Wall clock time and date at job start Tue Mar 31 2020 22:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00422 * 2 1 4 4 H 1.48502 * 109.47468 * 270.00630 * 3 2 1 5 5 H 1.48500 * 109.46947 * 30.00170 * 3 2 1 6 6 H 1.48494 * 109.47661 * 149.99992 * 3 2 1 7 7 C 1.37876 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99861 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00262 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.34974 * 125.97275 * 125.00559 * 10 9 7 12 12 C 1.35236 * 107.86115 * 179.70391 * 11 10 9 13 13 C 1.40419 * 107.86713 * 0.43077 * 12 11 10 14 14 N 1.40084 * 125.97544 * 179.82500 * 13 12 11 15 15 C 1.34783 * 119.99934 * 359.71999 * 14 13 12 16 16 O 1.21594 * 119.99659 * 359.97438 * 15 14 13 17 17 C 1.47609 * 120.00215 * 179.97438 * 15 14 13 18 18 C 1.39632 * 120.18742 * 54.44654 * 17 15 14 19 19 C 1.37865 * 119.91164 * 179.75019 * 18 17 15 20 20 C 1.38496 * 120.30220 * 0.55036 * 19 18 17 21 21 C 1.38113 * 120.38163 * 359.70376 * 20 19 18 22 22 C 1.38704 * 120.08120 * 0.02562 * 21 20 19 23 23 N 1.39851 * 120.15444 * 179.97438 * 22 21 20 24 24 C 1.35148 * 127.39359 * 6.35950 * 23 22 21 25 25 N 1.30713 * 107.26248 * 179.97438 * 24 23 22 26 26 N 1.28417 * 110.65710 * 359.97438 * 25 24 23 27 27 N 1.28945 * 110.21772 * 359.74890 * 26 25 24 28 28 N 1.31227 * 108.05231 * 359.56117 * 13 12 11 29 29 H 0.97006 * 119.99609 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46907 * 60.00486 * 9 7 2 31 31 H 1.08994 * 109.47489 * 300.00518 * 9 7 2 32 32 H 1.07998 * 126.06816 * 359.97438 * 11 10 9 33 33 H 1.07994 * 126.06103 * 180.25087 * 12 11 10 34 34 H 0.97000 * 120.00576 * 179.71397 * 14 13 12 35 35 H 1.07996 * 120.04368 * 0.02562 * 18 17 15 36 36 H 1.08005 * 119.85061 * 180.30261 * 19 18 17 37 37 H 1.07998 * 119.81144 * 179.72333 * 20 19 18 38 38 H 1.08002 * 119.96402 * 180.02562 * 21 20 19 39 39 H 1.08001 * 126.36959 * 359.96028 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0022 11 6 4.8545 -3.1134 -0.8977 12 6 5.0608 -4.4041 -0.5504 13 6 4.2953 -4.6693 0.5965 14 7 4.2250 -5.8934 1.2740 15 6 4.9305 -6.9518 0.8282 16 8 5.6276 -6.8442 -0.1622 17 6 4.8568 -8.2415 1.5424 18 6 3.6190 -8.8411 1.7831 19 6 3.5571 -10.0483 2.4461 20 6 4.7171 -10.6646 2.8852 21 6 5.9476 -10.0800 2.6583 22 6 6.0287 -8.8684 1.9880 23 7 7.2739 -8.2747 1.7580 24 6 8.4929 -8.7990 2.0139 25 7 9.3811 -7.9126 1.6477 26 7 8.8076 -6.8642 1.1775 27 7 7.5264 -7.0071 1.2046 28 7 3.6618 -3.5684 0.9261 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6806 0.8889 31 1 3.8746 -0.6800 -0.8910 32 1 5.2985 -2.6026 -1.7392 33 1 5.6986 -5.1068 -1.0658 34 1 3.6686 -5.9794 2.0639 35 1 2.7115 -8.3621 1.4465 36 1 2.5995 -10.5136 2.6274 37 1 4.6591 -11.6080 3.4077 38 1 6.8479 -10.5667 3.0033 39 1 8.6956 -9.7698 2.4416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117714385.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:02 Heat of formation + Delta-G solvation = 228.191857 kcal Electronic energy + Delta-G solvation = -27901.047085 eV Core-core repulsion = 23850.093768 eV Total energy + Delta-G solvation = -4050.953317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.43075 -40.94181 -40.19455 -38.63983 -35.58947 -34.75690 -33.32906 -32.62587 -32.00219 -31.04996 -30.61098 -29.36569 -27.23348 -25.65592 -24.86026 -23.45489 -22.41351 -22.36776 -21.45126 -20.31938 -19.69960 -18.99856 -17.65767 -17.07351 -16.85034 -16.68780 -16.45712 -15.95359 -15.79375 -15.39362 -14.91084 -14.83253 -14.37314 -14.10365 -13.82346 -13.63434 -13.21980 -13.10973 -12.89109 -12.52250 -12.33392 -12.29714 -12.18935 -11.97035 -11.91714 -11.27225 -11.09393 -10.76598 -10.74483 -10.55717 -10.10875 -9.97762 -9.82666 -9.63307 -9.51036 -9.21172 -8.75823 -8.16604 -7.50095 -6.23014 -4.25036 -0.16241 0.39860 1.24678 1.44297 2.06061 2.25398 2.62062 2.84198 3.05016 3.16855 3.24337 3.25334 3.60520 3.66621 3.71721 3.79709 4.16974 4.24036 4.32863 4.39588 4.47147 4.61972 4.76047 4.96975 5.05179 5.10264 5.14149 5.45574 5.51772 5.54612 5.69825 5.71542 5.84346 6.17403 6.19003 6.40321 6.47644 6.57956 6.69113 7.25239 7.33622 7.55508 7.83839 8.13713 8.21155 8.34490 8.57433 8.86534 9.32333 10.89696 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017319 B = 0.002699 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.287644 B =10369.976332 C =11612.675001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.318 5.318 11 C 0.050 3.950 12 C -0.276 4.276 13 C 0.262 3.738 14 N -0.620 5.620 15 C 0.564 3.436 16 O -0.480 6.480 17 C -0.110 4.110 18 C -0.065 4.065 19 C -0.113 4.113 20 C -0.076 4.076 21 C -0.127 4.127 22 C 0.176 3.824 23 N -0.340 5.340 24 C 0.220 3.780 25 N -0.331 5.331 26 N -0.039 5.039 27 N -0.023 5.023 28 N -0.296 5.296 29 H 0.268 0.732 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.411 0.589 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.917 -25.222 7.484 28.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.127 4.127 3 Si 0.698 3.302 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.100 5.100 11 C -0.099 4.099 12 C -0.307 4.307 13 C 0.009 3.991 14 N -0.268 5.268 15 C 0.348 3.652 16 O -0.351 6.351 17 C -0.115 4.115 18 C -0.084 4.084 19 C -0.132 4.132 20 C -0.095 4.095 21 C -0.149 4.149 22 C 0.082 3.918 23 N -0.131 5.131 24 C -0.077 4.077 25 N -0.178 5.178 26 N -0.034 5.034 27 N -0.008 5.008 28 N -0.127 5.127 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.246 0.754 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 10.949 -23.041 7.013 26.457 hybrid contribution 0.037 -0.323 0.163 0.364 sum 10.986 -23.365 7.176 26.798 Atomic orbital electron populations 1.69872 1.06157 1.27282 1.49268 1.24825 0.94868 0.98795 0.94253 0.86912 0.80476 0.83818 0.78953 1.19688 1.20546 1.18827 1.21109 0.87793 0.95686 1.52586 0.89648 1.20048 0.97421 0.73029 0.98223 1.48596 1.32592 1.10197 1.18631 1.22553 0.95894 0.94699 0.96722 1.21521 1.10753 0.96860 1.01549 1.18992 0.99087 0.86369 0.94656 1.42237 1.46975 1.07364 1.30188 1.17711 0.80015 0.82622 0.84851 1.90790 1.37231 1.82614 1.24480 1.19653 0.92745 0.97010 1.02137 1.21389 0.96060 0.95337 0.95596 1.21334 0.99495 0.94889 0.97439 1.21210 0.91011 0.99790 0.97476 1.20845 1.00150 0.93327 1.00530 1.17400 0.80841 0.93632 0.99930 1.49136 1.06358 1.14291 1.43271 1.27428 0.80250 1.01839 0.98188 1.74463 1.27707 0.98721 1.16872 1.78177 0.99133 1.15353 1.10783 1.83258 1.10490 0.94199 1.12816 1.77378 1.23915 0.95515 1.15902 0.92198 0.94026 0.93305 0.81386 0.82104 0.75402 0.83522 0.84002 0.83877 0.84059 0.74621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 20.32 27.47 -169.99 -4.67 15.65 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.53 -15.13 9.79 -34.44 -0.34 -15.47 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 C 0.23 5.58 5.33 -5.19 -0.03 5.55 16 10 N -0.32 -7.35 3.67 -62.56 -0.23 -7.58 16 11 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 12 C -0.28 -5.55 9.60 -39.83 -0.38 -5.93 16 13 C 0.26 5.31 8.10 -154.45 -1.25 4.05 16 14 N -0.62 -9.76 5.42 -12.06 -0.07 -9.82 16 15 C 0.56 8.35 5.92 -12.43 -0.07 8.27 16 16 O -0.48 -8.63 11.71 5.28 0.06 -8.57 16 17 C -0.11 -1.14 5.65 -104.83 -0.59 -1.73 16 18 C -0.06 -0.46 9.73 -39.20 -0.38 -0.84 16 19 C -0.11 -0.48 10.02 -39.62 -0.40 -0.88 16 20 C -0.08 -0.25 10.03 -39.53 -0.40 -0.65 16 21 C -0.13 -0.59 9.48 -39.46 -0.37 -0.96 16 22 C 0.18 1.59 6.70 -83.30 -0.56 1.03 16 23 N -0.34 -3.84 3.81 -11.53 -0.04 -3.89 16 24 C 0.22 1.90 12.15 -90.10 -1.09 0.81 16 25 N -0.33 -4.27 12.15 29.65 0.36 -3.91 16 26 N -0.04 -0.63 13.39 60.35 0.81 0.17 16 27 N -0.02 -0.36 9.74 60.35 0.59 0.23 16 28 N -0.30 -6.86 12.42 31.43 0.39 -6.47 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.04 1.00 7.20 -51.93 -0.37 0.63 16 31 H 0.05 1.07 7.50 -51.93 -0.39 0.68 16 32 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 33 H 0.16 3.21 5.91 -52.49 -0.31 2.90 16 34 H 0.41 5.30 8.78 -40.82 -0.36 4.94 16 35 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.14 0.26 8.06 -52.48 -0.42 -0.16 16 37 H 0.14 0.04 8.06 -52.49 -0.42 -0.38 16 38 H 0.14 0.17 6.91 -52.49 -0.36 -0.20 16 39 H 0.24 0.48 7.23 -52.49 -0.38 0.10 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -38.95 346.01 -6.43 -45.38 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.45 Total: 3.36 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -6.16 Total: -3.88 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 2.58 Total: -57.16 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.06 Total: -8.57 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -38.95 -6.43 -45.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117714385.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 273.569 kcal (2) G-P(sol) polarization free energy of solvation -38.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 234.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 228.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds