Wall clock time and date at job start Tue Mar 31 2020 22:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46889 * 14.74603 * 3 2 1 5 5 N 1.46500 * 109.47092 * 185.40068 * 4 3 2 6 6 C 1.46502 * 120.00304 * 278.05052 * 5 4 3 7 7 C 1.50697 * 109.46706 * 269.99662 * 6 5 4 8 8 H 1.07993 * 120.00502 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99638 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00104 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99836 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47167 * 90.00168 * 11 9 7 13 13 H 1.48504 * 109.47118 * 209.99898 * 11 9 7 14 14 H 1.48500 * 109.47238 * 330.00133 * 11 9 7 15 15 C 1.34776 * 119.99747 * 98.04558 * 5 4 3 16 16 O 1.21586 * 120.00203 * 185.84868 * 15 5 4 17 17 C 1.47620 * 120.00267 * 5.84848 * 15 5 4 18 18 C 1.40275 * 120.49753 * 134.70384 * 17 15 5 19 19 C 1.37965 * 118.35572 * 180.02562 * 18 17 15 20 20 C 1.39169 * 119.25849 * 359.97438 * 19 18 17 21 21 O 1.35499 * 119.52012 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99896 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47063 * 180.02562 * 22 21 20 24 24 F 1.39902 * 109.46891 * 299.99482 * 23 22 21 25 25 F 1.39899 * 109.47357 * 59.99707 * 23 22 21 26 26 N 1.32402 * 120.95076 * 0.02562 * 20 19 18 27 27 C 1.31661 * 121.80106 * 0.02562 * 26 20 19 28 28 H 1.08999 * 109.47217 * 254.74728 * 3 2 1 29 29 H 1.08994 * 109.46766 * 134.74469 * 3 2 1 30 30 H 1.09002 * 109.47351 * 65.40297 * 4 3 2 31 31 H 1.09000 * 109.47238 * 305.40320 * 4 3 2 32 32 H 1.09007 * 109.46843 * 29.99583 * 6 5 4 33 33 H 1.08998 * 109.47109 * 149.99701 * 6 5 4 34 34 H 0.96995 * 119.99720 * 179.97438 * 10 9 7 35 35 H 1.07996 * 120.82679 * 0.02562 * 18 17 15 36 36 H 1.07995 * 120.36996 * 180.02562 * 19 18 17 37 37 H 1.09005 * 109.46580 * 299.99658 * 22 21 20 38 38 H 1.08996 * 109.47219 * 59.99695 * 22 21 20 39 39 H 1.08997 * 109.46654 * 179.97438 * 23 22 21 40 40 H 1.08005 * 119.68316 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3941 -0.3672 5 7 4.5779 -1.4286 -0.2420 6 6 5.4185 -0.9190 -1.3282 7 6 5.7270 -2.0365 -2.2911 8 1 5.3356 -3.0270 -2.1122 9 6 6.5080 -1.7940 -3.4012 10 7 6.9842 -0.5876 -3.6194 11 14 6.8897 -3.1789 -4.5952 12 1 5.8443 -3.2265 -5.6486 13 1 8.2143 -2.9404 -5.2228 14 1 6.9142 -4.4708 -3.8633 15 6 5.1469 -1.9290 0.8726 16 8 6.3515 -1.8611 1.0232 17 6 4.3077 -2.5596 1.9105 18 6 4.6881 -3.7794 2.4894 19 6 3.8706 -4.3296 3.4551 20 6 2.7055 -3.6621 3.8207 21 8 1.8990 -4.1974 4.7689 22 6 0.7166 -3.4674 5.1024 23 6 -0.0605 -4.2216 6.1833 24 9 -0.4138 -5.4882 5.7056 25 9 0.7395 -4.3592 7.3227 26 7 2.3737 -2.5117 3.2555 27 6 3.1239 -1.9518 2.3296 28 1 2.9713 0.2712 0.9914 29 1 2.9710 0.7242 -0.7299 30 1 2.8365 -1.6256 -1.3943 31 1 2.6787 -2.1307 0.3052 32 1 4.8909 -0.1224 -1.8529 33 1 6.3485 -0.5282 -0.9152 34 1 7.5340 -0.4172 -4.4001 35 1 5.5984 -4.2756 2.1868 36 1 4.1324 -5.2672 3.9226 37 1 0.9919 -2.4807 5.4750 38 1 0.0935 -3.3597 4.2146 39 1 -0.9621 -3.6645 6.4380 40 1 2.8207 -1.0123 1.8916 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090394769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:54 Heat of formation + Delta-G solvation = -119.306174 kcal Electronic energy + Delta-G solvation = -28631.818450 eV Core-core repulsion = 24082.814551 eV Total energy + Delta-G solvation = -4549.003900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.93439 -47.98436 -42.10668 -40.68965 -38.84054 -38.12750 -36.78283 -34.90457 -33.70934 -32.68599 -32.20653 -30.87780 -29.07029 -25.84206 -25.47947 -25.24402 -24.16636 -23.36177 -20.61908 -20.01476 -18.99395 -18.78920 -18.53391 -18.42522 -18.04234 -17.89236 -17.40681 -16.99014 -16.82691 -16.46499 -16.18952 -15.81747 -15.25013 -15.09457 -14.92981 -14.74242 -14.49103 -14.46913 -14.34666 -14.30175 -14.08073 -13.92585 -13.61233 -13.43205 -13.33007 -13.15901 -12.98539 -12.71854 -12.52996 -12.35558 -12.16747 -12.04408 -11.97107 -11.67345 -11.19518 -11.08585 -10.61190 -10.56194 -9.68811 -9.52982 -8.16884 -6.28603 -0.28876 0.05762 1.42228 1.44665 1.53306 1.61391 1.64236 1.77616 1.80947 2.18844 2.45065 2.60887 2.77580 2.97549 3.06965 3.15759 3.27623 3.49268 3.54026 3.66689 3.83449 3.92907 3.96087 4.03282 4.13235 4.31380 4.34642 4.39393 4.54812 4.67383 4.76652 4.93995 4.99584 5.16425 5.17348 5.36331 5.57723 5.85155 5.92570 6.13165 6.52941 6.56045 6.61842 6.80245 7.25228 7.43821 8.89989 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.002740 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.701259 B =10215.524050 C =11130.727966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.240 3.760 3 C -0.047 4.047 4 C 0.105 3.895 5 N -0.586 5.586 6 C 0.258 3.742 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.015 3.985 10 N -0.923 5.923 11 Si 0.956 3.044 12 H -0.268 1.268 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.560 3.440 16 O -0.577 6.577 17 C -0.218 4.218 18 C 0.004 3.996 19 C -0.182 4.182 20 C 0.328 3.672 21 O -0.305 6.305 22 C 0.009 3.991 23 C 0.268 3.732 24 F -0.216 7.216 25 F -0.215 7.215 26 N -0.541 5.541 27 C 0.165 3.835 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.012 0.988 34 H 0.266 0.734 35 H 0.153 0.847 36 H 0.170 0.830 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.184 0.816 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.450 -3.439 17.107 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.077 4.077 3 C -0.087 4.087 4 C -0.020 4.020 5 N -0.316 5.316 6 C 0.137 3.863 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.185 4.185 10 N -0.563 5.563 11 Si 0.781 3.219 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.348 3.652 16 O -0.457 6.457 17 C -0.224 4.224 18 C -0.021 4.021 19 C -0.202 4.202 20 C 0.150 3.850 21 O -0.212 6.212 22 C -0.067 4.067 23 C 0.215 3.785 24 F -0.197 7.197 25 F -0.197 7.197 26 N -0.265 5.265 27 C 0.009 3.991 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.170 0.830 36 H 0.187 0.813 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.201 0.799 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.164 -3.174 17.488 24.025 hybrid contribution 1.800 -0.892 -1.217 2.349 sum -14.363 -4.066 16.271 22.082 Atomic orbital electron populations 1.81250 1.14020 1.09552 1.10377 1.28951 0.94766 0.92172 0.91853 1.19955 0.80714 1.00623 1.07451 1.21713 0.79503 0.95911 1.04891 1.47981 1.06948 1.59911 1.16734 1.18941 0.90026 0.94073 0.83221 1.21733 1.31954 0.96709 1.07776 0.92790 1.25666 0.95401 0.97815 0.99572 1.70010 1.35329 1.21812 1.29110 0.85589 0.77696 0.79507 0.79072 1.19368 1.21091 1.19870 1.18326 0.86958 0.78143 0.81798 1.90769 1.16683 1.59027 1.79210 1.20786 0.99119 0.99832 1.02686 1.21579 0.97927 0.91990 0.90617 1.21173 0.93827 1.03942 1.01308 1.20120 0.88854 0.88802 0.87260 1.86246 1.34457 1.48064 1.52389 1.24181 0.85652 0.96936 0.99930 1.22703 0.94209 0.81393 0.80200 1.92994 1.92723 1.45366 1.88665 1.92993 1.77043 1.96318 1.53299 1.67355 1.34640 1.11339 1.13132 1.23260 0.87405 0.98783 0.89653 0.84871 0.84533 0.88783 0.88770 0.93694 0.97031 0.92515 0.82955 0.81284 0.87074 0.87439 0.79936 0.79643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.46 18.54 20.01 0.37 -12.09 16 2 C 0.24 5.01 15.37 89.44 1.38 6.38 16 3 C -0.05 -0.84 5.10 28.79 0.15 -0.69 16 4 C 0.10 2.58 4.83 86.38 0.42 3.00 16 5 N -0.59 -20.62 2.46 -829.80 -2.04 -22.67 16 6 C 0.26 11.85 5.22 85.63 0.45 12.29 16 7 C -0.54 -28.20 9.39 25.60 0.24 -27.96 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.02 0.80 5.46 84.66 0.46 1.27 16 10 N -0.92 -51.71 13.29 21.45 0.28 -51.42 16 11 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 15 C 0.56 20.55 7.29 86.72 0.63 21.19 16 16 O -0.58 -26.92 16.55 -3.99 -0.07 -26.99 16 17 C -0.22 -6.11 5.11 -20.00 -0.10 -6.21 16 18 C 0.00 0.11 9.84 22.70 0.22 0.34 16 19 C -0.18 -3.91 10.02 22.43 0.22 -3.68 16 20 C 0.33 7.29 7.49 84.83 0.64 7.93 16 21 O -0.30 -6.27 9.99 -88.01 -0.88 -7.15 16 22 C 0.01 0.12 5.52 71.98 0.40 0.52 16 23 C 0.27 2.97 5.63 71.98 0.41 3.38 16 24 F -0.22 -3.74 17.28 44.97 0.78 -2.96 16 25 F -0.22 -3.63 17.28 44.97 0.78 -2.85 16 26 N -0.54 -11.93 9.18 -307.82 -2.82 -14.76 16 27 C 0.17 3.75 8.58 85.03 0.73 4.48 16 28 H 0.13 1.82 6.20 -2.39 -0.01 1.81 16 29 H 0.14 2.29 8.07 -2.39 -0.02 2.27 16 30 H 0.09 2.44 8.13 -2.39 -0.02 2.42 16 31 H 0.09 2.09 5.03 -2.39 -0.01 2.08 16 32 H 0.05 1.99 8.00 -2.38 -0.02 1.97 16 33 H 0.01 0.62 7.35 -2.39 -0.02 0.61 16 34 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 35 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 36 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 37 H 0.11 1.25 8.10 -2.38 -0.02 1.23 16 38 H 0.11 1.30 8.10 -2.39 -0.02 1.28 16 39 H 0.18 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.19 3.41 3.63 -2.91 -0.01 3.40 16 Total: -1.00 -73.94 363.26 5.77 -68.17 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 1.11 Total: 6.13 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: 6.23 Total: 22.22 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -4.21 Total: -100.94 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.95 Total: -34.13 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 1.55 Total: -5.81 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -73.94 5.77 -68.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090394769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.135 kcal (2) G-P(sol) polarization free energy of solvation -73.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds