Wall clock time and date at job start Tue Mar 31 2020 22:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34222 * 116.99983 * 2 1 4 4 O 1.20831 * 120.00151 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00279 * 179.97438 * 3 2 1 6 6 N 1.46490 * 109.47277 * 180.02562 * 5 3 2 7 7 C 1.37099 * 120.00285 * 270.00251 * 6 5 3 8 8 H 1.07999 * 120.00227 * 203.02510 * 7 6 5 9 9 C 1.38952 * 119.99940 * 23.02424 * 7 6 5 10 10 N 1.31406 * 119.99689 * 351.22900 * 9 7 6 11 11 Si 1.86800 * 120.00078 * 171.23583 * 9 7 6 12 12 H 1.48493 * 109.47024 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47472 * 119.99793 * 11 9 7 14 14 H 1.48503 * 109.46592 * 239.99965 * 11 9 7 15 15 C 1.34774 * 120.00100 * 90.00491 * 6 5 3 16 16 O 1.21294 * 119.99908 * 5.07102 * 15 6 5 17 17 C 1.50701 * 120.00172 * 185.07517 * 15 6 5 18 18 H 1.08993 * 115.56487 * 28.32683 * 17 15 6 19 19 C 1.53002 * 117.49993 * 242.63243 * 17 15 6 20 20 C 1.53001 * 60.00316 * 252.51257 * 19 17 15 21 21 H 1.08998 * 117.49987 * 107.50993 * 20 19 17 22 22 C 1.50696 * 117.49504 * 252.50896 * 20 19 17 23 23 C 1.38233 * 119.99229 * 8.63478 * 22 20 19 24 24 C 1.38179 * 120.05186 * 180.02562 * 23 22 20 25 25 C 1.38499 * 120.02439 * 359.94888 * 24 23 22 26 26 F 1.35102 * 120.00951 * 180.02562 * 25 24 23 27 27 C 1.38390 * 119.97484 * 0.02843 * 25 24 23 28 28 C 1.38438 * 119.95239 * 359.97438 * 27 25 24 29 29 F 1.35102 * 120.01411 * 179.72986 * 28 27 25 30 30 H 1.08999 * 109.47261 * 299.99516 * 1 2 3 31 31 H 1.08997 * 109.47067 * 59.99873 * 1 2 3 32 32 H 1.09005 * 109.46855 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46432 * 60.00228 * 5 3 2 34 34 H 1.08998 * 109.47329 * 300.00495 * 5 3 2 35 35 H 0.97007 * 119.99935 * 185.01204 * 10 9 7 36 36 H 1.08998 * 117.50050 * 145.01873 * 19 17 15 37 37 H 1.09001 * 117.51307 * 359.97438 * 19 17 15 38 38 H 1.07994 * 119.97015 * 0.02562 * 23 22 20 39 39 H 1.08000 * 119.99091 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.02362 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1764 3.3374 -1.1860 8 1 4.8151 4.2075 -1.2228 9 6 3.5520 2.8845 -2.3417 10 7 2.9170 1.7341 -2.3378 11 14 3.6155 3.9110 -3.9011 12 1 4.3856 5.1544 -3.6443 13 1 4.2762 3.1328 -4.9796 14 1 2.2344 4.2622 -4.3190 15 6 4.1724 3.3256 1.1685 16 8 4.0902 2.7208 2.2167 17 6 4.4877 4.7993 1.1715 18 1 4.0934 5.3663 0.3284 19 6 5.8395 5.2313 1.7432 20 6 4.5547 5.5046 2.5277 21 1 4.3709 4.9029 3.4178 22 6 4.0706 6.9301 2.5953 23 6 4.6747 7.9024 1.8204 24 6 4.2322 9.2100 1.8818 25 6 3.1820 9.5476 2.7193 26 9 2.7492 10.8261 2.7787 27 6 2.5762 8.5749 3.4952 28 6 3.0203 7.2652 3.4329 29 9 2.4334 6.3156 4.1939 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.9563 0.7806 -0.8892 34 1 3.9558 0.7809 0.8907 35 1 2.5437 1.3833 -3.1615 36 1 6.3346 6.0826 1.2760 37 1 6.5008 4.4499 2.1176 38 1 5.4931 7.6398 1.1665 39 1 4.7051 9.9690 1.2763 40 1 1.7569 8.8372 4.1482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120600175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:53 Heat of formation + Delta-G solvation = -141.306071 kcal Electronic energy + Delta-G solvation = -29487.185776 eV Core-core repulsion = 24904.935138 eV Total energy + Delta-G solvation = -4582.250638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.08117 -48.87469 -39.80185 -39.23875 -38.32649 -36.19600 -35.18682 -34.55306 -31.59588 -30.91676 -30.25626 -28.61360 -26.41357 -25.03805 -24.10911 -23.23322 -22.56882 -20.69020 -20.00360 -19.18845 -18.31684 -17.50795 -16.91141 -16.67445 -16.49608 -15.97281 -15.83764 -15.51391 -15.44141 -15.26899 -15.11662 -14.57518 -14.46512 -14.33807 -14.21104 -13.69314 -13.15251 -13.04798 -12.54816 -12.49753 -12.28719 -12.19320 -11.94441 -11.56477 -11.44223 -11.35011 -11.24894 -11.21591 -10.80987 -10.64633 -10.47604 -10.33818 -10.04065 -9.82401 -9.56601 -9.12742 -9.03821 -8.72737 -8.39542 -8.00881 -6.50145 -4.12421 0.86869 0.94109 3.00513 3.12251 3.17609 3.18844 3.42798 3.70951 3.79454 3.84599 4.04148 4.30800 4.38200 4.42318 4.56095 4.74743 4.80303 4.97361 5.09206 5.24521 5.38717 5.47320 5.70598 5.71673 5.78203 5.80473 5.87989 5.91169 5.95323 6.01015 6.10647 6.13431 6.29070 6.41413 6.50421 6.60417 6.70504 6.87073 7.26568 7.46412 7.59855 8.19595 8.91790 9.12112 9.29820 9.69150 10.51549 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.003681 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.326216 B = 7603.982512 C = 8523.182881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.490 3.510 4 O -0.514 6.514 5 C 0.154 3.846 6 N -0.427 5.427 7 C -0.323 4.323 8 H 0.105 0.895 9 C 0.042 3.958 10 N -0.883 5.883 11 Si 0.932 3.068 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.497 3.503 16 O -0.600 6.600 17 C -0.130 4.130 18 H 0.126 0.874 19 C -0.147 4.147 20 C -0.106 4.106 21 H 0.127 0.873 22 C -0.080 4.080 23 C -0.065 4.065 24 C -0.160 4.160 25 C 0.116 3.884 26 F -0.136 7.136 27 C -0.191 4.191 28 C 0.138 3.862 29 F -0.124 7.124 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.077 0.923 35 H 0.273 0.727 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 8.176 4.504 9.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.290 6.290 3 C 0.332 3.668 4 O -0.400 6.400 5 C 0.029 3.971 6 N -0.145 5.145 7 C -0.451 4.451 8 H 0.122 0.878 9 C -0.162 4.162 10 N -0.523 5.523 11 Si 0.759 3.241 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.286 3.714 16 O -0.486 6.486 17 C -0.151 4.151 18 H 0.144 0.856 19 C -0.184 4.184 20 C -0.125 4.125 21 H 0.145 0.855 22 C -0.082 4.082 23 C -0.083 4.083 24 C -0.178 4.178 25 C 0.097 3.903 26 F -0.115 7.115 27 C -0.210 4.210 28 C 0.118 3.882 29 F -0.103 7.103 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.157 0.843 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.350 8.090 4.887 9.739 hybrid contribution -0.781 0.603 -0.968 1.382 sum 1.569 8.693 3.919 9.664 Atomic orbital electron populations 1.22921 0.78917 1.01771 1.01496 1.86459 1.21457 1.35475 1.85624 1.23955 0.92350 0.80440 0.70049 1.90511 1.66715 1.36455 1.46287 1.20663 0.86985 0.85400 1.04094 1.43228 1.57587 1.08396 1.05247 1.19722 1.27572 1.12865 0.84899 0.87777 1.25317 0.94223 0.96326 1.00284 1.69610 1.36305 1.17888 1.28538 0.85783 0.78200 0.79688 0.80460 1.19190 1.20597 1.20597 1.19206 0.81631 0.87146 0.83396 1.90543 1.58113 1.68176 1.31741 1.22226 1.01199 0.95353 0.96324 0.85615 1.23043 0.90028 1.03011 1.02327 1.20925 1.02245 0.91473 0.97811 0.85475 1.19381 0.95763 0.95772 0.97236 1.20857 0.99174 0.90864 0.97374 1.21149 0.97847 0.97961 1.00885 1.17258 0.95859 0.78718 0.98479 1.91510 1.88972 1.35628 1.95346 1.20974 1.04221 0.91563 1.04276 1.17104 0.93233 0.85238 0.92603 1.91555 1.82548 1.63021 1.73134 0.93219 0.92804 0.89603 0.84322 0.90469 0.91564 0.88142 0.87847 0.83558 0.84065 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.37 -8.17 10.57 -39.24 -0.41 -8.58 16 3 C 0.49 12.25 5.92 36.01 0.21 12.46 16 4 O -0.51 -14.33 15.94 -18.75 -0.30 -14.63 16 5 C 0.15 3.70 5.29 -5.20 -0.03 3.67 16 6 N -0.43 -10.52 2.11 -116.10 -0.25 -10.77 16 7 C -0.32 -7.81 8.82 -14.93 -0.13 -7.94 16 8 H 0.10 2.32 6.67 -52.49 -0.35 1.97 16 9 C 0.04 1.01 5.41 -17.47 -0.09 0.92 16 10 N -0.88 -22.21 8.21 55.50 0.46 -21.76 16 11 Si 0.93 19.14 29.57 -169.99 -5.03 14.11 16 12 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 13 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 15 C 0.50 11.83 7.40 -10.99 -0.08 11.75 16 16 O -0.60 -15.51 15.83 5.55 0.09 -15.43 16 17 C -0.13 -2.49 4.68 -91.77 -0.43 -2.92 16 18 H 0.13 2.41 7.12 -51.93 -0.37 2.04 16 19 C -0.15 -2.17 9.56 -26.73 -0.26 -2.42 16 20 C -0.11 -1.76 5.31 -91.77 -0.49 -2.25 16 21 H 0.13 2.36 7.40 -51.93 -0.38 1.97 16 22 C -0.08 -1.17 5.62 -104.55 -0.59 -1.75 16 23 C -0.06 -0.76 9.29 -39.60 -0.37 -1.13 16 24 C -0.16 -1.73 10.02 -39.51 -0.40 -2.12 16 25 C 0.12 1.39 7.30 -39.43 -0.29 1.10 16 26 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 27 C -0.19 -2.40 10.01 -39.45 -0.39 -2.80 16 28 C 0.14 2.03 7.24 -39.43 -0.29 1.75 16 29 F -0.12 -2.06 16.61 2.25 0.04 -2.02 16 30 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 31 H 0.05 0.99 8.13 -51.93 -0.42 0.56 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.14 3.33 6.29 -51.93 -0.33 3.00 16 34 H 0.08 1.77 7.36 -51.93 -0.38 1.39 16 35 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 36 H 0.10 1.15 6.18 -51.93 -0.32 0.83 16 37 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 38 H 0.15 1.42 6.02 -52.49 -0.32 1.11 16 39 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 353.86 15.07 5.33 5.33 Total: -1.00 -30.85 353.86 -6.70 -37.55 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.12 Total: 7.64 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: -2.55 Total: 10.14 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.21 Total: -32.52 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.63 Total: -38.65 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.08 Total: -3.60 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.85 -6.70 -37.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120600175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.761 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds