Wall clock time and date at job start Tue Mar 31 2020 22:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 117.00014 * 2 1 4 4 O 1.20821 * 120.00432 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99758 * 179.97438 * 3 2 1 6 6 N 1.46510 * 109.46824 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99682 * 96.09688 * 6 5 3 8 8 H 1.08002 * 119.99390 * 162.80328 * 7 6 5 9 9 C 1.38950 * 120.00259 * 342.80612 * 7 6 5 10 10 N 1.31402 * 119.99809 * 339.57223 * 9 7 6 11 11 Si 1.86804 * 119.99742 * 159.29486 * 9 7 6 12 12 H 1.48505 * 109.46848 * 90.00250 * 11 9 7 13 13 H 1.48498 * 109.46948 * 209.99780 * 11 9 7 14 14 H 1.48501 * 109.47235 * 330.00127 * 11 9 7 15 15 C 1.34771 * 119.99925 * 276.09843 * 6 5 3 16 16 O 1.21295 * 120.00089 * 359.97438 * 15 6 5 17 17 C 1.50698 * 120.00092 * 180.02562 * 15 6 5 18 18 H 1.08999 * 115.54865 * 34.32543 * 17 15 6 19 19 C 1.52999 * 117.50023 * 248.62032 * 17 15 6 20 20 C 1.52997 * 60.00082 * 252.50725 * 19 17 15 21 21 H 1.09003 * 117.51903 * 252.51572 * 20 19 17 22 22 C 1.50704 * 117.49903 * 107.48593 * 20 19 17 23 23 C 1.38227 * 119.98824 * 351.38132 * 22 20 19 24 24 C 1.38185 * 120.05326 * 179.97438 * 23 22 20 25 25 C 1.38497 * 120.02069 * 0.02562 * 24 23 22 26 26 F 1.35103 * 120.01122 * 179.97438 * 25 24 23 27 27 C 1.38399 * 119.97912 * 0.02562 * 25 24 23 28 28 C 1.38445 * 119.94535 * 359.72284 * 27 25 24 29 29 F 1.35099 * 120.01059 * 180.27380 * 28 27 25 30 30 H 1.08995 * 109.47226 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47240 * 299.99711 * 1 2 3 32 32 H 1.09003 * 109.47237 * 59.99669 * 1 2 3 33 33 H 1.08997 * 109.47314 * 60.00708 * 5 3 2 34 34 H 1.09000 * 109.47431 * 300.00058 * 5 3 2 35 35 H 0.97008 * 120.00199 * 180.02562 * 10 9 7 36 36 H 1.09011 * 117.49462 * 0.02562 * 19 17 15 37 37 H 1.08993 * 117.50185 * 145.01561 * 19 17 15 38 38 H 1.08004 * 119.97172 * 359.97135 * 23 22 20 39 39 H 1.07995 * 119.99083 * 180.02562 * 24 23 22 40 40 H 1.07996 * 120.03027 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.2966 3.3010 1.1820 8 1 4.8583 4.2234 1.1738 9 6 3.8930 2.7440 2.3893 10 7 2.9016 1.8820 2.4163 11 14 4.7649 3.2147 3.9728 12 1 4.0925 4.3931 4.5766 13 1 4.7142 2.0749 4.9234 14 1 6.1810 3.5502 3.6773 15 6 4.0543 3.3614 -1.1593 16 8 3.7762 2.8115 -2.2041 17 6 4.4821 4.8063 -1.1589 18 1 5.2269 5.0759 -0.4101 19 6 3.4275 5.8555 -1.5165 20 6 4.5447 5.5250 -2.5081 21 1 5.3307 6.2674 -2.6470 22 6 4.1738 4.7337 -3.7359 23 6 2.9109 4.1829 -3.8474 24 6 2.5692 3.4575 -4.9728 25 6 3.4922 3.2810 -5.9901 26 9 3.1581 2.5713 -7.0901 27 6 4.7574 3.8311 -5.8791 28 6 5.0968 4.5621 -4.7534 29 9 6.3296 5.1042 -4.6462 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 3.9564 0.7806 -0.8892 34 1 3.9557 0.7808 0.8908 35 1 2.6195 1.4933 3.2592 36 1 2.4240 5.5005 -1.7516 37 1 3.4781 6.8155 -1.0028 38 1 2.1906 4.3197 -3.0543 39 1 1.5821 3.0280 -5.0591 40 1 5.4777 3.6943 -6.6721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120599879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:47 Heat of formation + Delta-G solvation = -144.196040 kcal Electronic energy + Delta-G solvation = -30431.666677 eV Core-core repulsion = 25849.290720 eV Total energy + Delta-G solvation = -4582.375956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.95631 -49.91668 -41.52880 -40.81268 -39.43664 -37.60366 -36.83185 -36.37027 -33.45913 -31.73474 -31.23741 -30.32080 -27.98148 -26.79263 -25.11986 -24.54926 -23.75974 -22.09086 -21.58686 -20.85783 -19.39439 -18.65373 -18.53728 -18.36026 -17.87085 -17.24076 -17.05196 -16.88305 -16.74547 -16.47408 -16.26257 -16.15898 -15.73756 -15.57343 -15.44844 -15.01145 -14.86115 -14.33772 -14.16684 -13.98794 -13.72510 -13.42281 -13.28925 -13.04677 -12.94068 -12.85555 -12.53624 -12.46365 -12.35466 -12.21640 -12.06627 -11.55976 -11.50820 -11.46152 -11.27501 -10.90408 -10.50897 -9.87321 -9.67202 -9.14793 -8.35053 -5.88910 0.04040 0.19630 1.41866 1.51589 1.62306 1.68539 1.80728 2.13965 2.35103 2.48852 2.79936 2.95224 3.05984 3.22130 3.51993 3.60776 3.70276 3.96275 3.98963 4.06334 4.16996 4.26384 4.32617 4.35419 4.40507 4.41636 4.60088 4.70246 4.76648 4.82467 4.89118 4.92125 4.97160 5.08299 5.12488 5.21818 5.48102 5.49215 5.65899 5.76170 5.89474 6.35522 7.11227 7.23950 7.53739 7.93553 8.71779 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.004515 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.712375 B = 6200.690179 C = 7828.847259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.380 6.380 3 C 0.488 3.512 4 O -0.533 6.533 5 C 0.156 3.844 6 N -0.436 5.436 7 C -0.346 4.346 8 H 0.117 0.883 9 C -0.004 4.004 10 N -0.898 5.898 11 Si 0.990 3.010 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.257 1.257 15 C 0.484 3.516 16 O -0.602 6.602 17 C -0.160 4.160 18 H 0.134 0.866 19 C -0.130 4.130 20 C -0.093 4.093 21 H 0.142 0.858 22 C -0.081 4.081 23 C 0.004 3.996 24 C -0.175 4.175 25 C 0.114 3.886 26 F -0.139 7.139 27 C -0.200 4.200 28 C 0.119 3.881 29 F -0.135 7.135 30 H 0.131 0.869 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.270 0.730 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.143 0.857 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 3.210 -7.378 8.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.297 6.297 3 C 0.331 3.669 4 O -0.421 6.421 5 C 0.030 3.970 6 N -0.154 5.154 7 C -0.473 4.473 8 H 0.134 0.866 9 C -0.205 4.205 10 N -0.537 5.537 11 Si 0.814 3.186 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.181 1.181 15 C 0.275 3.725 16 O -0.489 6.489 17 C -0.181 4.181 18 H 0.152 0.848 19 C -0.167 4.167 20 C -0.111 4.111 21 H 0.160 0.840 22 C -0.082 4.082 23 C -0.014 4.014 24 C -0.194 4.194 25 C 0.095 3.905 26 F -0.117 7.117 27 C -0.219 4.219 28 C 0.100 3.900 29 F -0.113 7.113 30 H 0.149 0.851 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.153 0.847 38 H 0.139 0.861 39 H 0.160 0.840 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.669 3.087 -7.753 8.372 hybrid contribution -0.110 -0.234 1.107 1.137 sum 0.559 2.852 -6.646 7.254 Atomic orbital electron populations 1.23267 0.76238 1.04739 1.01185 1.86428 1.24085 1.34078 1.85072 1.24032 0.92530 0.80732 0.69592 1.90467 1.67252 1.37487 1.46883 1.20461 0.87174 0.85978 1.03391 1.43594 1.56994 1.08083 1.06703 1.20013 1.34170 1.10680 0.82441 0.86562 1.26018 0.95123 0.97032 1.02358 1.69934 1.24046 1.31498 1.28266 0.84973 0.79147 0.77420 0.77024 1.20590 1.21088 1.18095 1.19953 0.81202 0.88212 0.83150 1.90546 1.56171 1.70519 1.31633 1.22133 1.05178 0.91167 0.99614 0.84846 1.23103 0.93791 0.99410 1.00401 1.21061 1.02912 1.00624 0.86515 0.84021 1.19103 0.93761 1.00924 0.94444 1.20452 0.95129 0.91559 0.94305 1.21138 1.00951 1.03284 0.94043 1.17227 0.93712 0.95205 0.84364 1.91476 1.92806 1.76147 1.51317 1.20930 0.97392 1.03378 1.00240 1.16995 0.80340 0.97587 0.95117 1.91461 1.39752 1.83805 1.96313 0.85060 0.93655 0.92987 0.89528 0.86566 0.92053 0.89624 0.84697 0.86089 0.83962 0.82039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 10.56 113.37 1.20 2.49 16 2 O -0.38 -15.98 10.56 -51.36 -0.54 -16.52 16 3 C 0.49 23.64 6.13 71.24 0.44 24.07 16 4 O -0.53 -28.71 15.77 21.98 0.35 -28.36 16 5 C 0.16 7.32 5.14 85.63 0.44 7.76 16 6 N -0.44 -20.80 2.18 -639.57 -1.39 -22.20 16 7 C -0.35 -16.36 9.17 84.04 0.77 -15.59 16 8 H 0.12 5.05 6.03 -2.91 -0.02 5.03 16 9 C 0.00 -0.18 4.90 84.93 0.42 0.23 16 10 N -0.90 -45.38 9.23 21.66 0.20 -45.18 16 11 Si 0.99 37.65 29.60 68.60 2.03 39.68 16 12 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 13 H -0.29 -10.92 7.11 99.48 0.71 -10.21 16 14 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 15 C 0.48 21.66 7.06 87.66 0.62 22.28 16 16 O -0.60 -28.14 11.39 -3.08 -0.04 -28.17 16 17 C -0.16 -5.77 5.23 -11.54 -0.06 -5.83 16 18 H 0.13 4.47 6.64 -2.39 -0.02 4.46 16 19 C -0.13 -3.93 9.57 30.59 0.29 -3.64 16 20 C -0.09 -2.83 5.80 -11.54 -0.07 -2.89 16 21 H 0.14 3.58 7.86 -2.39 -0.02 3.56 16 22 C -0.08 -2.70 4.37 -19.81 -0.09 -2.79 16 23 C 0.00 0.13 6.17 22.25 0.14 0.27 16 24 C -0.18 -5.62 10.03 22.32 0.22 -5.39 16 25 C 0.11 3.49 7.30 22.37 0.16 3.65 16 26 F -0.14 -4.07 17.27 44.97 0.78 -3.29 16 27 C -0.20 -5.81 10.01 22.36 0.22 -5.59 16 28 C 0.12 3.74 7.24 22.37 0.16 3.91 16 29 F -0.13 -4.05 16.61 44.97 0.75 -3.31 16 30 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.04 1.58 8.13 -2.39 -0.02 1.56 16 32 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 33 H 0.09 3.86 7.61 -2.39 -0.02 3.84 16 34 H 0.12 5.53 6.36 -2.39 -0.02 5.51 16 35 H 0.27 13.14 8.31 -92.70 -0.77 12.37 16 36 H 0.09 2.87 6.18 -2.38 -0.01 2.86 16 37 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.12 4.48 5.78 -2.91 -0.02 4.46 16 39 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 40 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -61.78 346.03 8.10 -53.68 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 1.11 Total: 30.73 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 4.87 Total: 22.95 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -1.19 Total: -67.38 kcal Atomic # 8 Polarization: -72.83 SS G_CDS: -0.23 Total: -73.06 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 1.52 Total: -6.59 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -61.78 8.10 -53.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120599879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.518 kcal (2) G-P(sol) polarization free energy of solvation -61.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds