Wall clock time and date at job start Tue Mar 31 2020 22:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00270 * 2 1 4 4 H 1.48494 * 109.47484 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47113 * 300.00026 * 3 2 1 6 6 H 1.48510 * 109.46928 * 59.99924 * 3 2 1 7 7 C 1.37875 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00307 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.34972 * 125.97398 * 125.00067 * 10 9 7 12 12 C 1.35237 * 107.86532 * 179.71749 * 11 10 9 13 13 C 1.40425 * 107.86943 * 0.24298 * 12 11 10 14 14 N 1.40065 * 125.97645 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00085 * 359.97438 * 14 13 12 16 16 O 1.21525 * 119.99672 * 0.02562 * 15 14 13 17 17 C 1.48121 * 119.99791 * 179.97438 * 15 14 13 18 18 C 1.39951 * 120.89735 * 0.02562 * 17 15 14 19 19 C 1.38044 * 119.13616 * 179.97438 * 18 17 15 20 20 N 1.31845 * 120.98311 * 359.97438 * 19 18 17 21 21 C 1.32241 * 121.97337 * 0.02562 * 20 19 18 22 22 N 1.39872 * 119.62085 * 179.97438 * 21 20 19 23 23 C 1.34802 * 126.84395 * 359.97438 * 22 21 20 24 24 N 1.30817 * 108.01585 * 179.97438 * 23 22 21 25 25 C 1.33293 * 109.84722 * 0.02562 * 24 23 22 26 26 N 1.30714 * 109.01400 * 359.75090 * 25 24 23 27 27 C 1.38889 * 120.75384 * 359.74017 * 21 20 19 28 28 N 1.31243 * 108.04425 * 359.97438 * 13 12 11 29 29 H 0.97000 * 120.00192 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47049 * 59.99500 * 9 7 2 31 31 H 1.09001 * 109.46419 * 299.99527 * 9 7 2 32 32 H 1.08002 * 126.06889 * 359.97438 * 11 10 9 33 33 H 1.08006 * 126.06164 * 180.27871 * 12 11 10 34 34 H 0.96998 * 119.99877 * 179.97438 * 14 13 12 35 35 H 1.08002 * 120.43436 * 359.94893 * 18 17 15 36 36 H 1.08009 * 119.51240 * 180.02562 * 19 18 17 37 37 H 1.08001 * 125.99557 * 359.97438 * 23 22 21 38 38 H 1.08000 * 125.49034 * 180.02562 * 25 24 23 39 39 H 1.08004 * 120.53113 * 180.28047 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4993 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2420 -4.6225 0.8953 12 6 3.2566 -5.4461 0.5473 13 6 3.8660 -4.9174 -0.6020 14 7 4.9583 -5.4702 -1.2825 15 6 5.5191 -6.6134 -0.8407 16 8 5.0766 -7.1648 0.1477 17 6 6.6738 -7.1983 -1.5607 18 6 7.1980 -6.5794 -2.7012 19 6 8.2754 -7.1558 -3.3437 20 7 8.8124 -8.2744 -2.8979 21 6 8.3505 -8.8938 -1.8247 22 7 8.9576 -10.0785 -1.3953 23 6 10.0078 -10.7016 -1.9662 24 7 10.2719 -11.7740 -1.2652 25 6 9.4180 -11.8703 -0.2462 26 7 8.5976 -10.8532 -0.2806 27 6 7.2724 -8.3789 -1.1164 28 7 3.2330 -3.8146 -0.9270 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8904 32 1 1.5780 -4.7521 1.7371 33 1 3.5464 -6.3504 1.0619 34 1 5.3112 -5.0303 -2.0717 35 1 6.7651 -5.6629 -3.0742 36 1 8.6850 -6.6831 -4.2242 37 1 10.5383 -10.3730 -2.8477 38 1 9.4087 -12.6588 0.4916 39 1 6.9010 -8.8854 -0.2377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117714937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:18 Heat of formation + Delta-G solvation = 199.004090 kcal Electronic energy + Delta-G solvation = -26654.728493 eV Core-core repulsion = 22602.509500 eV Total energy + Delta-G solvation = -4052.218993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.81275 -41.24551 -40.53685 -39.17633 -35.20016 -34.74757 -33.58280 -33.18900 -31.76214 -31.08115 -30.44178 -29.45006 -27.02041 -25.71436 -24.88172 -23.39903 -22.79664 -22.08522 -21.57876 -20.56223 -19.90480 -18.90094 -17.70794 -17.03307 -16.66307 -16.52443 -16.36271 -15.91891 -15.89169 -15.49690 -15.35369 -14.86082 -14.56681 -14.47050 -14.39368 -14.19815 -13.88027 -12.92042 -12.73381 -12.68132 -12.43548 -12.34411 -11.90803 -11.51977 -11.14976 -10.95747 -10.71001 -10.62910 -10.55612 -10.50794 -10.37270 -10.33076 -10.19856 -9.83611 -9.57673 -9.23509 -8.70168 -8.28120 -7.62094 -6.30750 -4.36099 -0.13802 0.22494 1.30417 1.40312 2.26676 2.41990 2.43699 2.78589 3.17731 3.19162 3.25568 3.31198 3.52246 3.62214 3.67530 3.86126 3.93584 4.08350 4.26013 4.29619 4.36091 4.53181 4.71399 5.04491 5.06281 5.10244 5.38570 5.43414 5.59246 5.63973 5.72763 5.86950 6.06345 6.34542 6.34745 6.42946 6.76065 6.96079 6.96923 7.18488 7.38483 7.53242 7.63292 7.79520 7.91968 7.93072 8.48709 8.72696 9.29932 10.78088 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025508 B = 0.001920 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.437958 B =14581.993076 C =15293.135935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.257 3.743 10 N -0.315 5.315 11 C 0.054 3.946 12 C -0.286 4.286 13 C 0.252 3.748 14 N -0.618 5.618 15 C 0.563 3.437 16 O -0.497 6.497 17 C -0.054 4.054 18 C -0.147 4.147 19 C 0.136 3.864 20 N -0.488 5.488 21 C 0.358 3.642 22 N -0.334 5.334 23 C 0.292 3.708 24 N -0.540 5.540 25 C 0.215 3.785 26 N -0.304 5.304 27 C -0.097 4.097 28 N -0.299 5.299 29 H 0.267 0.733 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.411 0.589 35 H 0.153 0.847 36 H 0.180 0.820 37 H 0.229 0.771 38 H 0.228 0.772 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.102 -18.061 -5.896 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.097 5.097 11 C -0.096 4.096 12 C -0.317 4.317 13 C 0.000 4.000 14 N -0.265 5.265 15 C 0.347 3.653 16 O -0.370 6.370 17 C -0.066 4.066 18 C -0.168 4.168 19 C -0.022 4.022 20 N -0.201 5.201 21 C 0.130 3.870 22 N -0.120 5.120 23 C -0.004 4.004 24 N -0.266 5.266 25 C -0.088 4.088 26 N -0.129 5.129 27 C -0.120 4.120 28 N -0.130 5.130 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.187 0.813 33 H 0.178 0.822 34 H 0.248 0.752 35 H 0.171 0.829 36 H 0.197 0.803 37 H 0.245 0.755 38 H 0.244 0.756 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 16.838 -17.746 -5.960 25.178 hybrid contribution -0.062 1.066 0.373 1.131 sum 16.775 -16.681 -5.587 24.308 Atomic orbital electron populations 1.69922 1.06045 1.27608 1.49644 1.24950 0.94997 0.99596 0.94546 0.86267 0.80019 0.82415 0.77769 1.19573 1.20661 1.20733 1.21281 0.94015 0.89313 1.52194 0.91226 1.19802 0.85576 0.81253 0.99436 1.49131 1.22893 1.19703 1.17942 1.22591 1.00238 0.90051 0.96731 1.21525 1.02270 1.06333 1.01597 1.18988 0.91506 0.94582 0.94935 1.42162 1.30011 1.24115 1.30251 1.17838 0.82649 0.80367 0.84402 1.90766 1.61457 1.60052 1.24741 1.20141 0.95826 0.95102 0.95558 1.22511 0.97623 1.01526 0.95142 1.22550 0.91962 0.89099 0.98547 1.66711 1.31103 1.10486 1.11825 1.17476 0.91623 0.85787 0.92080 1.47509 1.24928 1.18193 1.21354 1.26447 0.87406 0.88195 0.98361 1.70742 1.28112 1.19477 1.08237 1.26335 0.89204 0.96551 0.96690 1.78287 1.24527 1.06833 1.03283 1.21736 0.93958 0.95140 1.01185 1.77342 1.03522 1.15840 1.16308 0.92314 0.93570 0.92377 0.81256 0.82207 0.75194 0.82919 0.80262 0.75510 0.75598 0.81742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.30 9.23 -34.44 -0.32 -14.62 16 8 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 9 C 0.26 6.29 6.26 -5.19 -0.03 6.26 16 10 N -0.31 -7.00 3.67 -62.56 -0.23 -7.23 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.38 9.60 -39.83 -0.38 -5.76 16 13 C 0.25 4.74 8.11 -154.46 -1.25 3.49 16 14 N -0.62 -8.63 5.40 -11.91 -0.06 -8.69 16 15 C 0.56 7.54 7.76 -12.20 -0.09 7.45 16 16 O -0.50 -8.21 13.57 5.34 0.07 -8.14 16 17 C -0.05 -0.54 5.91 -104.68 -0.62 -1.16 16 18 C -0.15 -0.97 9.61 -39.01 -0.37 -1.34 16 19 C 0.14 0.78 11.17 -17.62 -0.20 0.58 16 20 N -0.49 -3.90 9.87 -12.33 -0.12 -4.03 16 21 C 0.36 3.51 7.56 -154.39 -1.17 2.34 16 22 N -0.33 -3.36 3.81 -13.36 -0.05 -3.41 16 23 C 0.29 2.44 12.26 -90.33 -1.11 1.33 16 24 N -0.54 -5.05 11.19 -15.73 -0.18 -5.22 16 25 C 0.21 1.83 13.03 -91.77 -1.20 0.64 16 26 N -0.30 -3.24 12.02 29.30 0.35 -2.89 16 27 C -0.10 -1.03 9.29 -38.82 -0.36 -1.39 16 28 N -0.30 -6.50 12.42 31.43 0.39 -6.11 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 32 H 0.17 2.61 8.06 -52.49 -0.42 2.18 16 33 H 0.16 2.91 5.91 -52.48 -0.31 2.60 16 34 H 0.41 4.35 6.96 -40.82 -0.28 4.07 16 35 H 0.15 0.61 6.53 -52.49 -0.34 0.27 16 36 H 0.18 0.37 8.06 -52.48 -0.42 -0.05 16 37 H 0.23 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.23 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.17 1.94 7.41 -52.48 -0.39 1.56 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -34.68 354.14 -9.57 -44.25 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.40 Total: 4.09 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -7.39 Total: 0.23 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.84 Total: -61.57 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.07 Total: -8.14 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.68 -9.57 -44.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117714937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.253 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 199.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds