 -0.15 1.75 16 28 H 0.11 0.91 6.20 -51.93 -0.32 0.59 16 29 H 0.13 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 31 H 0.08 0.96 5.03 -51.93 -0.26 0.70 16 32 H 0.04 0.84 8.00 -51.93 -0.42 0.43 16 33 H 0.05 1.31 7.35 -51.93 -0.38 0.93 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.17 1.78 3.63 -52.48 -0.19 1.59 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -33.41 363.26 -4.86 -38.28 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.07 Total: -1.31 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -2.20 Total: 7.71 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.96 Total: -46.82 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.09 Total: -15.20 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.08 Total: -3.71 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.41 -4.86 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090394769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.835 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds