Wall clock time and date at job start Tue Mar 31 2020 22:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 117.00014 * 2 1 4 4 O 1.20821 * 120.00432 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99758 * 179.97438 * 3 2 1 6 6 N 1.46510 * 109.46824 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99682 * 96.09688 * 6 5 3 8 8 H 1.08002 * 119.99390 * 162.80328 * 7 6 5 9 9 C 1.38950 * 120.00259 * 342.80612 * 7 6 5 10 10 N 1.31402 * 119.99809 * 339.57223 * 9 7 6 11 11 Si 1.86804 * 119.99742 * 159.29486 * 9 7 6 12 12 H 1.48505 * 109.46848 * 90.00250 * 11 9 7 13 13 H 1.48498 * 109.46948 * 209.99780 * 11 9 7 14 14 H 1.48501 * 109.47235 * 330.00127 * 11 9 7 15 15 C 1.34771 * 119.99925 * 276.09843 * 6 5 3 16 16 O 1.21295 * 120.00089 * 359.97438 * 15 6 5 17 17 C 1.50698 * 120.00092 * 180.02562 * 15 6 5 18 18 H 1.08999 * 115.54865 * 34.32543 * 17 15 6 19 19 C 1.52999 * 117.50023 * 248.62032 * 17 15 6 20 20 C 1.52997 * 60.00082 * 252.50725 * 19 17 15 21 21 H 1.09003 * 117.51903 * 252.51572 * 20 19 17 22 22 C 1.50704 * 117.49903 * 107.48593 * 20 19 17 23 23 C 1.38227 * 119.98824 * 351.38132 * 22 20 19 24 24 C 1.38185 * 120.05326 * 179.97438 * 23 22 20 25 25 C 1.38497 * 120.02069 * 0.02562 * 24 23 22 26 26 F 1.35103 * 120.01122 * 179.97438 * 25 24 23 27 27 C 1.38399 * 119.97912 * 0.02562 * 25 24 23 28 28 C 1.38445 * 119.94535 * 359.72284 * 27 25 24 29 29 F 1.35099 * 120.01059 * 180.27380 * 28 27 25 30 30 H 1.08995 * 109.47226 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47240 * 299.99711 * 1 2 3 32 32 H 1.09003 * 109.47237 * 59.99669 * 1 2 3 33 33 H 1.08997 * 109.47314 * 60.00708 * 5 3 2 34 34 H 1.09000 * 109.47431 * 300.00058 * 5 3 2 35 35 H 0.97008 * 120.00199 * 180.02562 * 10 9 7 36 36 H 1.09011 * 117.49462 * 0.02562 * 19 17 15 37 37 H 1.08993 * 117.50185 * 145.01561 * 19 17 15 38 38 H 1.08004 * 119.97172 * 359.97135 * 23 22 20 39 39 H 1.07995 * 119.99083 * 180.02562 * 24 23 22 40 40 H 1.07996 * 120.03027 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.2966 3.3010 1.1820 8 1 4.8583 4.2234 1.1738 9 6 3.8930 2.7440 2.3893 10 7 2.9016 1.8820 2.4163 11 14 4.7649 3.2147 3.9728 12 1 4.0925 4.3931 4.5766 13 1 4.7142 2.0749 4.9234 14 1 6.1810 3.5502 3.6773 15 6 4.0543 3.3614 -1.1593 16 8 3.7762 2.8115 -2.2041 17 6 4.4821 4.8063 -1.1589 18 1 5.2269 5.0759 -0.4101 19 6 3.4275 5.8555 -1.5165 20 6 4.5447 5.5250 -2.5081 21 1 5.3307 6.2674 -2.6470 22 6 4.1738 4.7337 -3.7359 23 6 2.9109 4.1829 -3.8474 24 6 2.5692 3.4575 -4.9728 25 6 3.4922 3.2810 -5.9901 26 9 3.1581 2.5713 -7.0901 27 6 4.7574 3.8311 -5.8791 28 6 5.0968 4.5621 -4.7534 29 9 6.3296 5.1042 -4.6462 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 3.9564 0.7806 -0.8892 34 1 3.9557 0.7808 0.8908 35 1 2.6195 1.4933 3.2592 36 1 2.4240 5.5005 -1.7516 37 1 3.4781 6.8155 -1.0028 38 1 2.1906 4.3197 -3.0543 39 1 1.5821 3.0280 -5.0591 40 1 5.4777 3.6943 -6.6721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120599879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:47 Heat of formation + Delta-G solvation = -131.060353 kcal Electronic energy + Delta-G solvation = -30431.097070 eV Core-core repulsion = 25849.290720 eV Total energy + Delta-G solvation = -4581.806350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.70992 -48.65032 -39.92890 -39.18523 -37.93882 -36.10450 -35.15013 -34.61158 -31.67877 -30.44959 -29.89675 -28.66275 -26.46950 -25.04680 -23.82164 -23.04884 -22.45212 -20.61465 -20.03707 -19.17216 -18.07320 -17.18625 -16.92392 -16.62940 -16.39227 -15.66633 -15.55090 -15.43294 -15.35883 -15.01068 -14.96339 -14.56603 -14.23017 -14.16616 -14.09331 -13.58168 -13.31230 -12.81249 -12.53921 -12.37358 -12.36378 -12.04314 -11.78776 -11.50167 -11.35532 -11.33672 -11.13613 -10.98436 -10.86585 -10.65360 -10.50405 -10.15056 -9.97448 -9.87301 -9.63289 -9.08492 -8.96901 -8.38979 -8.02070 -7.75498 -6.58157 -4.06781 1.33652 1.47874 3.00749 3.13749 3.16593 3.29940 3.59347 3.65955 3.92853 4.01658 4.20525 4.37083 4.53415 4.78093 4.80849 4.97347 5.00013 5.18775 5.36321 5.41463 5.50001 5.59775 5.65547 5.72858 5.89647 5.91542 6.04350 6.12923 6.16427 6.20527 6.26892 6.34854 6.36984 6.45038 6.53639 6.60593 6.77139 7.16656 7.27100 7.39516 7.51344 8.14564 8.89767 9.03907 9.27394 9.67434 10.48845 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.004515 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.712375 B = 6200.690179 C = 7828.847259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.487 3.513 4 O -0.500 6.500 5 C 0.157 3.843 6 N -0.420 5.420 7 C -0.334 4.334 8 H 0.105 0.895 9 C 0.038 3.962 10 N -0.869 5.869 11 Si 0.924 3.076 12 H -0.277 1.277 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.492 3.508 16 O -0.587 6.587 17 C -0.136 4.136 18 H 0.124 0.876 19 C -0.143 4.143 20 C -0.107 4.107 21 H 0.117 0.883 22 C -0.068 4.068 23 C 0.016 3.984 24 C -0.170 4.170 25 C 0.118 3.882 26 F -0.142 7.142 27 C -0.206 4.206 28 C 0.125 3.875 29 F -0.138 7.138 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.273 0.727 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 2.476 -7.043 7.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.328 3.672 4 O -0.385 6.385 5 C 0.031 3.969 6 N -0.137 5.137 7 C -0.461 4.461 8 H 0.122 0.878 9 C -0.167 4.167 10 N -0.506 5.506 11 Si 0.750 3.250 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.193 1.193 15 C 0.281 3.719 16 O -0.473 6.473 17 C -0.157 4.157 18 H 0.142 0.858 19 C -0.180 4.180 20 C -0.126 4.126 21 H 0.135 0.865 22 C -0.069 4.069 23 C -0.002 4.002 24 C -0.189 4.189 25 C 0.098 3.902 26 F -0.121 7.121 27 C -0.225 4.225 28 C 0.106 3.894 29 F -0.117 7.117 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.140 0.860 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.163 2.361 -7.397 7.767 hybrid contribution 0.230 0.060 1.126 1.151 sum 0.067 2.421 -6.271 6.723 Atomic orbital electron populations 1.22928 0.78666 1.01840 1.01596 1.86459 1.21703 1.35504 1.85658 1.23902 0.92212 0.80560 0.70542 1.90500 1.66496 1.36335 1.45142 1.20476 0.87308 0.85517 1.03620 1.43371 1.56263 1.07875 1.06159 1.19633 1.34170 1.10148 0.82185 0.87751 1.25214 0.94824 0.96967 0.99662 1.69823 1.22724 1.30122 1.27980 0.85981 0.79863 0.78283 0.80882 1.20313 1.20658 1.19263 1.19247 0.82134 0.86750 0.83740 1.90563 1.55827 1.69665 1.31257 1.22134 1.03257 0.92958 0.97310 0.85847 1.22995 0.94908 0.99207 1.00896 1.20935 1.02414 1.01269 0.87943 0.86528 1.18916 0.93682 1.00569 0.93725 1.20515 0.94941 0.90593 0.94154 1.20966 1.00179 1.03636 0.94156 1.17198 0.93535 0.95076 0.84359 1.91467 1.92806 1.76245 1.51594 1.20683 0.97213 1.04581 1.00047 1.16927 0.80291 0.97287 0.94893 1.91455 1.40063 1.83841 1.96304 0.89614 0.92612 0.93176 0.89994 0.85955 0.91648 0.88160 0.87886 0.84733 0.85027 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.81 16 2 O -0.38 -7.88 10.56 -39.24 -0.41 -8.29 16 3 C 0.49 11.54 6.13 36.01 0.22 11.76 16 4 O -0.50 -13.13 15.77 -18.75 -0.30 -13.43 16 5 C 0.16 3.59 5.14 -5.19 -0.03 3.57 16 6 N -0.42 -9.90 2.18 -116.09 -0.25 -10.15 16 7 C -0.33 -7.91 9.17 -14.93 -0.14 -8.05 16 8 H 0.10 2.31 6.03 -52.49 -0.32 1.99 16 9 C 0.04 0.91 4.90 -17.47 -0.09 0.82 16 10 N -0.87 -21.62 9.23 55.50 0.51 -21.10 16 11 Si 0.92 18.46 29.60 -169.99 -5.03 13.43 16 12 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 14 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 15 C 0.49 10.95 7.06 -10.99 -0.08 10.88 16 16 O -0.59 -13.59 11.39 5.54 0.06 -13.52 16 17 C -0.14 -2.51 5.23 -91.77 -0.48 -2.99 16 18 H 0.12 2.16 6.64 -51.93 -0.34 1.81 16 19 C -0.14 -2.26 9.57 -26.73 -0.26 -2.52 16 20 C -0.11 -1.72 5.80 -91.77 -0.53 -2.25 16 21 H 0.12 1.64 7.86 -51.93 -0.41 1.24 16 22 C -0.07 -1.16 4.37 -104.55 -0.46 -1.62 16 23 C 0.02 0.28 6.17 -39.60 -0.24 0.04 16 24 C -0.17 -2.77 10.03 -39.51 -0.40 -3.16 16 25 C 0.12 1.87 7.30 -39.43 -0.29 1.58 16 26 F -0.14 -2.20 17.27 2.25 0.04 -2.16 16 27 C -0.21 -3.18 10.01 -39.45 -0.39 -3.57 16 28 C 0.13 2.08 7.24 -39.43 -0.29 1.79 16 29 F -0.14 -2.22 16.61 2.25 0.04 -2.19 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.08 1.78 7.61 -51.93 -0.40 1.38 16 34 H 0.12 2.82 6.36 -51.93 -0.33 2.49 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.10 1.68 6.18 -51.92 -0.32 1.36 16 37 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.14 2.42 5.78 -52.48 -0.30 2.12 16 39 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 40 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -28.78 346.03 -6.59 -35.37 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.09 Total: 8.74 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -2.37 Total: 8.09 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.26 Total: -31.25 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.65 Total: -35.24 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.08 Total: -4.34 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.78 -6.59 -35.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120599879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.691 kcal (2) G-P(sol) polarization free energy of solvation -28.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds