Wall clock time and date at job start Tue Mar 31 2020 22:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00165 * 2 1 4 4 O 1.20826 * 119.99636 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00145 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47260 * 179.97438 * 5 3 2 7 7 C 1.37090 * 120.00271 * 264.07275 * 6 5 3 8 8 H 1.07999 * 120.00060 * 196.80392 * 7 6 5 9 9 C 1.38950 * 120.00082 * 16.80838 * 7 6 5 10 10 N 1.31414 * 119.99544 * 20.60338 * 9 7 6 11 11 Si 1.86795 * 120.00039 * 200.60519 * 9 7 6 12 12 H 1.48503 * 109.46918 * 90.00071 * 11 9 7 13 13 H 1.48506 * 109.47165 * 209.99575 * 11 9 7 14 14 H 1.48501 * 109.47449 * 329.99886 * 11 9 7 15 15 C 1.34787 * 119.99508 * 84.07553 * 6 5 3 16 16 O 1.21291 * 119.99947 * 0.02562 * 15 6 5 17 17 C 1.50695 * 119.99557 * 180.02562 * 15 6 5 18 18 H 1.09006 * 115.56612 * 325.68443 * 17 15 6 19 19 C 1.52994 * 117.50087 * 111.37868 * 17 15 6 20 20 C 1.52999 * 60.00296 * 107.48937 * 19 17 15 21 21 H 1.09001 * 117.49417 * 252.49075 * 20 19 17 22 22 C 1.50695 * 117.50180 * 107.48928 * 20 19 17 23 23 C 1.38229 * 119.98727 * 351.39470 * 22 20 19 24 24 C 1.38192 * 120.05174 * 179.97438 * 23 22 20 25 25 C 1.38494 * 120.02005 * 0.27559 * 24 23 22 26 26 F 1.35105 * 120.00614 * 179.72704 * 25 24 23 27 27 C 1.38400 * 119.97857 * 359.46963 * 25 24 23 28 28 C 1.38438 * 119.94404 * 0.50603 * 27 25 24 29 29 F 1.35103 * 120.00531 * 179.74559 * 28 27 25 30 30 H 1.09001 * 109.47076 * 59.99661 * 1 2 3 31 31 H 1.08997 * 109.47093 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46736 * 300.00006 * 1 2 3 33 33 H 1.09002 * 109.47361 * 59.99590 * 5 3 2 34 34 H 1.08999 * 109.47193 * 299.99660 * 5 3 2 35 35 H 0.97008 * 119.99440 * 180.02562 * 10 9 7 36 36 H 1.08998 * 117.50113 * 359.97438 * 19 17 15 37 37 H 1.09005 * 117.49941 * 214.98020 * 19 17 15 38 38 H 1.07999 * 119.97639 * 359.97438 * 23 22 20 39 39 H 1.07993 * 119.98718 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.02660 * 180.27768 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2933 3.3020 -1.1822 8 1 4.8496 4.2277 -1.1745 9 6 3.8932 2.7419 -2.3892 10 7 2.9044 1.8767 -2.4163 11 14 4.7608 3.2187 -3.9733 12 1 5.9018 2.2980 -4.2091 13 1 3.8069 3.1254 -5.1076 14 1 5.2635 4.6117 -3.8625 15 6 4.0577 3.3603 1.1598 16 8 3.7826 2.8096 2.2049 17 6 4.4845 4.8056 1.1593 18 1 5.2264 5.0767 0.4082 19 6 3.4303 5.8536 1.5213 20 6 4.5510 5.5231 2.5090 21 1 4.2859 4.9501 3.3975 22 6 5.6373 6.5503 2.6982 23 6 5.6962 7.6543 1.8684 24 6 6.6915 8.5974 2.0410 25 6 7.6344 8.4344 3.0422 26 9 8.6105 9.3538 3.2072 27 6 7.5732 7.3322 3.8770 28 6 6.5754 6.3884 3.7034 29 9 6.5176 5.3093 4.5143 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9558 0.7808 -0.8908 34 1 3.9564 0.7806 0.8892 35 1 2.6253 1.4854 -3.2590 36 1 2.4279 5.4979 1.7595 37 1 3.4786 6.8142 1.0083 38 1 4.9640 7.7799 1.0846 39 1 6.7363 9.4597 1.3924 40 1 8.3055 7.2066 4.6608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120600013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:50 Heat of formation + Delta-G solvation = -157.463953 kcal Electronic energy + Delta-G solvation = -29295.974245 eV Core-core repulsion = 24713.022949 eV Total energy + Delta-G solvation = -4582.951296 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.01883 -49.98378 -41.47279 -40.75006 -39.80194 -37.68694 -36.91198 -36.47469 -33.48502 -31.86550 -31.36337 -30.36463 -28.00170 -26.85979 -25.17146 -24.66363 -23.74455 -22.12039 -21.58616 -20.93474 -19.34169 -18.93341 -18.53188 -18.34538 -18.00745 -17.27254 -17.12009 -16.98430 -16.81850 -16.58957 -16.33413 -16.21457 -16.01850 -15.53102 -15.41966 -15.09891 -14.90220 -14.34437 -14.20087 -14.00676 -13.61231 -13.46780 -13.26156 -13.11303 -13.08187 -12.87028 -12.58488 -12.51597 -12.45604 -12.28633 -12.04408 -11.59035 -11.55278 -11.54179 -11.37653 -10.94325 -10.53748 -10.05597 -9.90551 -9.48362 -8.36961 -5.92291 -0.12243 0.01013 1.40940 1.52126 1.62109 1.65675 1.75993 2.08494 2.32485 2.34417 2.77168 2.84679 2.96335 3.19520 3.41374 3.50786 3.60903 3.87395 3.91886 4.02211 4.12837 4.21327 4.25790 4.33729 4.34794 4.39841 4.54943 4.66993 4.68831 4.75299 4.80717 4.87331 4.96072 5.00675 5.10331 5.11169 5.34812 5.47012 5.61148 5.70660 5.75885 6.32820 7.07455 7.19197 7.46476 7.86798 8.70756 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013677 B = 0.003356 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.719779 B = 8340.443928 C = 9715.537346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.487 3.513 4 O -0.536 6.536 5 C 0.152 3.848 6 N -0.433 5.433 7 C -0.349 4.349 8 H 0.121 0.879 9 C -0.004 4.004 10 N -0.899 5.899 11 Si 0.996 3.004 12 H -0.272 1.272 13 H -0.292 1.292 14 H -0.254 1.254 15 C 0.480 3.520 16 O -0.634 6.634 17 C -0.150 4.150 18 H 0.136 0.864 19 C -0.122 4.122 20 C -0.094 4.094 21 H 0.098 0.902 22 C -0.094 4.094 23 C -0.058 4.058 24 C -0.144 4.144 25 C 0.117 3.883 26 F -0.134 7.134 27 C -0.187 4.187 28 C 0.114 3.886 29 F -0.143 7.143 30 H 0.046 0.954 31 H 0.134 0.866 32 H 0.050 0.950 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.271 0.729 36 H 0.081 0.919 37 H 0.143 0.857 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.527 9.453 3.540 11.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.330 3.670 4 O -0.423 6.423 5 C 0.026 3.974 6 N -0.150 5.150 7 C -0.475 4.475 8 H 0.138 0.862 9 C -0.206 4.206 10 N -0.537 5.537 11 Si 0.819 3.181 12 H -0.198 1.198 13 H -0.218 1.218 14 H -0.178 1.178 15 C 0.271 3.729 16 O -0.523 6.523 17 C -0.170 4.170 18 H 0.154 0.846 19 C -0.159 4.159 20 C -0.112 4.112 21 H 0.116 0.884 22 C -0.095 4.095 23 C -0.076 4.076 24 C -0.162 4.162 25 C 0.097 3.903 26 F -0.113 7.113 27 C -0.207 4.207 28 C 0.095 3.905 29 F -0.121 7.121 30 H 0.065 0.935 31 H 0.152 0.848 32 H 0.068 0.932 33 H 0.141 0.859 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.161 0.839 38 H 0.186 0.814 39 H 0.192 0.808 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.096 9.339 3.917 11.337 hybrid contribution -0.148 -0.498 -0.498 0.720 sum 4.948 8.841 3.419 10.693 Atomic orbital electron populations 1.23297 0.76140 1.04888 1.01205 1.86423 1.24169 1.33796 1.85027 1.24029 0.92555 0.80818 0.69587 1.90471 1.67287 1.37628 1.46957 1.20543 0.87276 0.85915 1.03660 1.43571 1.56617 1.08193 1.06646 1.20098 1.34689 1.10619 0.82140 0.86170 1.26106 0.94985 0.96932 1.02532 1.69954 1.24009 1.31249 1.28514 0.84876 0.77505 0.79548 0.76125 1.19750 1.21835 1.17777 1.20039 0.81320 0.88489 0.83064 1.90503 1.57360 1.71198 1.33225 1.22080 1.05069 0.90486 0.99384 0.84620 1.23103 0.93371 0.99344 1.00127 1.20743 0.97734 0.98797 0.93973 0.88427 1.19295 0.96009 0.97274 0.96965 1.21088 0.98006 0.90636 0.97836 1.21475 0.94120 1.02094 0.98553 1.17383 0.88261 0.87567 0.97068 1.91526 1.60429 1.64317 1.94988 1.21088 1.01084 0.94696 1.03813 1.17346 0.96758 0.85170 0.91250 1.91505 1.95952 1.53261 1.71421 0.93503 0.84773 0.93159 0.85906 0.89594 0.91877 0.90077 0.83906 0.81420 0.80847 0.82137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 10.56 113.37 1.20 2.50 16 2 O -0.38 -16.38 10.57 -51.41 -0.54 -16.92 16 3 C 0.49 24.65 6.13 71.23 0.44 25.08 16 4 O -0.54 -30.27 15.78 21.96 0.35 -29.92 16 5 C 0.15 7.45 5.14 85.63 0.44 7.89 16 6 N -0.43 -21.75 2.18 -639.60 -1.39 -23.14 16 7 C -0.35 -16.77 9.18 84.04 0.77 -16.00 16 8 H 0.12 5.24 6.03 -2.91 -0.02 5.22 16 9 C 0.00 -0.19 4.90 84.93 0.42 0.23 16 10 N -0.90 -45.81 9.23 21.66 0.20 -45.61 16 11 Si 1.00 37.38 29.60 68.60 2.03 39.41 16 12 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 13 H -0.29 -11.27 7.11 99.48 0.71 -10.56 16 14 H -0.25 -8.85 7.11 99.48 0.71 -8.15 16 15 C 0.48 23.59 7.21 87.65 0.63 24.22 16 16 O -0.63 -34.63 15.94 -3.06 -0.05 -34.68 16 17 C -0.15 -5.72 4.86 -11.54 -0.06 -5.78 16 18 H 0.14 4.71 6.64 -2.38 -0.02 4.70 16 19 C -0.12 -3.90 9.56 30.59 0.29 -3.61 16 20 C -0.09 -3.13 5.31 -11.54 -0.06 -3.19 16 21 H 0.10 3.83 7.39 -2.39 -0.02 3.81 16 22 C -0.09 -2.51 5.62 -19.82 -0.11 -2.63 16 23 C -0.06 -1.14 9.29 22.26 0.21 -0.93 16 24 C -0.14 -2.40 10.03 22.32 0.22 -2.17 16 25 C 0.12 2.28 7.30 22.37 0.16 2.44 16 26 F -0.13 -2.62 17.27 44.97 0.78 -1.85 16 27 C -0.19 -4.08 10.01 22.36 0.22 -3.85 16 28 C 0.11 3.10 7.24 22.37 0.16 3.26 16 29 F -0.14 -4.55 16.61 44.97 0.75 -3.80 16 30 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 31 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 33 H 0.12 5.96 6.35 -2.39 -0.02 5.95 16 34 H 0.09 4.03 7.61 -2.39 -0.02 4.01 16 35 H 0.27 13.26 8.31 -92.70 -0.77 12.49 16 36 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.14 3.25 6.18 -2.38 -0.01 3.23 16 38 H 0.17 2.54 6.02 -2.91 -0.02 2.52 16 39 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -69.10 353.99 8.16 -60.94 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 1.11 Total: 28.11 kcal Atomic # 6 Polarization: 22.53 SS G_CDS: 4.94 Total: 27.46 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -1.19 Total: -68.75 kcal Atomic # 8 Polarization: -81.28 SS G_CDS: -0.25 Total: -81.53 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 1.52 Total: -5.65 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -69.10 8.16 -60.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120600013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.528 kcal (2) G-P(sol) polarization free energy of solvation -69.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds