Wall clock time and date at job start Tue Mar 31 2020 22:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00270 * 2 1 4 4 H 1.48494 * 109.47484 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47113 * 300.00026 * 3 2 1 6 6 H 1.48510 * 109.46928 * 59.99924 * 3 2 1 7 7 C 1.37875 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00307 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.34972 * 125.97398 * 125.00067 * 10 9 7 12 12 C 1.35237 * 107.86532 * 179.71749 * 11 10 9 13 13 C 1.40425 * 107.86943 * 0.24298 * 12 11 10 14 14 N 1.40065 * 125.97645 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00085 * 359.97438 * 14 13 12 16 16 O 1.21525 * 119.99672 * 0.02562 * 15 14 13 17 17 C 1.48121 * 119.99791 * 179.97438 * 15 14 13 18 18 C 1.39951 * 120.89735 * 0.02562 * 17 15 14 19 19 C 1.38044 * 119.13616 * 179.97438 * 18 17 15 20 20 N 1.31845 * 120.98311 * 359.97438 * 19 18 17 21 21 C 1.32241 * 121.97337 * 0.02562 * 20 19 18 22 22 N 1.39872 * 119.62085 * 179.97438 * 21 20 19 23 23 C 1.34802 * 126.84395 * 359.97438 * 22 21 20 24 24 N 1.30817 * 108.01585 * 179.97438 * 23 22 21 25 25 C 1.33293 * 109.84722 * 0.02562 * 24 23 22 26 26 N 1.30714 * 109.01400 * 359.75090 * 25 24 23 27 27 C 1.38889 * 120.75384 * 359.74017 * 21 20 19 28 28 N 1.31243 * 108.04425 * 359.97438 * 13 12 11 29 29 H 0.97000 * 120.00192 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47049 * 59.99500 * 9 7 2 31 31 H 1.09001 * 109.46419 * 299.99527 * 9 7 2 32 32 H 1.08002 * 126.06889 * 359.97438 * 11 10 9 33 33 H 1.08006 * 126.06164 * 180.27871 * 12 11 10 34 34 H 0.96998 * 119.99877 * 179.97438 * 14 13 12 35 35 H 1.08002 * 120.43436 * 359.94893 * 18 17 15 36 36 H 1.08009 * 119.51240 * 180.02562 * 19 18 17 37 37 H 1.08001 * 125.99557 * 359.97438 * 23 22 21 38 38 H 1.08000 * 125.49034 * 180.02562 * 25 24 23 39 39 H 1.08004 * 120.53113 * 180.28047 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4993 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2420 -4.6225 0.8953 12 6 3.2566 -5.4461 0.5473 13 6 3.8660 -4.9174 -0.6020 14 7 4.9583 -5.4702 -1.2825 15 6 5.5191 -6.6134 -0.8407 16 8 5.0766 -7.1648 0.1477 17 6 6.6738 -7.1983 -1.5607 18 6 7.1980 -6.5794 -2.7012 19 6 8.2754 -7.1558 -3.3437 20 7 8.8124 -8.2744 -2.8979 21 6 8.3505 -8.8938 -1.8247 22 7 8.9576 -10.0785 -1.3953 23 6 10.0078 -10.7016 -1.9662 24 7 10.2719 -11.7740 -1.2652 25 6 9.4180 -11.8703 -0.2462 26 7 8.5976 -10.8532 -0.2806 27 6 7.2724 -8.3789 -1.1164 28 7 3.2330 -3.8146 -0.9270 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8904 32 1 1.5780 -4.7521 1.7371 33 1 3.5464 -6.3504 1.0619 34 1 5.3112 -5.0303 -2.0717 35 1 6.7651 -5.6629 -3.0742 36 1 8.6850 -6.6831 -4.2242 37 1 10.5383 -10.3730 -2.8477 38 1 9.4087 -12.6588 0.4916 39 1 6.9010 -8.8854 -0.2377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117714937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:17 Heat of formation + Delta-G solvation = 178.815785 kcal Electronic energy + Delta-G solvation = -26655.603924 eV Core-core repulsion = 22602.509500 eV Total energy + Delta-G solvation = -4053.094424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.46753 -42.40809 -41.61453 -40.28381 -36.46210 -35.63006 -35.22634 -34.09045 -32.75693 -32.40464 -31.18400 -30.95604 -28.73521 -26.70659 -25.63249 -24.84421 -23.83098 -22.86796 -22.58094 -21.89914 -21.16927 -19.84327 -18.70723 -18.50633 -18.28755 -17.30132 -17.21643 -16.96615 -16.79419 -16.66642 -16.43062 -16.12561 -15.71154 -15.52063 -15.25297 -15.06086 -14.98614 -14.51464 -14.26434 -13.90054 -13.71023 -13.36369 -13.29565 -12.95668 -12.74319 -12.32261 -12.18771 -12.12385 -11.76652 -11.47533 -11.39643 -11.31466 -11.27177 -11.07179 -10.91383 -10.72741 -9.86104 -9.82374 -9.20088 -8.33662 -6.47407 -0.82249 -0.47789 0.67083 0.77008 0.99785 1.18444 1.37841 1.39314 1.47243 1.52694 1.79613 2.12848 2.15820 2.36487 2.58551 2.98685 3.00424 3.16578 3.27534 3.35724 3.63766 3.73660 3.87263 3.97808 4.16015 4.22401 4.45176 4.51480 4.65618 4.75771 4.85442 4.90400 4.98925 5.00274 5.05853 5.15585 5.28669 5.56437 5.72932 5.78312 5.81646 6.10664 6.24100 6.36123 6.63598 6.77830 6.88735 6.99027 7.22734 8.74378 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025508 B = 0.001920 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.437958 B =14581.993076 C =15293.135935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.271 3.729 10 N -0.340 5.340 11 C 0.059 3.941 12 C -0.295 4.295 13 C 0.263 3.737 14 N -0.609 5.609 15 C 0.567 3.433 16 O -0.533 6.533 17 C -0.065 4.065 18 C -0.129 4.129 19 C 0.150 3.850 20 N -0.484 5.484 21 C 0.347 3.653 22 N -0.345 5.345 23 C 0.296 3.704 24 N -0.559 5.559 25 C 0.218 3.782 26 N -0.343 5.343 27 C -0.113 4.113 28 N -0.336 5.336 29 H 0.272 0.728 30 H 0.024 0.976 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.166 0.834 34 H 0.428 0.572 35 H 0.184 0.816 36 H 0.228 0.772 37 H 0.258 0.742 38 H 0.258 0.742 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.109 -17.674 -7.389 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.072 0.928 9 C 0.152 3.848 10 N -0.122 5.122 11 C -0.090 4.090 12 C -0.326 4.326 13 C 0.009 3.991 14 N -0.259 5.259 15 C 0.354 3.646 16 O -0.408 6.408 17 C -0.077 4.077 18 C -0.150 4.150 19 C -0.008 4.008 20 N -0.198 5.198 21 C 0.120 3.880 22 N -0.131 5.131 23 C 0.001 3.999 24 N -0.285 5.285 25 C -0.084 4.084 26 N -0.168 5.168 27 C -0.136 4.136 28 N -0.167 5.167 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.219 0.781 33 H 0.184 0.816 34 H 0.268 0.732 35 H 0.201 0.799 36 H 0.244 0.756 37 H 0.273 0.727 38 H 0.274 0.726 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 18.866 -17.385 -7.465 26.719 hybrid contribution -0.593 0.828 0.781 1.284 sum 18.273 -16.556 -6.685 25.548 Atomic orbital electron populations 1.69998 1.07220 1.28708 1.49987 1.25738 0.95833 1.02744 0.93929 0.85291 0.78470 0.78383 0.78218 1.19753 1.19841 1.19779 1.21426 0.93435 0.90857 1.52725 0.92770 1.19386 0.85658 0.81459 0.98286 1.48874 1.23627 1.20272 1.19465 1.23171 1.00398 0.88754 0.96690 1.21720 1.02413 1.06540 1.01908 1.19290 0.91704 0.93447 0.94665 1.42193 1.28812 1.24294 1.30573 1.18374 0.82842 0.79501 0.83884 1.90739 1.62673 1.60884 1.26470 1.19817 0.95256 0.95544 0.97040 1.22883 0.97087 1.01858 0.93147 1.23393 0.90734 0.87793 0.98896 1.66862 1.30973 1.11082 1.10860 1.17509 0.91664 0.86109 0.92673 1.47571 1.25485 1.18484 1.21518 1.27069 0.86685 0.87572 0.98588 1.70781 1.28709 1.20180 1.08845 1.27011 0.88166 0.96497 0.96772 1.78255 1.26063 1.07930 1.04536 1.21552 0.95067 0.95801 1.01212 1.77260 1.04501 1.17558 1.17350 0.91861 0.95797 0.92317 0.78144 0.81628 0.73210 0.79884 0.75594 0.72652 0.72598 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.07 13.29 21.45 0.28 -50.79 16 2 C 0.02 0.97 5.46 84.65 0.46 1.43 16 3 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.55 -29.92 9.23 25.60 0.24 -29.69 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.27 13.61 6.26 85.64 0.54 14.14 16 10 N -0.34 -15.36 3.67 -351.84 -1.29 -16.65 16 11 C 0.06 2.22 11.44 83.52 0.96 3.18 16 12 C -0.29 -11.08 9.60 22.11 0.21 -10.87 16 13 C 0.26 9.84 8.11 133.35 1.08 10.92 16 14 N -0.61 -16.40 5.40 -309.90 -1.67 -18.08 16 15 C 0.57 14.96 7.76 86.87 0.67 15.64 16 16 O -0.53 -17.95 13.57 -3.79 -0.05 -18.00 16 17 C -0.06 -1.22 5.91 -19.90 -0.12 -1.34 16 18 C -0.13 -1.26 9.61 22.64 0.22 -1.05 16 19 C 0.15 1.09 11.17 84.64 0.95 2.03 16 20 N -0.48 -6.40 9.87 -192.93 -1.90 -8.30 16 21 C 0.35 6.48 7.56 132.75 1.00 7.48 16 22 N -0.34 -6.79 3.81 -196.17 -0.75 -7.53 16 23 C 0.30 4.59 12.26 180.25 2.21 6.80 16 24 N -0.56 -9.96 11.19 -203.69 -2.28 -12.24 16 25 C 0.22 3.63 13.03 180.75 2.35 5.98 16 26 N -0.34 -7.44 12.02 -61.21 -0.74 -8.17 16 27 C -0.11 -2.41 9.29 22.76 0.21 -2.20 16 28 N -0.34 -14.72 12.42 -54.49 -0.68 -15.40 16 29 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 2.89 8.07 -2.39 -0.02 2.87 16 32 H 0.20 6.00 8.06 -2.91 -0.02 5.98 16 33 H 0.17 6.06 5.91 -2.91 -0.02 6.04 16 34 H 0.43 8.21 6.96 -92.71 -0.65 7.57 16 35 H 0.18 0.64 6.53 -2.91 -0.02 0.62 16 36 H 0.23 -0.47 8.06 -2.91 -0.02 -0.50 16 37 H 0.26 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.26 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.14 3.63 7.41 -2.91 -0.02 3.61 16 Total: -1.00 -77.52 354.14 4.43 -73.10 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.49 Total: 15.08 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 10.98 Total: 22.47 kcal Atomic # 7 Polarization: -128.14 SS G_CDS: -9.02 Total: -137.16 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.05 Total: -18.00 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -77.52 4.43 -73.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117714937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.912 kcal (2) G-P(sol) polarization free energy of solvation -77.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds