Wall clock time and date at job start Tue Mar 31 2020 22:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34222 * 116.99983 * 2 1 4 4 O 1.20831 * 120.00151 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00279 * 179.97438 * 3 2 1 6 6 N 1.46490 * 109.47277 * 180.02562 * 5 3 2 7 7 C 1.37099 * 120.00285 * 270.00251 * 6 5 3 8 8 H 1.07999 * 120.00227 * 203.02510 * 7 6 5 9 9 C 1.38952 * 119.99940 * 23.02424 * 7 6 5 10 10 N 1.31406 * 119.99689 * 351.22900 * 9 7 6 11 11 Si 1.86800 * 120.00078 * 171.23583 * 9 7 6 12 12 H 1.48493 * 109.47024 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47472 * 119.99793 * 11 9 7 14 14 H 1.48503 * 109.46592 * 239.99965 * 11 9 7 15 15 C 1.34774 * 120.00100 * 90.00491 * 6 5 3 16 16 O 1.21294 * 119.99908 * 5.07102 * 15 6 5 17 17 C 1.50701 * 120.00172 * 185.07517 * 15 6 5 18 18 H 1.08993 * 115.56487 * 28.32683 * 17 15 6 19 19 C 1.53002 * 117.49993 * 242.63243 * 17 15 6 20 20 C 1.53001 * 60.00316 * 252.51257 * 19 17 15 21 21 H 1.08998 * 117.49987 * 107.50993 * 20 19 17 22 22 C 1.50696 * 117.49504 * 252.50896 * 20 19 17 23 23 C 1.38233 * 119.99229 * 8.63478 * 22 20 19 24 24 C 1.38179 * 120.05186 * 180.02562 * 23 22 20 25 25 C 1.38499 * 120.02439 * 359.94888 * 24 23 22 26 26 F 1.35102 * 120.00951 * 180.02562 * 25 24 23 27 27 C 1.38390 * 119.97484 * 0.02843 * 25 24 23 28 28 C 1.38438 * 119.95239 * 359.97438 * 27 25 24 29 29 F 1.35102 * 120.01411 * 179.72986 * 28 27 25 30 30 H 1.08999 * 109.47261 * 299.99516 * 1 2 3 31 31 H 1.08997 * 109.47067 * 59.99873 * 1 2 3 32 32 H 1.09005 * 109.46855 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46432 * 60.00228 * 5 3 2 34 34 H 1.08998 * 109.47329 * 300.00495 * 5 3 2 35 35 H 0.97007 * 119.99935 * 185.01204 * 10 9 7 36 36 H 1.08998 * 117.50050 * 145.01873 * 19 17 15 37 37 H 1.09001 * 117.51307 * 359.97438 * 19 17 15 38 38 H 1.07994 * 119.97015 * 0.02562 * 23 22 20 39 39 H 1.08000 * 119.99091 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.02362 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1764 3.3374 -1.1860 8 1 4.8151 4.2075 -1.2228 9 6 3.5520 2.8845 -2.3417 10 7 2.9170 1.7341 -2.3378 11 14 3.6155 3.9110 -3.9011 12 1 4.3856 5.1544 -3.6443 13 1 4.2762 3.1328 -4.9796 14 1 2.2344 4.2622 -4.3190 15 6 4.1724 3.3256 1.1685 16 8 4.0902 2.7208 2.2167 17 6 4.4877 4.7993 1.1715 18 1 4.0934 5.3663 0.3284 19 6 5.8395 5.2313 1.7432 20 6 4.5547 5.5046 2.5277 21 1 4.3709 4.9029 3.4178 22 6 4.0706 6.9301 2.5953 23 6 4.6747 7.9024 1.8204 24 6 4.2322 9.2100 1.8818 25 6 3.1820 9.5476 2.7193 26 9 2.7492 10.8261 2.7787 27 6 2.5762 8.5749 3.4952 28 6 3.0203 7.2652 3.4329 29 9 2.4334 6.3156 4.1939 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.9563 0.7806 -0.8892 34 1 3.9558 0.7809 0.8907 35 1 2.5437 1.3833 -3.1615 36 1 6.3346 6.0826 1.2760 37 1 6.5008 4.4499 2.1176 38 1 5.4931 7.6398 1.1665 39 1 4.7051 9.9690 1.2763 40 1 1.7569 8.8372 4.1482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120600175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:52 Heat of formation + Delta-G solvation = -157.020682 kcal Electronic energy + Delta-G solvation = -29487.867213 eV Core-core repulsion = 24904.935138 eV Total energy + Delta-G solvation = -4582.932075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.05446 -50.00666 -41.46637 -40.75883 -39.81226 -37.70683 -36.92035 -36.44339 -33.45699 -31.88336 -31.36484 -30.35309 -28.01002 -26.83790 -25.17727 -24.62348 -23.74975 -22.06970 -21.59816 -20.97051 -19.36169 -18.99111 -18.52417 -18.29559 -18.02874 -17.27649 -17.11751 -17.01071 -16.83901 -16.61212 -16.35327 -16.18650 -16.00639 -15.58398 -15.42527 -15.20468 -14.79573 -14.36419 -14.19257 -14.00831 -13.56866 -13.44641 -13.28048 -13.11091 -13.00960 -12.86891 -12.65249 -12.54531 -12.45496 -12.29277 -12.02561 -11.65819 -11.59576 -11.43750 -11.41242 -10.94160 -10.54827 -10.07311 -9.90134 -9.49559 -8.32629 -6.00132 -0.13644 -0.00761 1.36600 1.47373 1.59500 1.64222 1.78662 2.13476 2.26167 2.35579 2.79399 2.85722 2.98729 3.18675 3.39996 3.53574 3.59183 3.87874 3.90193 4.02141 4.12178 4.23524 4.27492 4.32345 4.37445 4.47421 4.59041 4.68457 4.71628 4.79016 4.86774 4.93806 4.95668 5.01611 5.09838 5.16154 5.34541 5.43401 5.62504 5.74080 5.74911 6.34541 7.06730 7.20207 7.46320 7.85736 8.69396 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.003681 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.326216 B = 7603.982512 C = 8523.182881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.491 3.509 4 O -0.551 6.551 5 C 0.151 3.849 6 N -0.439 5.439 7 C -0.335 4.335 8 H 0.123 0.877 9 C -0.005 4.005 10 N -0.909 5.909 11 Si 0.996 3.004 12 H -0.245 1.245 13 H -0.274 1.274 14 H -0.297 1.297 15 C 0.483 3.517 16 O -0.634 6.634 17 C -0.158 4.158 18 H 0.127 0.873 19 C -0.110 4.110 20 C -0.102 4.102 21 H 0.096 0.904 22 C -0.096 4.096 23 C -0.056 4.056 24 C -0.144 4.144 25 C 0.115 3.885 26 F -0.134 7.134 27 C -0.191 4.191 28 C 0.108 3.892 29 F -0.146 7.146 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.079 0.921 35 H 0.271 0.729 36 H 0.147 0.853 37 H 0.100 0.900 38 H 0.175 0.825 39 H 0.177 0.823 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 10.543 3.199 11.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.291 6.291 3 C 0.335 3.665 4 O -0.440 6.440 5 C 0.026 3.974 6 N -0.157 5.157 7 C -0.462 4.462 8 H 0.141 0.859 9 C -0.205 4.205 10 N -0.549 5.549 11 Si 0.820 3.180 12 H -0.168 1.168 13 H -0.200 1.200 14 H -0.224 1.224 15 C 0.274 3.726 16 O -0.523 6.523 17 C -0.179 4.179 18 H 0.145 0.855 19 C -0.147 4.147 20 C -0.121 4.121 21 H 0.115 0.885 22 C -0.097 4.097 23 C -0.074 4.074 24 C -0.162 4.162 25 C 0.095 3.905 26 F -0.113 7.113 27 C -0.210 4.210 28 C 0.089 3.911 29 F -0.124 7.124 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.165 0.835 37 H 0.119 0.881 38 H 0.193 0.807 39 H 0.194 0.806 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.738 10.445 3.587 11.659 hybrid contribution -1.284 -0.174 -0.497 1.388 sum 2.454 10.271 3.090 11.003 Atomic orbital electron populations 1.23284 0.76382 1.04856 1.01032 1.86427 1.23926 1.33826 1.84963 1.24091 0.92701 0.80646 0.69042 1.90475 1.67553 1.37751 1.48240 1.20672 0.86841 0.86016 1.03881 1.43492 1.57646 1.08552 1.05964 1.20165 1.27929 1.13336 0.84732 0.85938 1.26193 0.93895 0.97157 1.03209 1.69708 1.37088 1.19187 1.28943 0.84808 0.77297 0.79103 0.76805 1.16780 1.19971 1.22438 1.20063 0.80765 0.89141 0.82638 1.90501 1.59518 1.69506 1.32736 1.22095 1.05523 0.92186 0.98055 0.85486 1.23246 0.88316 1.03664 0.99453 1.20769 1.03705 0.92262 0.95323 0.88540 1.19374 0.96538 0.95114 0.98651 1.21135 0.99263 0.90433 0.96565 1.21512 0.96619 0.98248 0.99842 1.17395 0.96095 0.78526 0.98439 1.91522 1.89017 1.35418 1.95322 1.21085 1.04511 0.90877 1.04551 1.17439 0.94273 0.85780 0.93631 1.91497 1.83082 1.63974 1.73888 0.93276 0.93718 0.84731 0.84576 0.90321 0.91881 0.83533 0.88135 0.80744 0.80591 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.56 113.37 1.20 2.53 16 2 O -0.37 -16.65 10.57 -51.34 -0.54 -17.19 16 3 C 0.49 25.33 5.92 71.24 0.42 25.75 16 4 O -0.55 -31.78 15.94 21.95 0.35 -31.43 16 5 C 0.15 7.54 5.29 85.64 0.45 7.99 16 6 N -0.44 -22.12 2.11 -639.61 -1.35 -23.47 16 7 C -0.34 -16.11 8.82 84.04 0.74 -15.37 16 8 H 0.12 5.26 6.67 -2.91 -0.02 5.24 16 9 C 0.00 -0.23 5.41 84.93 0.46 0.23 16 10 N -0.91 -46.34 8.21 21.66 0.18 -46.16 16 11 Si 1.00 38.42 29.57 68.60 2.03 40.45 16 12 H -0.24 -8.47 7.11 99.48 0.71 -7.76 16 13 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 14 H -0.30 -12.25 7.11 99.48 0.71 -11.54 16 15 C 0.48 23.58 7.40 87.66 0.65 24.23 16 16 O -0.63 -34.25 15.83 -3.07 -0.05 -34.30 16 17 C -0.16 -5.97 4.68 -11.54 -0.05 -6.03 16 18 H 0.13 4.73 7.12 -2.39 -0.02 4.71 16 19 C -0.11 -2.99 9.56 30.60 0.29 -2.70 16 20 C -0.10 -3.36 5.31 -11.54 -0.06 -3.43 16 21 H 0.10 3.77 7.40 -2.39 -0.02 3.75 16 22 C -0.10 -2.66 5.62 -19.82 -0.11 -2.77 16 23 C -0.06 -1.12 9.29 22.25 0.21 -0.91 16 24 C -0.14 -2.50 10.02 22.32 0.22 -2.28 16 25 C 0.11 2.43 7.30 22.37 0.16 2.59 16 26 F -0.13 -2.82 17.27 44.97 0.78 -2.05 16 27 C -0.19 -4.60 10.01 22.35 0.22 -4.37 16 28 C 0.11 3.19 7.24 22.37 0.16 3.35 16 29 F -0.15 -5.08 16.61 44.97 0.75 -4.34 16 30 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 31 H 0.04 1.64 8.13 -2.39 -0.02 1.62 16 32 H 0.13 3.35 8.14 -2.38 -0.02 3.33 16 33 H 0.14 6.77 6.29 -2.39 -0.01 6.76 16 34 H 0.08 3.79 7.36 -2.39 -0.02 3.77 16 35 H 0.27 13.31 8.32 -92.70 -0.77 12.54 16 36 H 0.15 2.60 6.18 -2.39 -0.01 2.59 16 37 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.18 2.41 6.02 -2.91 -0.02 2.39 16 39 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -70.37 353.86 8.21 -62.16 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 1.11 Total: 27.50 kcal Atomic # 6 Polarization: 23.87 SS G_CDS: 4.97 Total: 28.83 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -1.17 Total: -69.63 kcal Atomic # 8 Polarization: -82.68 SS G_CDS: -0.24 Total: -82.93 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 1.52 Total: -6.38 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -70.37 8.21 -62.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120600175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.859 kcal (2) G-P(sol) polarization free energy of solvation -70.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds