Wall clock time and date at job start Tue Mar 31 2020 22:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00165 * 2 1 4 4 O 1.20826 * 119.99636 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00145 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47260 * 179.97438 * 5 3 2 7 7 C 1.37090 * 120.00271 * 264.07275 * 6 5 3 8 8 H 1.07999 * 120.00060 * 196.80392 * 7 6 5 9 9 C 1.38950 * 120.00082 * 16.80838 * 7 6 5 10 10 N 1.31414 * 119.99544 * 20.60338 * 9 7 6 11 11 Si 1.86795 * 120.00039 * 200.60519 * 9 7 6 12 12 H 1.48503 * 109.46918 * 90.00071 * 11 9 7 13 13 H 1.48506 * 109.47165 * 209.99575 * 11 9 7 14 14 H 1.48501 * 109.47449 * 329.99886 * 11 9 7 15 15 C 1.34787 * 119.99508 * 84.07553 * 6 5 3 16 16 O 1.21291 * 119.99947 * 0.02562 * 15 6 5 17 17 C 1.50695 * 119.99557 * 180.02562 * 15 6 5 18 18 H 1.09006 * 115.56612 * 325.68443 * 17 15 6 19 19 C 1.52994 * 117.50087 * 111.37868 * 17 15 6 20 20 C 1.52999 * 60.00296 * 107.48937 * 19 17 15 21 21 H 1.09001 * 117.49417 * 252.49075 * 20 19 17 22 22 C 1.50695 * 117.50180 * 107.48928 * 20 19 17 23 23 C 1.38229 * 119.98727 * 351.39470 * 22 20 19 24 24 C 1.38192 * 120.05174 * 179.97438 * 23 22 20 25 25 C 1.38494 * 120.02005 * 0.27559 * 24 23 22 26 26 F 1.35105 * 120.00614 * 179.72704 * 25 24 23 27 27 C 1.38400 * 119.97857 * 359.46963 * 25 24 23 28 28 C 1.38438 * 119.94404 * 0.50603 * 27 25 24 29 29 F 1.35103 * 120.00531 * 179.74559 * 28 27 25 30 30 H 1.09001 * 109.47076 * 59.99661 * 1 2 3 31 31 H 1.08997 * 109.47093 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46736 * 300.00006 * 1 2 3 33 33 H 1.09002 * 109.47361 * 59.99590 * 5 3 2 34 34 H 1.08999 * 109.47193 * 299.99660 * 5 3 2 35 35 H 0.97008 * 119.99440 * 180.02562 * 10 9 7 36 36 H 1.08998 * 117.50113 * 359.97438 * 19 17 15 37 37 H 1.09005 * 117.49941 * 214.98020 * 19 17 15 38 38 H 1.07999 * 119.97639 * 359.97438 * 23 22 20 39 39 H 1.07993 * 119.98718 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.02660 * 180.27768 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2933 3.3020 -1.1822 8 1 4.8496 4.2277 -1.1745 9 6 3.8932 2.7419 -2.3892 10 7 2.9044 1.8767 -2.4163 11 14 4.7608 3.2187 -3.9733 12 1 5.9018 2.2980 -4.2091 13 1 3.8069 3.1254 -5.1076 14 1 5.2635 4.6117 -3.8625 15 6 4.0577 3.3603 1.1598 16 8 3.7826 2.8096 2.2049 17 6 4.4845 4.8056 1.1593 18 1 5.2264 5.0767 0.4082 19 6 3.4303 5.8536 1.5213 20 6 4.5510 5.5231 2.5090 21 1 4.2859 4.9501 3.3975 22 6 5.6373 6.5503 2.6982 23 6 5.6962 7.6543 1.8684 24 6 6.6915 8.5974 2.0410 25 6 7.6344 8.4344 3.0422 26 9 8.6105 9.3538 3.2072 27 6 7.5732 7.3322 3.8770 28 6 6.5754 6.3884 3.7034 29 9 6.5176 5.3093 4.5143 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9558 0.7808 -0.8908 34 1 3.9564 0.7806 0.8892 35 1 2.6253 1.4854 -3.2590 36 1 2.4279 5.4979 1.7595 37 1 3.4786 6.8142 1.0083 38 1 4.9640 7.7799 1.0846 39 1 6.7363 9.4597 1.3924 40 1 8.3055 7.2066 4.6608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120600013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:50 Heat of formation + Delta-G solvation = -141.917959 kcal Electronic energy + Delta-G solvation = -29295.300121 eV Core-core repulsion = 24713.022949 eV Total energy + Delta-G solvation = -4582.277171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.10494 -48.90872 -39.80978 -39.26430 -38.33105 -36.18365 -35.17648 -34.60031 -31.62380 -30.93774 -30.27314 -28.65268 -26.43832 -25.05275 -24.10926 -23.26661 -22.58483 -20.68794 -20.05596 -19.15407 -18.33949 -17.47987 -16.89435 -16.72952 -16.54671 -16.00052 -15.86194 -15.52837 -15.47108 -15.29952 -15.13195 -14.58441 -14.47088 -14.38239 -14.24054 -13.57221 -13.27606 -13.03374 -12.57072 -12.50428 -12.30528 -12.20766 -11.99725 -11.57836 -11.46039 -11.36507 -11.30572 -11.21349 -10.83509 -10.65261 -10.48930 -10.23325 -10.00503 -9.83738 -9.61153 -9.15414 -9.05532 -8.71621 -8.41082 -8.01784 -6.55527 -4.04364 0.84559 0.91325 3.02598 3.14641 3.17105 3.18885 3.38251 3.65912 3.78708 3.83260 4.02983 4.31013 4.35566 4.38304 4.54357 4.73681 4.81733 4.91817 5.07687 5.26633 5.40131 5.50886 5.68580 5.69878 5.76472 5.81051 5.86713 5.92303 5.93160 5.95424 6.08727 6.14349 6.22430 6.40616 6.50133 6.56767 6.64094 6.68240 7.29388 7.42470 7.54070 8.17320 8.92084 9.07650 9.29872 9.70065 10.52045 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013677 B = 0.003356 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.719779 B = 8340.443928 C = 9715.537346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.485 3.515 4 O -0.500 6.500 5 C 0.156 3.844 6 N -0.423 5.423 7 C -0.333 4.333 8 H 0.105 0.895 9 C 0.037 3.963 10 N -0.869 5.869 11 Si 0.926 3.074 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.496 3.504 16 O -0.599 6.599 17 C -0.128 4.128 18 H 0.122 0.878 19 C -0.138 4.138 20 C -0.111 4.111 21 H 0.127 0.873 22 C -0.079 4.079 23 C -0.065 4.065 24 C -0.159 4.159 25 C 0.116 3.884 26 F -0.136 7.136 27 C -0.191 4.191 28 C 0.136 3.864 29 F -0.125 7.125 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.273 0.727 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 7.259 4.853 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.327 3.673 4 O -0.384 6.384 5 C 0.031 3.969 6 N -0.140 5.140 7 C -0.460 4.460 8 H 0.123 0.877 9 C -0.168 4.168 10 N -0.507 5.507 11 Si 0.753 3.247 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.194 1.194 15 C 0.285 3.715 16 O -0.484 6.484 17 C -0.149 4.149 18 H 0.139 0.861 19 C -0.175 4.175 20 C -0.129 4.129 21 H 0.145 0.855 22 C -0.081 4.081 23 C -0.083 4.083 24 C -0.178 4.178 25 C 0.096 3.904 26 F -0.115 7.115 27 C -0.210 4.210 28 C 0.117 3.883 29 F -0.103 7.103 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.046 7.154 5.224 9.739 hybrid contribution 0.223 0.227 -0.968 1.018 sum 4.268 7.381 4.256 9.530 Atomic orbital electron populations 1.22932 0.78695 1.01820 1.01627 1.86455 1.21689 1.35473 1.85688 1.23924 0.92247 0.80579 0.70587 1.90508 1.66483 1.36368 1.45063 1.20496 0.87310 0.85464 1.03676 1.43311 1.56691 1.07966 1.06058 1.19654 1.34411 1.09845 0.82128 0.87702 1.25217 0.94831 0.97075 0.99628 1.69841 1.22792 1.30090 1.27993 0.85940 0.79004 0.79134 0.80668 1.20154 1.20998 1.19392 1.19185 0.81925 0.86651 0.83752 1.90548 1.55791 1.69954 1.32157 1.22131 1.03021 0.92856 0.96892 0.86054 1.22984 0.95006 0.98818 1.00718 1.20970 0.96723 0.99056 0.96170 0.85465 1.19397 0.96353 0.96773 0.95532 1.20894 0.97451 0.91707 0.98268 1.21161 0.95633 1.01841 0.99151 1.17265 0.88128 0.87910 0.97075 1.91512 1.60449 1.64504 1.95000 1.20973 1.01561 0.95121 1.03390 1.17096 0.95587 0.84840 0.90790 1.91553 1.95737 1.52205 1.70790 0.92606 0.89598 0.93167 0.85785 0.89989 0.91656 0.87810 0.88150 0.83512 0.84067 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.07 10.57 -39.26 -0.41 -8.48 16 3 C 0.49 11.94 6.13 36.00 0.22 12.16 16 4 O -0.50 -13.69 15.78 -18.75 -0.30 -13.98 16 5 C 0.16 3.70 5.14 -5.19 -0.03 3.68 16 6 N -0.42 -10.36 2.18 -116.10 -0.25 -10.62 16 7 C -0.33 -8.03 9.18 -14.94 -0.14 -8.17 16 8 H 0.11 2.35 6.03 -52.49 -0.32 2.04 16 9 C 0.04 0.89 4.90 -17.47 -0.09 0.81 16 10 N -0.87 -21.93 9.23 55.50 0.51 -21.42 16 11 Si 0.93 18.64 29.60 -169.99 -5.03 13.60 16 12 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 13 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 14 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 15 C 0.50 11.80 7.21 -10.98 -0.08 11.73 16 16 O -0.60 -15.57 15.94 5.55 0.09 -15.48 16 17 C -0.13 -2.45 4.86 -91.78 -0.45 -2.90 16 18 H 0.12 2.18 6.64 -51.93 -0.34 1.84 16 19 C -0.14 -2.25 9.56 -26.73 -0.26 -2.51 16 20 C -0.11 -1.84 5.31 -91.77 -0.49 -2.32 16 21 H 0.13 2.36 7.39 -51.93 -0.38 1.98 16 22 C -0.08 -1.11 5.62 -104.55 -0.59 -1.70 16 23 C -0.07 -0.75 9.29 -39.60 -0.37 -1.12 16 24 C -0.16 -1.65 10.03 -39.50 -0.40 -2.05 16 25 C 0.12 1.31 7.30 -39.43 -0.29 1.02 16 26 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 27 C -0.19 -2.24 10.01 -39.45 -0.39 -2.64 16 28 C 0.14 1.89 7.24 -39.43 -0.29 1.60 16 29 F -0.12 -1.92 16.61 2.25 0.04 -1.88 16 30 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.12 2.91 6.35 -51.93 -0.33 2.58 16 34 H 0.08 1.83 7.61 -51.93 -0.40 1.43 16 35 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 37 H 0.10 1.31 6.18 -51.93 -0.32 0.99 16 38 H 0.15 1.46 6.02 -52.49 -0.32 1.14 16 39 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -30.71 353.99 -6.61 -37.32 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.08 Total: 7.71 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -2.55 Total: 9.41 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.26 Total: -32.04 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.62 Total: -37.95 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.08 Total: -3.39 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.71 -6.61 -37.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120600013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.596 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds